Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 4.6e-70 267.7 127 100.0
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 1.9e-63 245.7 125 91.2
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 5.4e-63 244.2 125 91.2
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 9.2e-63 243.4 125 91.2
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 1.2e-62 243.0 125 88.8
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 1.2e-62 243.0 125 91.2
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 2.1e-62 242.3 125 90.4
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 2.1e-62 242.3 125 89.6
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 2.1e-62 242.3 125 89.6
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 6.0e-62 240.7 125 89.6
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 7.8e-62 240.4 125 88.0
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 1.0e-61 240.0 125 88.0
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 1.3e-61 239.6 125 89.6
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.7e-61 239.2 125 88.0
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 1.7e-61 239.2 126 91.3
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 2.3e-61 238.8 125 89.6
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 2.3e-61 238.8 125 89.6
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 2.3e-61 238.8 125 88.8
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 2.3e-61 238.8 126 90.5
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 3.0e-61 238.4 125 89.6
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 3.0e-61 238.4 125 89.6
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 3.0e-61 238.4 125 89.6
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 3.0e-61 238.4 125 89.6
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 5.1e-61 237.7 125 90.4
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 6.6e-61 237.3 124 88.7
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 6.6e-61 237.3 125 88.8
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 8.6e-61 236.9 125 88.0
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.5e-60 236.1 124 87.9
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 1.9e-60 235.7 125 87.2
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 1.9e-60 235.7 126 85.7
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 2.5e-60 235.3 125 88.8
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.5e-60 235.3 125 87.2
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 2.5e-60 235.3 125 86.4
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 2.5e-60 235.3 125 88.0
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 3.3e-60 235.0 124 87.9
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 4.3e-60 234.6 125 86.4
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 4.3e-60 234.6 125 86.4
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 4.3e-60 234.6 125 86.4
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 4.3e-60 234.6 125 86.4
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 4.3e-60 234.6 125 87.2
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 4.3e-60 234.6 125 87.2
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 5.6e-60 234.2 125 87.2
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 5.6e-60 234.2 125 87.2
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 5.6e-60 234.2 125 84.8
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 5.6e-60 234.2 125 88.0
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 7.3e-60 233.8 125 87.2
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 7.3e-60 233.8 125 84.8
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 9.5e-60 233.4 125 88.8
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 9.5e-60 233.4 125 88.0
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 9.5e-60 233.4 125 88.8
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 9.5e-60 233.4 125 86.4
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 9.5e-60 233.4 125 86.4
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 1.2e-59 233.0 125 85.6
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 2.1e-59 232.3 125 87.2
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.8e-59 231.9 125 86.4
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 3.6e-59 231.5 126 88.9
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 6.2e-59 230.7 125 86.4
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 6.2e-59 230.7 125 86.4
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 1.8e-58 229.2 125 85.6
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.8e-58 229.2 125 85.6
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 1.8e-58 229.2 125 84.0
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 1.8e-58 229.2 125 85.6
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 2.4e-58 228.8 126 85.7
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 3.1e-58 228.4 125 84.8
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 3.1e-58 228.4 125 84.8
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 3.1e-58 228.4 125 85.6
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 4.0e-58 228.0 125 85.6
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 4.0e-58 228.0 125 84.8
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 5.2e-58 227.6 125 84.8
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 5.2e-58 227.6 125 84.8
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 5.2e-58 227.6 125 84.8
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 5.2e-58 227.6 125 84.8
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 5.2e-58 227.6 125 84.0
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 8.9e-58 226.9 125 84.8
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 8.9e-58 226.9 125 84.8
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 1.2e-57 226.5 125 84.8
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 1.2e-57 226.5 125 84.8
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 1.5e-57 226.1 140 77.9
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 2.0e-57 225.7 125 84.0
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 2.0e-57 225.7 125 84.8
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 2.0e-57 225.7 125 84.8
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 2.6e-57 225.3 125 84.0
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 3.4e-57 224.9 125 84.0
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 3.4e-57 224.9 125 84.0
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 5.8e-57 224.2 125 83.2
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 7.6e-57 223.8 125 84.0
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 7.6e-57 223.8 125 84.0
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 1.3e-56 223.0 125 85.6
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 1.7e-56 222.6 125 84.0
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 1.7e-56 222.6 126 85.7
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 1.7e-56 222.6 125 82.4
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 3.8e-56 221.5 125 83.2
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 4.9e-56 221.1 125 83.2
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 4.9e-56 221.1 125 83.2
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 8.4e-56 220.3 125 84.0
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 1.1e-55 219.9 124 82.3
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 1.9e-55 219.2 125 84.0
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 3.2e-55 218.4 125 81.6
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 3.2e-55 218.4 120 85.0
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 4.1e-55 218.0 125 82.4
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 5.4e-55 217.6 125 80.0
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 9.2e-55 216.9 126 82.5
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 2.1e-54 215.7 113 86.7
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 2.8e-51 205.3 107 89.7
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 8.1e-51 203.8 107 88.8
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 2.4e-50 202.2 125 76.8
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 4.0e-50 201.4 112 82.1
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 6.9e-50 200.7 125 72.0
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 1.2e-49 199.9 125 74.4
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 2.6e-49 198.7 107 88.8
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 4.4e-49 198.0 93 93.5
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 5.8e-49 197.6 107 86.0
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 5.8e-49 197.6 107 86.9
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 9.9e-49 196.8 93 93.5
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 1.3e-48 196.4 107 85.0
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 1.7e-48 196.1 107 84.1
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 1.7e-48 196.1 107 86.0
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 2.2e-48 195.7 107 83.2
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 6.4e-48 194.1 107 84.1
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.9e-47 192.6 107 81.3
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 2.4e-47 192.2 93 90.3
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 2.7e-46 188.7 104 83.7
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 2.7e-46 188.7 125 68.8
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 7.8e-46 187.2 112 79.5
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 3.0e-45 185.3 107 82.2
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 3.9e-45 184.9 112 78.6
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 2.5e-44 182.2 107 80.4
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 1.3e-43 179.9 139 65.5
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 1.4e-42 176.4 123 67.5
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 1.9e-39 166.0 125 67.2
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 2.1e-38 162.5 124 64.5
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 2.3e-37 159.1 141 58.9
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 1.9e-36 156.0 75 89.3
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 1.1e-34 150.2 125 61.6
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 3.1e-34 148.7 101 62.4
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 2.1e-30 136.0 102 59.8
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 1.3e-29 133.3 79 79.7
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 2.3e-29 132.5 75 84.0
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.1e-28 130.2 79 73.4
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 3.7e-27 125.2 106 62.3
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 3.7e-27 125.2 125 52.8
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 1.2e-25 120.2 66 81.8
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.0e-25 119.4 87 66.7
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 2.6e-25 119.0 66 81.8
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 5.8e-25 117.9 108 62.0
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 2.2e-24 115.9 106 51.9
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 8.4e-24 114.0 81 67.9
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 1.3e-21 106.7 75 64.0
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 4.3e-20 101.7 97 54.6
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 2.6e-17 92.4 63 68.3
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 7.6e-17 90.9 72 62.5
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 6.5e-16 87.8 79 50.6
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 1.1e-15 87.0 94 47.9
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 7.2e-15 84.3 43 86.0
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 3.4e-09 65.5 38 86.8
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 2.2e-08 62.8 47 68.1
SMO119G0354 Selaginella moellendorffii HOM05D005100 ORTHO05D005607 1.9e-07 59.7 95 37.9


User provided reference genes

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