Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 8.6e-160 567.0 300 100.0
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 1.0e-104 384.0 246 85.0
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 2.6e-100 369.4 246 81.3
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 3.2e-98 362.5 229 85.6
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 4.1e-93 345.5 275 64.7
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 4.1e-93 345.5 277 64.6
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 5.3e-93 345.1 246 71.1
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 1.2e-92 344.0 275 64.7
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 2.0e-92 343.2 240 72.9
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 4.5e-92 342.0 277 63.5
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 1.3e-91 340.5 275 64.0
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 1.7e-91 340.1 240 71.7
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 2.2e-91 339.7 246 69.9
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 2.2e-91 339.7 247 69.2
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 2.2e-91 339.7 249 68.7
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 8.5e-91 337.8 244 70.1
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 1.1e-90 337.4 275 63.6
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 1.9e-90 336.7 246 69.5
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 3.2e-90 335.9 249 68.7
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 1.2e-89 334.0 247 68.8
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 6.1e-89 331.6 254 68.9
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 7.9e-89 331.3 246 67.5
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 1.4e-88 330.5 247 68.0
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 3.0e-88 329.3 246 67.1
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 5.1e-88 328.6 233 69.5
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 3.3e-87 325.9 249 67.9
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 4.4e-87 325.5 240 68.8
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 5.7e-87 325.1 247 66.4
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 9.7e-87 324.3 269 62.5
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 9.7e-87 324.3 297 60.3
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.3e-86 323.9 296 58.1
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 6.3e-86 321.6 249 65.1
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 6.3e-86 321.6 252 63.9
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 6.3e-86 321.6 240 67.9
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 8.2e-86 321.2 246 63.8
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 1.1e-85 320.9 249 66.3
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 1.4e-85 320.5 240 67.1
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 2.4e-85 319.7 249 65.5
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 3.1e-85 319.3 278 61.5
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 3.1e-85 319.3 283 61.8
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 4.1e-85 318.9 251 65.3
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 7.0e-85 318.2 246 67.5
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 1.6e-84 317.0 277 64.3
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 2.6e-84 316.2 251 64.9
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 1.0e-83 314.3 246 64.6
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 2.2e-83 313.2 259 62.5
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 4.2e-82 308.9 240 64.2
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 4.2e-82 308.9 249 63.9
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 5.5e-82 308.5 246 64.6
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 5.5e-82 308.5 246 64.6
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 9.4e-82 307.8 240 65.4
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 1.2e-81 307.4 248 63.3
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 2.1e-81 306.6 240 64.2
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 6.1e-81 305.1 249 63.1
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 8.0e-81 304.7 295 58.3
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.0e-80 304.3 240 63.3
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 1.4e-80 303.9 240 63.8
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 1.8e-80 303.5 249 62.7
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 2.3e-80 303.1 243 64.2
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 3.0e-80 302.8 246 63.4
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 3.0e-80 302.8 246 64.2
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 4.0e-80 302.4 261 61.3
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 6.7e-80 301.6 243 64.2
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 4.4e-79 298.9 248 63.3
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 7.5e-79 298.1 243 63.4
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 1.7e-78 297.0 249 61.8
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 4.8e-78 295.4 248 66.1
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 6.3e-78 295.0 242 61.2
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 3.1e-77 292.7 252 61.1
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 7.0e-77 291.6 253 59.3
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 9.1e-77 291.2 237 63.7
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 9.1e-77 291.2 210 66.2
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 9.1e-77 291.2 211 68.2
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 3.5e-76 289.3 275 56.4
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 1.0e-75 287.7 247 66.0
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 1.7e-75 287.0 269 62.8
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 2.2e-75 286.6 247 66.4
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 2.9e-75 286.2 247 66.0
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 2.9e-75 286.2 247 66.0
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 6.5e-75 285.0 247 65.6
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 8.5e-75 284.6 247 65.6
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 8.5e-75 284.6 279 53.0
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 1.5e-74 283.9 247 65.2
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.5e-74 283.9 246 61.4
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 1.9e-74 283.5 247 66.0
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 1.9e-74 283.5 247 60.3
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 2.5e-74 283.1 247 66.0
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 2.5e-74 283.1 247 66.0
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 3.2e-74 282.7 247 65.6
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 5.5e-74 282.0 247 65.6
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 1.2e-73 280.8 247 64.8
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 2.1e-73 280.0 240 59.2
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 2.7e-73 279.6 215 64.7
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 6.1e-73 278.5 244 58.2
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 6.1e-73 278.5 212 64.6
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 8.0e-73 278.1 247 64.8
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 1.0e-72 277.7 247 64.8
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 1.0e-72 277.7 247 64.8
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 1.4e-72 277.3 288 50.7
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 4.0e-72 275.8 249 58.2
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 5.2e-72 275.4 210 64.8
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 1.2e-71 274.2 230 60.4
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 2.0e-71 273.5 288 50.3
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 2.0e-71 273.5 259 56.8
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 5.7e-71 271.9 278 58.3
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 3.7e-70 269.2 248 63.7
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 6.3e-70 268.5 209 71.3
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 6.3e-70 268.5 254 57.1
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 1.1e-69 267.7 249 57.8
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 4.1e-69 265.8 212 62.7
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 7.7e-68 261.5 260 55.4
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 1.3e-67 260.8 274 50.7
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 3.0e-64 249.6 250 55.2
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 6.8e-64 248.4 204 61.8
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 8.9e-56 221.5 246 52.0
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 2.2e-54 216.9 244 47.1
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 4.6e-52 209.1 232 50.9
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 3.0e-51 206.5 270 42.2
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 3.9e-51 206.1 214 50.0
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.5e-50 204.1 191 55.0
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 3.3e-50 203.0 246 51.2
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 4.3e-50 202.6 268 44.8
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 8.3e-46 188.3 135 68.9
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 4.6e-44 182.6 169 53.8
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 4.1e-37 159.5 109 65.1
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 5.6e-34 149.1 152 57.2
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 1.2e-31 141.4 128 58.6
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 1.0e-27 128.3 113 54.0
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 3.9e-27 126.3 216 41.2
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 5.4e-13 79.3 53 79.2


User provided reference genes

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