Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 6.0e-152 540.8 271 100.0
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 4.6e-128 461.5 265 87.2
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 4.6e-128 461.5 265 87.2
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 2.6e-123 445.7 267 84.6
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 2.6e-123 445.7 266 82.0
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 3.0e-119 432.2 266 78.6
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 5.1e-119 431.4 271 77.9
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 1.1e-118 430.3 269 79.2
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 4.3e-118 428.3 267 78.3
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 5.6e-118 427.9 267 78.3
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 9.6e-118 427.2 265 77.7
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 1.3e-117 426.8 267 77.2
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 1.6e-117 426.4 265 78.1
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 1.4e-116 423.3 266 77.4
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 1.8e-116 422.9 266 77.1
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 2.4e-116 422.5 265 77.4
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 2.4e-116 422.5 262 76.7
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 2.4e-116 422.5 259 79.2
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 3.1e-116 422.2 264 77.7
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 5.3e-116 421.4 266 76.7
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 9.0e-116 420.6 266 77.8
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 1.2e-115 420.2 266 77.8
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 2.6e-115 419.1 268 77.2
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 3.4e-115 418.7 266 77.4
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 3.4e-115 418.7 266 76.7
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 4.5e-115 418.3 265 77.0
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 7.6e-115 417.5 266 77.4
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 1.3e-114 416.8 261 77.4
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 1.3e-114 416.8 267 76.8
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 1.7e-114 416.4 259 79.9
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 2.2e-114 416.0 254 79.5
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 2.9e-114 415.6 254 79.9
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 3.8e-114 415.2 271 74.9
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 4.9e-114 414.8 268 77.6
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 8.4e-114 414.1 265 75.5
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 8.4e-114 414.1 270 74.8
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 1.1e-113 413.7 265 76.6
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.4e-113 413.3 259 78.0
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 1.9e-113 412.9 271 75.6
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 2.4e-113 412.5 261 78.2
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 9.3e-113 410.6 281 71.9
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 1.2e-112 410.2 267 71.2
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 1.6e-112 409.8 266 75.6
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 2.1e-112 409.5 265 77.4
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 2.1e-112 409.5 262 76.0
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 3.5e-112 408.7 263 73.8
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 3.5e-112 408.7 266 74.8
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.0e-111 407.1 269 74.7
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 1.3e-111 406.8 266 74.8
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 1.8e-111 406.4 262 74.4
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 2.3e-111 406.0 266 75.6
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 3.0e-111 405.6 269 74.3
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 3.9e-111 405.2 265 72.8
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 3.9e-111 405.2 266 72.2
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 3.9e-111 405.2 271 74.2
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 6.7e-111 404.4 269 75.1
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 8.7e-111 404.1 290 70.7
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 2.5e-110 402.5 267 73.8
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 5.6e-110 401.4 269 73.6
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 7.4e-110 401.0 262 73.7
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 9.6e-110 400.6 290 70.0
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 1.6e-109 399.8 265 72.1
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 2.1e-109 399.4 262 73.7
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 3.7e-109 398.7 286 69.9
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 4.8e-109 398.3 265 71.7
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 4.8e-109 398.3 265 72.1
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 4.0e-108 395.2 316 63.9
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 9.0e-108 394.0 269 71.4
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 9.0e-108 394.0 269 71.4
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 1.2e-107 393.7 270 71.1
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 1.5e-107 393.3 268 71.6
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 3.4e-107 392.1 270 71.5
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 4.5e-107 391.7 270 71.1
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 7.6e-107 391.0 318 61.9
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 1.3e-106 390.2 314 64.6
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 2.2e-106 389.4 268 72.8
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 2.2e-106 389.4 268 72.8
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 4.9e-106 388.3 259 72.6
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 6.5e-106 387.9 269 72.1
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 1.2e-104 383.6 233 80.3
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 3.5e-104 382.1 270 68.1
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.0e-103 380.6 231 81.4
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 1.8e-103 379.8 259 71.0
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 2.3e-103 379.4 231 81.4
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 7.4e-102 374.4 262 69.8
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-101 373.6 232 79.3
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 2.2e-101 372.9 266 69.5
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 6.3e-101 371.3 268 67.2
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 8.2e-101 370.9 241 76.3
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 1.1e-100 370.5 284 67.3
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 3.1e-100 369.0 246 72.0
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 2.0e-99 366.3 231 77.9
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 4.2e-97 358.6 370 53.5
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 4.6e-96 355.1 266 64.7
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 1.7e-93 346.7 265 66.0
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 1.1e-92 344.0 262 66.4
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 3.4e-91 339.0 251 64.5
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 4.7e-88 328.6 198 77.3
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 6.1e-88 328.2 230 71.7
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 1.8e-87 326.6 252 64.3
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 3.3e-86 322.4 250 62.4
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.1e-84 315.8 239 68.2
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 6.1e-80 301.6 206 74.8
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 3.9e-79 298.9 192 76.0
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 5.9e-75 285.0 193 74.1
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 6.5e-74 281.6 197 65.5
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 1.5e-70 270.4 172 75.6
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 1.4e-68 263.8 163 83.4
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 7.7e-67 258.1 196 67.3
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 2.5e-65 253.1 167 73.1
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-64 250.8 159 76.7
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 2.7e-64 249.6 164 75.0
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 2.0e-62 243.4 196 62.8
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 1.2e-56 224.2 130 82.3
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 1.2e-54 217.6 171 65.5
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 1.3e-53 214.2 171 64.3
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 1.4e-47 194.1 228 49.6
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-45 186.0 173 60.7
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 8.3e-45 184.9 122 71.3
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-44 184.5 157 64.3
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-44 183.7 173 60.7
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 3.2e-44 183.0 156 64.1
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 7.0e-44 181.8 173 59.0
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-43 181.0 163 62.6
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 3.5e-43 179.5 162 61.7
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 6.0e-43 178.7 156 63.5
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 2.5e-41 173.3 164 58.5
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 2.8e-40 169.9 108 76.9
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 2.6e-38 163.3 144 63.2
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 4.4e-38 162.5 104 74.0
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 6.4e-37 158.7 168 56.5
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 2.4e-36 156.8 105 71.4
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 7.0e-36 155.2 175 54.3
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 3.3e-33 146.4 94 78.7
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 5.6e-33 145.6 107 71.0
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 3.6e-32 142.9 160 53.8
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 3.6e-32 142.9 160 53.8
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 4.7e-32 142.5 228 40.4
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-31 141.4 123 62.6
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-31 141.0 122 62.3
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 3.4e-30 136.3 88 71.6
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.3e-25 119.8 156 49.4
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 3.6e-24 116.3 109 59.6
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.1e-23 114.8 74 71.6
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-21 107.5 70 78.6
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.2e-20 103.2 159 42.8
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 7.3e-17 92.0 57 73.7
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 2.4e-15 87.0 89 56.2
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 3.1e-15 86.7 101 49.5
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 3.1e-15 86.7 55 74.5
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 4.8e-08 62.8 111 37.8
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 1.1e-07 61.6 34 76.5
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 1.8e-07 60.8 109 34.9
Duzib205G0541 Durio zibethinus HOM05D004703 ORTHO05D005801 7.6e-06 55.5 147 32.7


User provided reference genes

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