Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G159700 Carya illinoinensis HOM05D004141 ORTHO05D005416 2.0e-236 822.0 409 100.0
QL06p023676 Quercus lobata HOM05D004141 ORTHO05D005416 4.1e-213 744.6 409 89.0
Cfa017272 Carpinus fangiana HOM05D004141 ORTHO05D005416 2.9e-211 738.4 410 89.0
TAR627G0990 Trochodendron aralioides HOM05D004141 ORTHO05D005416 2.0e-199 699.1 415 82.2
CSS0023821 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 5.4e-197 691.0 408 82.4
Actinidia18802 Actinidia chinensis HOM05D004141 ORTHO05D005416 7.0e-197 690.6 410 81.5
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 9.2e-197 690.3 410 82.2
Dinv15000 Davidia involucrata HOM05D004141 ORTHO05D005416 3.5e-196 688.3 410 82.7
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 5.0e-195 684.5 414 82.4
Atru.chr2.2126 Acer truncatum HOM05D004141 ORTHO05D005416 5.6e-194 681.0 410 81.7
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 1.2e-193 679.9 415 81.0
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 1.2e-193 679.9 415 81.0
Potri.011G109000 Populus trichocarpa HOM05D004141 ORTHO05D005416 1.6e-193 679.5 402 82.3
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 3.6e-193 678.3 410 81.0
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 1.1e-192 676.8 410 82.2
TWI31G0451 Tripterygium wilfordii HOM05D004141 ORTHO05D005416 4.0e-192 674.9 405 81.0
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 5.2e-192 674.5 411 81.0
RcHm_v2.0_Chr5g0030771 Rosa chinensis HOM05D004141 ORTHO05D005416 6.8e-192 674.1 411 80.5
Atru.chr3.1550 Acer truncatum HOM05D004141 ORTHO05D005416 8.9e-192 673.7 452 75.9
Nn7g36869 Nelumbo nucifera HOM05D004141 ORTHO05D005416 8.9e-192 673.7 405 81.7
Hma1.2p1_1016F.1_g248060 Hydrangea macrophylla HOM05D004141 ORTHO05D005416 9.8e-191 670.2 410 80.5
Sc03g0010560 Simmondsia chinensis HOM05D004141 ORTHO05D005416 8.3e-190 667.2 410 79.8
Glyma.12G230400 Glycine max HOM05D004141 ORTHO05D005416 1.4e-189 666.4 407 81.1
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 2.4e-189 665.6 411 80.8
Lj3g0016162 Lotus japonicus HOM05D004141 ORTHO05D005416 5.4e-189 664.5 407 80.1
Lj6g0002556 Lotus japonicus HOM05D004141 ORTHO05D005416 5.4e-189 664.5 407 80.3
VMungo1080G0359 Vigna mungo HOM05D004141 ORTHO05D005416 9.2e-189 663.7 407 80.8
CsaV3_4G008070 Cucumis sativus L. HOM05D004141 ORTHO05D005416 1.2e-188 663.3 403 81.1
MD11G1264500 Malus domestica HOM05D004141 ORTHO05D005416 1.2e-188 663.3 411 79.6
Prupe.5G052700 Prunus persica HOM05D004141 ORTHO05D005416 1.6e-188 662.9 408 79.9
Eucgr.F01245 Eucalyptus grandis HOM05D004141 ORTHO05D005416 1.7e-187 659.4 410 77.3
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 3.0e-187 658.7 404 80.2
Phvul.005G081600 Phaseolus vulgaris HOM05D004141 ORTHO05D005416 3.0e-187 658.7 407 79.9
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 5.1e-187 657.9 401 80.5
CANSAT78G1263 Cannabis sativa HOM05D004141 ORTHO05D005416 6.6e-187 657.5 407 79.4
CANSAT78G2476 Cannabis sativa HOM05D004141 ORTHO05D005416 8.6e-187 657.1 407 79.1
MELO3C016129.2 Cucumis melo HOM05D004141 ORTHO05D005416 8.6e-187 657.1 415 79.0
FAN16G3678 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.1e-186 656.8 420 78.8
CsaV3_7G010060 Cucumis sativus L. HOM05D004141 ORTHO05D005416 1.5e-186 656.4 401 80.8
Prupe.4G241400 Prunus persica HOM05D004141 ORTHO05D005416 1.5e-186 656.4 408 79.7
Ciclev10020399m.g Citrus clementina HOM05D004141 ORTHO05D005416 2.5e-186 655.6 410 79.0
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 7.3e-186 654.1 410 79.3
Sopen06g033870 Solanum pennellii HOM05D004141 ORTHO05D005416 1.2e-185 653.3 410 77.8
PGSC0003DMG400030465 Solanum tuberosum HOM05D004141 ORTHO05D005416 2.1e-185 652.5 410 78.0
Solyc06g082490.4 Solanum lycopersicum HOM05D004141 ORTHO05D005416 3.6e-185 651.7 410 77.6
FAN11G2786 Fragaria x ananassa HOM05D004141 ORTHO05D005416 4.7e-185 651.4 430 76.7
Oeu061361.2 Olea europaea HOM05D004141 ORTHO05D005416 6.2e-185 651.0 410 77.3
Sabra11G0096600 Salix brachista HOM05D004141 ORTHO05D005416 1.8e-184 649.4 432 75.5
Rhsim04G0026700 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.3e-184 649.0 448 71.7
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 3.1e-184 648.7 413 78.2
Lalb_Chr25g0285811 Lupinus albus HOM05D004141 ORTHO05D005416 3.1e-184 648.7 403 78.9
arahy.Tifrunner.gnm1.ann1.K2RFPE Arachis hypogaea HOM05D004141 ORTHO05D005416 1.2e-183 646.7 410 76.8
arahy.Tifrunner.gnm1.ann1.2ZZ8MX Arachis hypogaea HOM05D004141 ORTHO05D005416 2.0e-183 646.0 410 76.8
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 2.0e-183 646.0 408 77.9
vmacro09491 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 2.0e-183 646.0 408 77.5
Glyma.13G269200 Glycine max HOM05D004141 ORTHO05D005416 2.6e-183 645.6 431 75.9
Aqoxy1G02012 Aquilegia oxysepala HOM05D004141 ORTHO05D005416 3.4e-183 645.2 409 78.2
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 4.4e-183 644.8 409 78.0
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 4.4e-183 644.8 409 78.0
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 5.8e-183 644.4 410 76.8
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 7.5e-183 644.0 411 78.1
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 9.9e-183 643.7 415 76.4
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 2.2e-182 642.5 410 77.6
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 2.9e-182 642.1 410 75.4
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 2.9e-182 642.1 404 78.2
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 3.7e-182 641.7 401 78.6
FAN21G2932 Fragaria x ananassa HOM05D004141 ORTHO05D005416 6.4e-182 641.0 426 75.6
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 6.4e-182 641.0 415 75.9
SGA_v2.0_scaffold130G34289 Striga asiatica HOM05D004141 ORTHO05D005416 8.3e-182 640.6 411 76.6
GSVIVG01014186001 Vitis vinifera HOM05D004141 ORTHO05D005416 1.1e-181 640.2 410 77.8
SalBow7G1122 Salvia bowleyana HOM05D004141 ORTHO05D005416 2.4e-181 639.0 410 76.8
DCAR_030174 Daucus carota HOM05D004141 ORTHO05D005416 3.2e-181 638.6 410 76.8
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 5.4e-181 637.9 411 77.1
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 7.1e-181 637.5 398 77.9
Nitab4.5_0000383g0110 Nicotiana tabacum HOM05D004141 ORTHO05D005416 9.2e-181 637.1 409 77.3
Rhsim02G0051200 Rhododendron simsii HOM05D004141 ORTHO05D005416 9.2e-181 637.1 459 70.6
Actinidia35211 Actinidia chinensis HOM05D004141 ORTHO05D005416 1.2e-180 636.7 370 83.8
HanXRQChr04g0118321 Helianthus annuus HOM05D004141 ORTHO05D005416 1.2e-180 636.7 403 76.9
MSTRG.11343 Avicennia marina HOM05D004141 ORTHO05D005416 4.6e-180 634.8 408 75.7
THA.LOC104812317 Tarenaya hassleriana HOM05D004141 ORTHO05D005416 4.6e-180 634.8 410 75.6
AUR62019583 Chenopodium quinoa HOM05D004141 ORTHO05D005416 7.8e-180 634.0 410 75.9
MBI14_g32936_MAGBIO Magnolia biondii HOM05D004141 ORTHO05D005416 1.0e-179 633.6 408 75.7
HanXRQChr15g0495231 Helianthus annuus HOM05D004141 ORTHO05D005416 6.6e-179 630.9 414 76.1
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 7.3e-178 627.5 408 76.7
ECA232G4285 Erigeron canadensis HOM05D004141 ORTHO05D005416 1.2e-177 626.7 411 77.1
Peaxi162Scf00390g00331 Petunia axillaris HOM05D004141 ORTHO05D005416 1.6e-177 626.3 405 76.8
Ah.16g104680 Amaranthus hybridus HOM05D004141 ORTHO05D005416 2.8e-177 625.5 410 75.6
ClCG07G010270 Citrullus lanatus HOM05D004141 ORTHO05D005416 8.1e-177 624.0 410 76.6
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 4.0e-176 621.7 408 76.0
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 4.0e-176 621.7 408 76.0
Peaxi162Scf00111g01467 Petunia axillaris HOM05D004141 ORTHO05D005416 5.2e-176 621.3 404 76.7
Lj1C587G1 Lonicera japonica HOM05D004141 ORTHO05D005416 1.2e-175 620.2 411 76.4
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 1.9e-173 612.8 426 72.5
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 7.1e-173 610.9 438 69.6
Sed0017698 Sechium edule HOM05D004141 ORTHO05D005416 7.8e-172 607.4 438 70.1
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 1.0e-171 607.1 410 73.9
AUR62037553 Chenopodium quinoa HOM05D004141 ORTHO05D005416 1.7e-171 606.3 389 76.3
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 6.6e-171 604.4 412 71.8
Lsat_1_v5_gn_7_102521 Lactuca sativa HOM05D004141 ORTHO05D005416 3.6e-169 598.6 408 73.3
unitig_72.g29740 Utricularia gibba HOM05D004141 ORTHO05D005416 1.8e-168 596.3 424 69.3
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 4.0e-168 595.1 414 72.5
HPP92_017867 Vanilla planifolia HOM05D004141 ORTHO05D005416 5.8e-167 591.3 394 74.6
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 5.8e-167 591.3 408 70.8
Manes.03G100400 Manihot esculenta HOM05D004141 ORTHO05D005416 8.4e-166 587.4 350 82.9
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 2.4e-165 585.9 404 70.0
FAN25G0103 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.6e-164 583.2 411 72.5
EL10Ac4g08353 Beta vulgaris HOM05D004141 ORTHO05D005416 6.0e-164 581.3 494 61.7
unitig_746.g26536 Utricularia gibba HOM05D004141 ORTHO05D005416 6.0e-164 581.3 390 72.1
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 1.9e-162 576.2 411 72.5
Sed0020321 Sechium edule HOM05D004141 ORTHO05D005416 1.5e-159 566.6 350 78.9
ECA240G0250 Erigeron canadensis HOM05D004141 ORTHO05D005416 7.6e-159 564.3 368 76.1
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 2.9e-158 562.4 358 74.6
SEGI_24046 Sequoiadendron giganteum HOM05D004141 ORTHO05D005416 3.2e-157 558.9 410 68.8
CSS0043357 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 9.0e-152 540.8 417 68.3
CSS0028209 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 8.7e-147 524.2 402 68.4
Dinv18368 Davidia involucrata HOM05D004141 ORTHO05D005416 4.0e-144 515.4 410 66.1
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 6.9e-144 514.6 312 80.4
Oeu031026.1 Olea europaea HOM05D004141 ORTHO05D005416 1.2e-143 513.8 389 66.8
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 2.6e-143 512.7 417 61.9
Pp3c12_4340 Physcomitrium patens HOM05D004141 ORTHO05D005416 4.5e-143 511.9 413 61.3
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 1.5e-138 496.9 405 61.5
Mapoly0001s0113 Marchantia polymorpha HOM05D004141 ORTHO05D005416 5.7e-130 468.4 412 58.0
Thhalv10019736m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 1.4e-128 463.8 411 59.6
Potri.001G393000 Populus trichocarpa HOM05D004141 ORTHO05D005416 4.5e-127 458.8 368 65.5
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 3.1e-120 436.0 368 63.0
Haze_09318 Corylus avellana HOM05D004141 ORTHO05D005416 1.1e-114 417.5 276 77.2
TPR.G5502 Trifolium pratense HOM05D004141 ORTHO05D005416 4.8e-113 412.1 250 80.8
PRCOL_00006028 Prasinoderma coloniale HOM05D004141 ORTHO05D005416 3.5e-111 406.0 414 50.7
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 1.4e-104 384.0 415 49.6
vmacro11945 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 1.9e-101 373.6 367 55.6
DCAR_013161 Daucus carota HOM05D004141 ORTHO05D005416 2.1e-100 370.2 255 72.2
CAN.G874.81 Capsicum annuum HOM05D004141 ORTHO05D005416 2.2e-97 360.1 210 82.4
CARHR072350 Cardamine hirsuta HOM05D004141 ORTHO05D005416 7.0e-96 355.1 210 81.4
Cre02.g095147 Chlamydomonas reinhardtii HOM05D004141 ORTHO05D005416 6.6e-94 348.6 443 45.1
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 1.9e-93 347.1 410 49.3
C03p92790 Brassica napus HOM05D004141 ORTHO05D005416 2.1e-92 343.6 202 82.2
Rhsim12G0175600 Rhododendron simsii HOM05D004141 ORTHO05D005416 3.3e-85 319.7 410 47.1
CBR_g988 Chara braunii HOM05D004141 ORTHO05D005416 4.4e-82 309.3 453 41.5
Rhsim08G0243200 Rhododendron simsii HOM05D004141 ORTHO05D005416 6.8e-67 258.8 422 42.9
Cfa025499 Carpinus fangiana HOM05D004141 ORTHO05D005416 5.8e-66 255.8 433 39.3
BcaC01g01525 Brassica carinata HOM05D004141 ORTHO05D005416 7.1e-64 248.8 184 67.9
Nitab4.5_0002851g0030 Nicotiana tabacum HOM05D004141 ORTHO05D005416 1.2e-63 248.1 367 43.3
CAN.G4738.1 Capsicum annuum HOM05D004141 ORTHO05D005416 3.9e-62 243.0 158 73.4
Lalb_Chr01g0016531 Lupinus albus HOM05D004141 ORTHO05D005416 9.6e-61 238.4 153 73.2
MD00G1077900 Malus domestica HOM05D004141 ORTHO05D005416 5.2e-59 232.6 189 66.1
Ciclev10022599m.g Citrus clementina HOM05D004141 ORTHO05D005416 2.6e-58 230.3 194 62.9
Rhsim06G0208700 Rhododendron simsii HOM05D004141 ORTHO05D005416 5.8e-58 229.2 339 43.7
Ciclev10022380m.g Citrus clementina HOM05D004141 ORTHO05D005416 1.4e-56 224.6 254 50.4
MD03G1178900 Malus domestica HOM05D004141 ORTHO05D005416 1.4e-56 224.6 224 58.9
Lalb_Chr01g0016541 Lupinus albus HOM05D004141 ORTHO05D048486 2.1e-52 210.7 132 78.0
Rhsim02G0229600 Rhododendron simsii HOM05D004141 ORTHO05D005416 6.9e-51 205.7 123 78.9
BcaB05g25154 Brassica carinata HOM05D004141 ORTHO05D005416 2.1e-39 167.5 155 56.1
SHI22488 Sapria himalayana HOM05D004141 ORTHO05D005416 1.9e-29 134.4 276 34.1
BraA02t07239Z Brassica rapa HOM05D004141 ORTHO05D026982 3.4e-26 123.6 83 69.9
C02p35890 Brassica napus HOM05D004141 ORTHO05D005416 5.8e-26 122.9 308 30.2
Rhsim02G0051400 Rhododendron simsii HOM05D004141 ORTHO05D000437 5.8e-26 122.9 85 70.6
A02p22350 Brassica napus HOM05D004141 ORTHO05D026982 7.6e-26 122.5 83 69.9
Nitab4.5_0010088g0010 Nicotiana tabacum HOM05D004141 ORTHO05D005416 1.0e-22 112.1 107 54.2
MD00G1077500 Malus domestica HOM05D004141 ORTHO05D005416 5.7e-21 106.3 66 74.2
EL10Ac3g06735 Beta vulgaris HOM05D004141 ORTHO05D026982 3.7e-20 103.6 57 80.7
EL10Ac3g06738 Beta vulgaris HOM05D004141 ORTHO05D026982 6.3e-20 102.8 67 71.6
BcaC01g01527 Brassica carinata HOM05D004141 ORTHO05D009181 6.1e-15 86.3 56 75.0
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 1.8e-14 84.7 264 27.7
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 9.7e-13 79.0 260 26.2
BcaC01g01526 Brassica carinata HOM05D004141 ORTHO05D005416 1.7e-12 78.2 44 75.0
MD00G1078000 Malus domestica HOM05D004141 ORTHO05D005416 1.8e-11 74.7 43 76.7
RcHm_v2.0_Chr4g0402621 Rosa chinensis HOM05D004141 ORTHO05D344211 2.4e-11 74.3 49 77.6
BcaC03g15838 Brassica carinata HOM05D004141 ORTHO05D005416 9.1e-11 72.4 46 67.4
PRCOL_00001337 Prasinoderma coloniale HOM05D003378 ORTHO05D003942 9.1e-11 72.4 141 31.2
Oeu048326.1 Olea europaea HOM05D000783 ORTHO05D000705 9.4e-08 62.4 200 28.0
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 1.2e-07 62.0 292 26.0
Oeu008350.1 Olea europaea HOM05D000783 ORTHO05D000705 1.6e-07 61.6 164 28.7
MD05G1191300 Malus domestica HOM05D002084 ORTHO05D002031 6.1e-07 59.7 64 50.0
Prupe.4G169100 Prunus persica HOM05D004141 ORTHO05D005416 6.1e-07 59.7 42 66.7
ECA248G0502 Erigeron canadensis HOM05D000783 ORTHO05D000705 7.9e-07 59.3 214 27.1
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 1.8e-06 58.2 129 32.6
MSTRG.21645 Avicennia marina HOM05D000783 ORTHO05D000705 3.0e-06 57.4 204 26.0
ATR0807G093 Amborella trichopoda HOM05D000783 ORTHO05D000705 6.7e-06 56.2 118 28.8
Solyc09g098590.4 Solanum lycopersicum HOM05D000783 ORTHO05D000705 6.7e-06 56.2 195 26.2
Sopen09g036500 Solanum pennellii HOM05D000783 ORTHO05D000705 6.7e-06 56.2 195 26.2


User provided reference genes

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