Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 0.0e+00 1091.3 539 100.0
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 9.9e-300 1032.7 539 93.9
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 4.3e-295 1017.3 536 92.7
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 2.4e-285 984.9 537 89.2
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 1.5e-284 982.2 537 88.8
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 3.4e-284 981.1 539 87.8
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 4.5e-284 980.7 537 88.3
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 5.9e-284 980.3 537 88.3
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 5.9e-284 980.3 537 88.6
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 1.9e-282 975.3 537 88.6
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 4.2e-282 974.2 537 88.5
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 9.3e-282 973.0 537 87.7
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 3.6e-281 971.1 537 88.1
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 7.9e-281 969.9 537 87.7
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 1.0e-280 969.5 537 88.6
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 3.0e-280 968.0 537 87.5
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 7.4e-279 963.4 537 87.2
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 1.3e-278 962.6 531 88.5
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 1.7e-278 962.2 537 87.7
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 2.2e-278 961.8 537 86.6
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 2.2e-278 961.8 537 87.2
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 3.7e-278 961.1 537 87.0
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 4.8e-278 960.7 537 87.2
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 4.8e-278 960.7 537 87.5
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 6.3e-278 960.3 539 86.3
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 8.2e-278 959.9 537 87.2
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 8.2e-278 959.9 539 86.6
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 1.4e-277 959.1 537 87.2
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 1.8e-277 958.7 537 86.6
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 1.8e-277 958.7 537 86.6
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 4.1e-277 957.6 531 87.4
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 5.3e-277 957.2 537 87.0
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 6.9e-277 956.8 537 86.4
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 1.5e-276 955.7 537 85.8
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 1.5e-276 955.7 539 86.3
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.5e-276 955.7 537 86.8
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 2.0e-276 955.3 537 86.4
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 2.6e-276 954.9 544 86.2
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 3.4e-276 954.5 537 86.2
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 7.7e-276 953.4 537 86.0
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 1.0e-275 953.0 537 86.4
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.0e-275 953.0 537 86.4
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.3e-275 952.6 537 86.2
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 1.7e-275 952.2 537 86.8
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 5.0e-275 950.7 537 86.6
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 5.0e-275 950.7 537 86.0
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 1.1e-274 949.5 540 84.8
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 2.5e-274 948.3 537 86.2
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 2.5e-274 948.3 537 86.2
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 2.5e-274 948.3 538 86.6
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 3.2e-274 948.0 537 86.4
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 4.2e-274 947.6 537 86.0
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 2.7e-273 944.9 539 85.0
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 6.1e-273 943.7 498 93.4
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 1.8e-272 942.2 537 86.2
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 3.9e-272 941.0 537 85.3
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 3.9e-272 941.0 537 85.3
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 3.3e-271 937.9 531 85.1
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 5.7e-271 937.2 537 85.3
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 7.4e-271 936.8 538 85.3
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 7.4e-271 936.8 537 84.9
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 2.8e-270 934.9 539 84.6
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 1.4e-269 932.6 537 85.1
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 1.3e-267 926.0 539 84.6
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 1.4e-266 922.5 537 84.7
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 4.2e-266 921.0 537 82.3
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 1.6e-265 919.1 534 82.8
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 3.6e-265 917.9 539 82.2
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 3.6e-265 917.9 532 83.1
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 6.1e-265 917.1 537 81.8
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 2.3e-264 915.2 540 81.9
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 1.5e-263 912.5 537 81.8
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 8.2e-262 906.7 537 79.9
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 1.4e-261 906.0 535 80.7
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 3.1e-261 904.8 537 82.1
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 4.1e-261 904.4 537 81.0
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 9.1e-261 903.3 537 81.0
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 1.2e-260 902.9 537 80.4
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 2.0e-260 902.1 531 81.4
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 3.5e-260 901.4 531 82.3
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 4.5e-260 901.0 530 81.7
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 4.5e-260 901.0 537 81.4
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 7.7e-260 900.2 537 80.6
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 1.0e-259 899.8 537 81.6
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 1.3e-259 899.4 537 81.9
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 2.2e-259 898.7 537 81.9
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 2.2e-259 898.7 538 81.8
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 2.2e-259 898.7 538 80.7
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 2.9e-259 898.3 537 80.4
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 3.8e-259 897.9 537 81.0
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 8.5e-259 896.7 537 81.4
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 8.5e-259 896.7 558 78.7
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 1.1e-258 896.3 537 81.4
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 1.1e-258 896.3 537 81.0
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 2.5e-258 895.2 537 81.0
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 1.6e-257 892.5 535 80.6
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 2.7e-257 891.7 558 78.0
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 1.0e-256 889.8 535 80.0
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 1.8e-256 889.0 537 80.6
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 4.0e-256 887.9 537 80.4
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 5.2e-256 887.5 537 80.4
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 9.7e-255 883.2 537 80.3
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 2.7e-252 875.2 684 67.3
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.3e-251 872.8 531 79.5
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 1.3e-251 872.8 532 79.5
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 3.8e-251 871.3 535 80.4
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 3.8e-251 871.3 529 78.4
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 2.5e-250 868.6 496 86.3
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.5e-250 868.6 495 86.5
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 1.6e-249 865.9 537 80.3
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 1.8e-248 862.4 529 77.9
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 5.5e-242 840.9 668 66.8
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 1.9e-234 815.8 541 73.9
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 2.6e-231 805.4 561 71.3
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 3.4e-223 778.5 535 69.7
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 5.4e-221 771.2 527 69.8
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 2.1e-220 769.2 531 69.1
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 2.8e-217 758.8 528 69.9
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 5.2e-216 754.6 537 72.3
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 6.4e-214 747.7 542 66.4
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 3.4e-207 725.3 442 81.4
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 2.2e-206 722.6 533 64.4
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 1.7e-203 713.0 404 83.4
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 4.9e-198 694.9 529 63.7
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 2.3e-195 686.0 496 67.7
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 2.5e-194 682.6 527 63.4
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 2.4e-189 666.0 374 84.8
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 2.1e-185 652.9 497 68.2
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 8.1e-185 651.0 422 77.0
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 7.7e-167 591.3 705 51.5
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 2.0e-143 513.5 301 83.4
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 8.8e-139 498.0 539 51.6
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 6.3e-129 465.3 312 74.4
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 2.4e-120 436.8 542 47.6
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 1.3e-105 387.9 262 73.3
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 9.5e-101 371.7 413 50.1
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 1.2e-82 311.6 186 81.2
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 3.0e-70 270.4 148 87.2
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 5.3e-59 233.0 148 75.0
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 1.7e-44 184.9 142 64.8
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 2.8e-44 184.1 116 78.4
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 1.9e-40 171.4 169 53.3
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 2.3e-38 164.5 112 75.9
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 6.7e-38 162.9 95 80.0
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 2.9e-33 147.5 94 76.6
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 8.8e-22 109.4 97 64.9
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 6.3e-20 103.2 104 59.6
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 4.2e-16 90.5 46 89.1
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 8.8e-14 82.8 61 68.9
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 3.4e-13 80.9 44 88.6
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 3.4e-13 80.9 44 88.6
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 4.4e-13 80.5 45 84.4
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 1.1e-11 75.9 48 81.2
RcHm_v2.0_Chr7g0219111 Rosa chinensis HOM05D004282 ORTHO05D022242 5.4e-11 73.6 78 61.5
A09p35740 Brassica napus HOM05D004282 ORTHO05D017169 8.6e-09 66.2 40 77.5
A09p59280 Brassica napus HOM05D004282 ORTHO05D017169 8.6e-09 66.2 40 77.5
BraA09t41310Z Brassica rapa HOM05D004282 ORTHO05D017169 8.6e-09 66.2 40 77.5
EL10Ac3g07448 Beta vulgaris HOM05D003983 ORTHO05D004562 3.3e-08 64.3 208 26.0
Ca_12957_v3 Cicer arietinum L. HOM05D004282 ORTHO05D149096 7.2e-08 63.2 47 63.8
Hund19014 Selenicereus undatus HOM05D003983 ORTHO05D004562 1.2e-07 62.4 204 26.5
Ca_07210_v3 Cicer arietinum L. HOM05D004282 ORTHO05D147921 3.6e-07 60.8 64 48.4
AUR62020869 Chenopodium quinoa HOM05D003983 ORTHO05D004562 6.1e-07 60.1 208 25.0
A03p47680 Brassica napus HOM05D004282 ORTHO05D017169 1.0e-06 59.3 37 75.7
BraA09t37854Z Brassica rapa HOM05D004282 ORTHO05D017169 1.0e-06 59.3 37 75.7
Ah.04g149470 Amaranthus hybridus HOM05D003983 ORTHO05D004562 1.4e-06 58.9 208 25.0
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 1.8e-06 58.5 41 68.3
Lj5A229G54 Lonicera japonica HOM05D001661 ORTHO05D001575 2.3e-06 58.2 102 37.3
Ah.13g077910 Amaranthus hybridus HOM05D007596 ORTHO05D004562 3.0e-06 57.8 123 30.9
Migut.H01123 Erythranthe guttata HOM05D003754 ORTHO05D004530 3.0e-06 57.8 183 30.6
Mapoly0037s0136 Marchantia polymorpha HOM05D003983 ORTHO05D004562 6.8e-06 56.6 211 26.5
PRCOL_00000049 Prasinoderma coloniale HOM05D003983 ORTHO05D004562 8.9e-06 56.2 205 26.3


User provided reference genes

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