Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 1.4e-122 443.0 220 100.0
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 1.6e-83 313.2 219 76.3
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 1.7e-80 303.1 218 74.8
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 1.9e-79 299.7 218 74.3
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 4.5e-73 278.5 209 70.8
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 4.5e-73 278.5 209 70.8
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 5.9e-73 278.1 209 70.8
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.7e-72 276.6 223 67.7
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 5.0e-72 275.0 225 68.4
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 1.1e-71 273.9 221 67.4
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 1.4e-71 273.5 206 70.9
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 1.6e-70 270.0 196 70.9
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 4.6e-70 268.5 225 66.2
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 6.1e-70 268.1 218 67.9
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 7.9e-70 267.7 221 67.4
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 1.3e-69 266.9 204 69.6
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 2.3e-69 266.2 225 65.3
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 3.0e-69 265.8 204 69.1
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 3.9e-69 265.4 209 67.9
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 8.7e-69 264.2 200 69.5
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 1.1e-68 263.8 223 67.7
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 1.9e-68 263.1 207 68.1
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 1.9e-68 263.1 217 65.9
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 2.5e-68 262.7 218 67.0
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 2.5e-68 262.7 200 71.0
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 7.4e-68 261.2 198 69.7
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 7.4e-68 261.2 204 68.6
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 7.4e-68 261.2 218 66.1
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 9.7e-68 260.8 153 85.6
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 1.3e-67 260.4 204 68.1
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 1.3e-67 260.4 204 68.6
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 1.6e-67 260.0 199 69.8
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.6e-67 260.0 214 66.4
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 1.6e-67 260.0 217 66.4
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 1.6e-67 260.0 214 66.8
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 2.2e-67 259.6 213 66.7
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.8e-67 259.2 151 84.8
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.7e-67 258.8 214 65.9
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 6.3e-67 258.1 188 73.4
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 1.4e-66 256.9 188 72.9
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 1.8e-66 256.5 221 64.7
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.4e-66 256.1 214 65.9
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.4e-66 256.1 152 84.9
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 3.1e-66 255.8 215 67.4
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 4.1e-66 255.4 224 62.5
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 4.1e-66 255.4 210 69.0
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 5.3e-66 255.0 197 69.0
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.3e-66 255.0 152 84.2
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 5.3e-66 255.0 222 65.3
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 6.9e-66 254.6 148 84.5
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.5e-65 253.4 221 65.6
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 1.5e-65 253.4 217 65.9
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.5e-65 253.4 152 83.6
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.5e-65 253.4 217 65.9
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.5e-65 253.4 217 65.9
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 2.0e-65 253.1 218 66.5
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 2.6e-65 252.7 172 73.8
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 3.4e-65 252.3 151 82.8
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 4.5e-65 251.9 215 64.7
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 4.5e-65 251.9 219 64.4
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 5.9e-65 251.5 176 74.4
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 5.9e-65 251.5 176 74.4
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 7.7e-65 251.1 218 64.2
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 7.7e-65 251.1 173 75.7
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 7.7e-65 251.1 173 75.7
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.0e-64 250.8 176 74.4
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.3e-64 250.4 189 69.8
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.3e-64 250.4 220 65.0
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 1.7e-64 250.0 206 66.5
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.7e-64 250.0 220 65.0
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 1.7e-64 250.0 203 67.0
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 1.7e-64 250.0 203 67.0
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 1.7e-64 250.0 217 65.4
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 5.0e-64 248.4 190 68.9
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 8.5e-64 247.7 160 80.0
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.1e-63 247.3 222 61.7
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 1.1e-63 247.3 218 62.8
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 1.9e-63 246.5 205 66.8
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 1.9e-63 246.5 176 72.7
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 3.2e-63 245.7 218 64.2
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 3.2e-63 245.7 169 76.3
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 3.2e-63 245.7 271 53.9
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 3.2e-63 245.7 183 67.8
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 4.2e-63 245.4 218 62.4
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 4.2e-63 245.4 225 63.1
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 5.5e-63 245.0 154 79.2
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 5.5e-63 245.0 195 68.2
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 5.5e-63 245.0 151 81.5
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 2.7e-62 242.7 152 80.3
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 3.6e-62 242.3 153 77.8
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 4.6e-62 241.9 153 77.8
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 2.3e-61 239.6 155 80.6
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 3.0e-61 239.2 225 60.0
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 4.4e-60 235.3 154 75.3
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 5.7e-60 235.0 219 63.5
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 1.7e-59 233.4 196 63.8
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.7e-59 232.3 153 76.5
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.7e-59 232.3 192 66.1
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 4.8e-59 231.9 202 63.4
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.3e-59 231.5 232 58.6
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 5.3e-58 228.4 220 60.9
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 6.9e-58 228.0 151 76.8
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 2.6e-57 226.1 221 58.8
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 7.7e-57 224.6 212 59.9
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 1.0e-56 224.2 226 56.6
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 1.3e-56 223.8 175 68.0
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.9e-56 222.6 215 59.1
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 5.5e-55 218.4 146 76.0
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.2e-54 217.2 219 58.0
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 2.7e-54 216.1 170 67.6
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 5.2e-53 211.8 118 86.4
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 3.3e-52 209.1 219 55.3
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 1.7e-51 206.8 294 45.9
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 5.9e-49 198.4 193 58.5
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 5.9e-49 198.4 151 67.5
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 5.9e-49 198.4 152 67.8
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 7.7e-49 198.0 223 56.5
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 5.0e-48 195.3 189 56.1
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.9e-47 193.4 218 50.5
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.9e-47 193.4 218 50.5
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 1.6e-46 190.3 194 55.2
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 3.6e-46 189.1 168 60.1
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.2e-44 184.1 229 52.0
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 3.3e-44 182.6 119 76.5
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 1.7e-43 180.3 100 89.0
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 2.8e-43 179.5 133 70.7
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 1.4e-42 177.2 221 49.8
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 5.2e-37 158.7 177 48.6
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 2.0e-36 156.8 169 49.1
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 2.0e-36 156.8 233 46.4
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 3.4e-36 156.0 94 77.7
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 8.3e-35 151.4 131 56.5
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 2.0e-33 146.7 131 53.4
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 1.5e-31 140.6 115 56.5
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 2.5e-31 139.8 106 58.5
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 4.2e-31 139.0 79 86.1
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 8.0e-30 134.8 183 45.4
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.1e-26 122.9 67 88.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.1e-26 122.9 67 88.1
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 3.1e-26 122.9 79 77.2
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 5.0e-24 115.5 141 53.9
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 1.2e-20 104.4 145 46.9
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 1.7e-19 100.5 70 71.4
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 2.8e-14 83.2 50 78.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 1.0e-13 81.3 121 39.7
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 8.6e-08 61.6 63 55.6
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 2.5e-07 60.1 38 76.3


User provided reference genes

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