Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 0.0e+00 1405.2 714 100.0
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 0.0e+00 1097.8 709 78.8
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 3.2e-277 958.4 715 66.9
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 6.6e-267 924.1 716 65.9
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 1.9e-266 922.5 716 64.2
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 3.1e-264 915.2 709 64.9
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 1.7e-262 909.4 713 64.1
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 3.2e-261 905.2 712 64.3
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 1.0e-259 900.2 718 62.8
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 3.0e-259 898.7 715 63.8
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 1.1e-253 880.2 716 62.6
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 6.0e-252 874.4 707 62.4
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 2.3e-251 872.5 719 62.9
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 1.5e-250 869.8 546 80.2
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 1.2e-249 866.7 707 62.9
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 6.9e-248 860.9 717 60.5
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 2.2e-246 855.9 710 60.1
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 3.9e-243 845.1 680 62.6
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 9.6e-242 840.5 715 61.1
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 4.8e-241 838.2 717 59.1
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 2.4e-240 835.9 711 59.6
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 5.3e-240 834.7 705 60.7
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 1.4e-237 826.6 701 59.6
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 5.4e-237 824.7 683 62.8
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 1.9e-234 816.2 709 59.9
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 2.5e-234 815.8 716 60.1
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 7.4e-234 814.3 667 62.5
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 1.6e-233 813.1 713 60.4
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 8.1e-233 810.8 708 59.7
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 2.0e-231 806.2 710 58.5
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 1.7e-230 803.1 716 59.1
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 1.7e-230 803.1 716 59.4
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 1.2e-228 797.0 714 60.4
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 1.3e-225 786.9 760 54.5
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 2.8e-225 785.8 733 58.5
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 4.8e-225 785.0 706 57.8
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 4.8e-225 785.0 682 59.8
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 1.2e-223 780.4 709 56.7
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 2.9e-222 775.8 667 60.1
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.9e-221 773.1 702 58.3
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 4.2e-221 771.9 708 58.8
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 5.5e-221 771.5 744 55.2
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 1.2e-220 770.4 648 63.0
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 5.9e-215 751.5 704 54.8
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 2.9e-214 749.2 719 54.4
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 2.5e-213 746.1 711 55.1
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 1.2e-212 743.8 713 56.5
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 2.7e-212 742.7 708 53.7
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.1e-210 737.3 719 55.2
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 2.0e-210 736.5 702 56.1
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 2.2e-209 733.0 708 53.8
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 4.8e-209 731.9 708 54.5
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 3.1e-208 729.2 706 53.3
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 4.1e-208 728.8 714 54.8
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 9.1e-208 727.6 706 53.1
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 5.5e-205 718.4 666 56.5
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 7.2e-205 718.0 732 52.7
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 3.6e-204 715.7 727 53.5
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 1.4e-203 713.8 704 53.4
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 1.1e-202 710.7 713 53.6
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 2.4e-200 703.0 720 51.9
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 1.0e-198 697.6 715 52.3
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 1.3e-198 697.2 672 53.6
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 5.5e-197 691.8 720 51.0
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 1.4e-195 687.2 725 51.7
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 5.2e-195 685.3 719 54.0
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 2.0e-194 683.3 711 52.0
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 3.3e-194 682.6 714 51.3
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 7.0e-192 674.9 714 51.7
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 1.6e-191 673.7 664 53.6
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 7.7e-191 671.4 722 51.0
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 1.7e-190 670.2 713 51.3
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 1.7e-190 670.2 713 51.5
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 5.0e-190 668.7 717 51.7
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 9.4e-189 664.5 713 50.8
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 9.4e-189 664.5 713 50.5
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 1.2e-188 664.1 707 50.2
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 3.6e-188 662.5 716 50.7
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 5.2e-187 658.7 720 49.6
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 1.5e-186 657.1 749 49.1
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 3.7e-185 652.5 701 50.9
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 2.4e-184 649.8 708 50.6
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 1.0e-182 644.4 723 50.1
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 2.9e-182 642.9 690 49.9
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 2.1e-180 636.7 759 46.1
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 2.0e-178 630.2 660 49.4
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 1.7e-177 627.1 658 52.7
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 1.7e-177 627.1 677 50.8
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 1.0e-171 607.8 673 48.9
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 2.3e-166 590.1 709 48.2
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 2.3e-166 590.1 512 61.1
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 1.8e-163 580.5 729 46.2
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 6.4e-161 572.0 711 46.7
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 8.3e-161 571.6 763 42.9
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 1.6e-159 567.4 524 59.5
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 7.8e-159 565.1 523 59.3
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 2.5e-157 560.1 666 49.2
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 1.1e-149 534.6 712 41.9
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 1.2e-148 531.2 576 51.2
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 7.3e-141 505.4 771 38.7
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 1.7e-137 494.2 538 52.6
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 1.4e-136 491.1 769 38.2
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 7.8e-135 485.3 413 60.8
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.4e-128 464.5 485 54.2
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.0e-126 458.4 500 51.0
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 1.8e-123 447.6 635 40.8
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 4.9e-121 439.5 749 37.2
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.9e-120 437.6 713 37.3
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 2.4e-120 437.2 713 37.3
RcHm_v2.0_Chr5g0028891 Rosa chinensis HOM05D005685 ORTHO05D007046 8.1e-116 422.2 283 72.8
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 5.8e-114 416.0 374 55.6
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 1.3e-108 398.3 814 33.7
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 6.2e-108 396.0 659 39.3
TWI38G0887 Tripterygium wilfordii HOM05D005685 ORTHO05D007046 2.5e-104 384.0 257 71.2
BraA06t26874Z Brassica rapa HOM05D005685 ORTHO05D007046 2.3e-94 350.9 307 59.6
Glyma.15G212100 Glycine max HOM05D005685 ORTHO05D007046 1.2e-90 338.6 222 70.7
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 1.6e-79 301.6 325 50.5
Eucgr.F03222 Eucalyptus grandis HOM05D005685 ORTHO05D007046 5.9e-74 283.1 341 46.9
Os10g0567300 Oryza sativa ssp. japonica HOM05D005685 ORTHO05D007046 2.2e-68 264.6 277 47.3
CSS0047371 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 5.2e-54 216.9 121 77.7
CDE04G0489 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 9.8e-53 212.6 148 66.2
MBI19_g17443_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 3.1e-30 137.9 103 67.0
Zm00001eb210210 Zea mays HOM05D005685 ORTHO05D007046 7.6e-29 133.3 154 47.4
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 3.4e-21 107.8 172 44.8
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 1.4e-19 102.4 164 39.0
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 9.3e-19 99.8 132 44.7
SEGI_34067 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 1.2e-18 99.4 298 28.5
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 7.8e-18 96.7 270 33.3
CSS0003149 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 4.8e-15 87.4 88 53.4
CBR_g28498 Chara braunii HOM05D005685 ORTHO05D007046 1.8e-14 85.5 75 58.7
SEGI_05558 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 1.1e-08 66.2 111 30.6
MBI19_g17438_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 1.5e-08 65.9 56 58.9
Eucgr.F01010 Eucalyptus grandis HOM05D000783 ORTHO05D000705 1.6e-07 62.4 68 48.5
A08p10430 Brassica napus HOM05D005685 ORTHO05D007046 6.9e-06 57.0 92 40.2


User provided reference genes

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