Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 7.0e-281 969.9 474 100.0
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 4.7e-245 850.9 472 87.3
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.4e-225 786.2 474 78.7
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 1.3e-223 779.6 474 78.9
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 2.0e-219 765.8 476 76.3
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 7.6e-219 763.8 478 77.6
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 1.1e-217 760.0 478 75.1
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 2.7e-216 755.4 476 75.8
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 2.7e-216 755.4 476 76.5
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 2.7e-216 755.4 474 76.8
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 7.8e-216 753.8 480 76.2
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 1.3e-215 753.1 475 76.6
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 2.3e-215 752.3 476 76.7
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 1.1e-214 750.0 477 74.4
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 9.6e-214 746.9 477 76.7
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 1.3e-213 746.5 478 75.9
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 1.6e-213 746.1 478 75.7
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 6.2e-213 744.2 478 76.6
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 8.1e-213 743.8 477 76.5
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.8e-212 742.7 478 74.7
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 2.0e-211 739.2 474 73.8
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 2.6e-211 738.8 477 75.7
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.6e-211 738.8 474 76.2
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 3.4e-211 738.4 484 75.8
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 3.4e-211 738.4 474 72.8
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 3.4e-211 738.4 480 74.2
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 1.7e-210 736.1 472 74.4
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.2e-210 735.7 478 73.2
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.9e-210 735.3 478 75.9
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.8e-210 734.9 484 75.6
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 5.4e-209 731.1 478 74.9
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 9.3e-209 730.3 479 74.7
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 1.6e-208 729.6 476 72.7
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 1.6e-208 729.6 478 74.5
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 4.6e-208 728.0 479 74.7
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 3.9e-207 724.9 477 73.0
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 5.1e-207 724.5 479 74.5
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 5.6e-206 721.1 482 74.5
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 7.4e-206 720.7 479 71.2
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 4.8e-205 718.0 475 72.8
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 1.8e-204 716.1 484 71.3
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 6.9e-204 714.1 541 65.2
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 4.5e-203 711.4 474 71.9
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 9.9e-203 710.3 484 73.8
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.2e-202 709.1 517 69.2
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 6.4e-202 707.6 475 70.1
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 1.9e-201 706.1 485 70.1
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 3.2e-201 705.3 517 65.8
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 4.2e-201 704.9 499 67.9
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.6e-200 703.0 515 69.1
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 3.5e-200 701.8 476 70.8
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 6.0e-200 701.0 478 69.9
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 7.9e-200 700.7 519 65.3
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 1.0e-199 700.3 517 65.0
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 2.3e-199 699.1 517 65.0
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 3.9e-199 698.4 498 70.7
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 8.7e-199 697.2 478 71.8
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 1.9e-198 696.0 476 72.5
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 4.8e-197 691.4 527 65.8
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 1.2e-195 686.8 480 69.8
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 2.0e-195 686.0 476 68.7
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 3.4e-195 685.3 475 68.2
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 6.5e-194 681.0 480 67.3
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 8.4e-194 680.6 517 64.4
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.4e-193 679.9 476 68.9
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.6e-192 676.4 474 67.1
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 1.6e-192 676.4 480 67.1
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 4.6e-192 674.9 518 63.3
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 7.9e-192 674.1 433 73.7
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.3e-190 668.7 437 74.8
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.3e-189 666.8 481 68.4
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 2.1e-189 666.0 481 68.0
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 1.4e-188 663.3 483 66.5
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 1.4e-188 663.3 480 69.0
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 1.4e-188 663.3 483 67.5
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 2.4e-188 662.5 435 73.3
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 6.9e-188 661.0 481 69.0
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 2.9e-186 655.6 500 64.0
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 6.5e-186 654.4 541 60.3
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 1.9e-185 652.9 476 66.2
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 5.1e-183 644.8 478 66.1
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.5e-182 643.3 489 66.9
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 4.3e-182 641.7 480 65.8
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 5.7e-182 641.3 479 65.1
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 9.7e-182 640.6 475 64.8
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 2.2e-181 639.4 480 65.6
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 4.8e-181 638.3 476 64.5
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 9.1e-180 634.0 481 65.5
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 2.9e-178 629.0 346 89.0
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 2.9e-178 629.0 388 77.3
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 1.9e-177 626.3 475 65.5
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 1.9e-177 626.3 475 64.6
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 2.1e-176 622.9 484 64.7
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 3.6e-176 622.1 475 64.6
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 4.6e-176 621.7 478 63.8
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 4.6e-176 621.7 478 63.8
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 3.9e-175 618.6 478 63.4
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 8.8e-175 617.5 405 74.1
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 1.5e-174 616.7 476 63.9
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.5e-174 616.7 486 62.6
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 9.7e-174 614.0 476 62.8
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 9.7e-174 614.0 437 68.0
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 4.8e-173 611.7 480 62.7
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 8.2e-173 610.9 477 62.9
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 9.1e-172 607.4 487 62.8
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 1.2e-171 607.1 388 74.7
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 3.8e-170 602.1 387 74.7
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 1.1e-169 600.5 476 62.6
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 3.2e-169 599.0 475 61.5
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 3.6e-168 595.5 478 61.7
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 3.6e-168 595.5 478 62.3
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 6.1e-168 594.7 392 73.0
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 8.8e-167 590.9 474 60.5
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 1.5e-166 590.1 477 61.2
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 1.5e-166 590.1 477 61.2
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 2.6e-166 589.3 438 69.2
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 4.5e-163 578.6 474 60.1
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 1.8e-159 566.6 289 91.7
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 3.3e-158 562.4 437 64.8
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 4.4e-158 562.0 438 64.4
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 6.5e-154 548.1 399 67.2
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 9.4e-153 544.3 494 54.9
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.2e-152 543.9 406 67.0
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 2.3e-151 539.7 500 54.2
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 7.0e-148 528.1 458 57.2
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 9.5e-145 517.7 508 53.0
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 1.0e-143 514.2 283 84.1
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 2.3e-143 513.1 431 58.0
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 3.8e-138 495.7 287 77.7
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 8.0e-136 488.0 461 53.8
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 3.5e-131 472.6 322 66.8
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 1.5e-129 467.2 477 50.1
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 3.3e-121 439.5 300 67.0
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 3.5e-115 419.5 528 44.9
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 4.6e-115 419.1 395 52.7
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 5.6e-113 412.1 286 65.4
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 6.8e-111 405.2 559 42.0
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 4.6e-107 392.5 296 63.2
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 5.1e-106 389.0 477 43.0
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 1.4e-103 380.9 304 58.9
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 6.9e-103 378.6 540 40.6
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 3.8e-101 372.9 295 65.4
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 1.8e-87 327.4 375 49.3
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 1.4e-76 291.2 187 78.6
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 1.0e-74 285.0 205 68.3
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.5e-70 271.2 432 40.3
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 9.1e-55 218.8 179 64.2
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 8.0e-51 205.7 189 61.9
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 1.2e-43 181.8 152 64.5
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.7e-43 180.6 139 66.9
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.5e-41 174.9 95 84.2
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 5.7e-41 172.9 93 84.9
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 9.7e-41 172.2 144 59.7
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 9.7e-41 172.2 144 59.7
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.8e-40 169.9 93 82.8
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 3.5e-38 163.7 189 49.7
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.6e-35 154.8 119 66.4
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 2.7e-35 154.1 108 70.4
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 6.1e-35 152.9 126 53.2
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 1.4e-34 151.8 86 79.1
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 1.4e-34 151.8 86 79.1
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 7.5e-33 146.0 178 45.5
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 5.5e-28 129.8 186 43.0
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.3e-24 118.6 136 47.8
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 9.8e-17 92.4 72 62.5
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 1.3e-13 82.0 45 80.0
Glyma.11G158000 Glycine max HOM05D001519 ORTHO05D001403 6.0e-06 56.6 31 77.4


User provided reference genes

Program Settings