Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 3.1e-51 204.9 107 100.0
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 9.3e-32 140.2 106 79.2
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 3.0e-30 135.2 106 76.4
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.9e-29 132.5 93 77.4
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 6.2e-28 127.5 100 75.0
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.1e-27 125.2 108 67.6
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 7.6e-26 120.6 108 64.8
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 1.3e-25 119.8 104 65.4
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.7e-25 119.4 109 64.2
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 8.4e-25 117.1 112 61.6
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 8.4e-25 117.1 105 66.7
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 2.4e-24 115.5 104 64.4
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 7.1e-24 114.0 104 61.5
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 2.1e-23 112.5 109 65.1
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 3.5e-23 111.7 104 60.6
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 4.6e-23 111.3 103 63.1
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 6.0e-23 110.9 111 64.9
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 6.0e-23 110.9 96 62.5
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 7.9e-23 110.5 96 62.5
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 7.9e-23 110.5 105 63.8
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.8e-22 109.4 111 65.8
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 1.8e-22 109.4 96 62.5
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.0e-22 108.6 110 63.6
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 3.9e-22 108.2 96 60.4
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 3.9e-22 108.2 92 65.2
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.1e-21 106.7 91 68.1
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.9e-21 105.9 110 62.7
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 3.3e-21 105.1 93 65.6
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 5.6e-21 104.4 105 62.9
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 7.4e-21 104.0 105 59.0
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 3.7e-20 101.7 97 56.7
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 1.1e-19 100.1 81 64.2
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.4e-19 99.8 105 61.0
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 1.5e-18 96.3 91 62.6
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 5.8e-18 94.4 111 55.0
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 2.2e-17 92.4 105 56.2
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 2.9e-17 92.0 107 55.1
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 3.8e-17 91.7 108 54.6
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 4.9e-17 91.3 84 59.5
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 4.9e-17 91.3 98 53.1
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 4.9e-17 91.3 102 52.9
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 6.4e-17 90.9 112 52.7
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 4.2e-16 88.2 100 56.0
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 9.3e-16 87.0 96 56.2
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 9.3e-16 87.0 92 62.0
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 1.2e-15 86.7 87 64.4
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.1e-15 85.9 100 55.0
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 4.6e-15 84.7 85 58.8
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 2.3e-14 82.4 84 53.6
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 5.1e-14 81.3 83 60.2
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 5.1e-14 81.3 86 54.7
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 8.7e-14 80.5 91 51.6
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 1.1e-13 80.1 83 54.2
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 4.3e-13 78.2 105 47.6
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 4.3e-13 78.2 109 47.7
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 5.6e-13 77.8 106 49.1
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 7.4e-13 77.4 90 55.6
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 7.4e-13 77.4 106 49.1
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 7.4e-13 77.4 106 49.1
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 1.3e-12 76.6 106 50.0
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.1e-12 75.9 106 48.1
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 2.1e-12 75.9 95 48.4
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 2.8e-12 75.5 94 58.5
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 1.4e-11 73.2 115 46.1
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.4e-11 73.2 106 47.2
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.8e-11 72.8 74 58.1
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 2.4e-11 72.4 98 51.0
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 2.4e-11 72.4 106 44.3
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 3.1e-11 72.0 69 60.9
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 4.0e-11 71.6 71 62.0
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 5.3e-11 71.2 91 51.6
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 5.3e-11 71.2 69 59.4
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 5.3e-11 71.2 102 48.0
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 5.3e-11 71.2 90 50.0
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 6.9e-11 70.9 94 50.0
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 9.0e-11 70.5 60 66.7
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 4.5e-10 68.2 94 47.9
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 4.5e-10 68.2 68 54.4
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 5.8e-10 67.8 76 51.3
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 5.8e-10 67.8 97 44.3
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.0e-09 67.0 99 46.5
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.3e-09 66.6 98 50.0
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 2.2e-09 65.9 73 53.4
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.9e-09 65.5 100 46.0
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 2.9e-09 65.5 104 46.2
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 2.9e-09 65.5 99 48.5
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.8e-09 65.1 67 59.7
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 4.9e-09 64.7 76 50.0
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 8.4e-09 63.9 67 50.7
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 8.4e-09 63.9 98 45.9
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 1.4e-08 63.2 110 40.0
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.9e-08 62.8 46 67.4
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 1.9e-08 62.8 45 66.7
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 3.2e-08 62.0 81 51.9
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 4.2e-08 61.6 53 54.7
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 5.5e-08 61.2 78 47.4
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 5.5e-08 61.2 94 42.6
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 7.1e-08 60.8 63 49.2
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 7.1e-08 60.8 84 50.0
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 9.3e-08 60.5 52 61.5
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 1.2e-07 60.1 44 72.7
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 1.6e-07 59.7 87 40.2
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.6e-07 59.7 66 51.5
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.6e-07 59.7 56 53.6
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 2.1e-07 59.3 101 38.6
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.7e-07 58.9 78 48.7
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 3.5e-07 58.5 89 40.4
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 3.5e-07 58.5 66 47.0
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 3.5e-07 58.5 63 52.4
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 3.5e-07 58.5 66 47.0
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 3.5e-07 58.5 66 47.0
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 3.5e-07 58.5 66 47.0
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 3.5e-07 58.5 66 47.0
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.5e-07 58.5 78 51.3
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.5e-07 58.5 45 62.2
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 3.5e-07 58.5 99 43.4
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 4.6e-07 58.2 87 44.8
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 4.6e-07 58.2 42 66.7
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 4.6e-07 58.2 42 66.7
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.6e-07 58.2 78 50.0
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 4.6e-07 58.2 111 41.4
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 4.6e-07 58.2 101 37.6
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.0e-07 57.8 68 48.5
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 6.0e-07 57.8 113 45.1
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 7.9e-07 57.4 55 54.5
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 7.9e-07 57.4 55 54.5
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 7.9e-07 57.4 55 54.5
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 7.9e-07 57.4 59 50.8
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 7.9e-07 57.4 42 66.7
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 1.0e-06 57.0 115 33.0
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.3e-06 56.6 66 51.5
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 1.3e-06 56.6 52 51.9
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 1.8e-06 56.2 66 47.0
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.8e-06 56.2 66 50.0
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 2.3e-06 55.8 44 65.9
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 2.3e-06 55.8 83 49.4
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.3e-06 55.8 89 41.6
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 3.0e-06 55.5 66 53.0
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 3.0e-06 55.5 94 40.4
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 3.0e-06 55.5 84 42.9
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 3.9e-06 55.1 82 39.0
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 3.9e-06 55.1 59 50.8
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 6.7e-06 54.3 55 50.9
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 6.7e-06 54.3 66 43.9
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 6.7e-06 54.3 55 50.9
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 6.7e-06 54.3 55 50.9
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 6.7e-06 54.3 66 43.9
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 6.7e-06 54.3 47 55.3
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 6.7e-06 54.3 47 55.3
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 8.7e-06 53.9 55 52.7
DCAR_008565 Daucus carota HOM05D003683 ORTHO05D004143 8.7e-06 53.9 42 69.0


User provided reference genes

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