Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 1.9e-284 981.9 515 100.0
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 1.7e-248 862.4 516 85.1
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 3.2e-247 858.2 518 85.5
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 1.2e-246 856.3 515 83.7
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 1.8e-218 762.7 513 75.4
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 2.4e-218 762.3 515 76.5
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 4.1e-218 761.5 516 74.2
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 9.1e-218 760.4 514 74.9
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 1.2e-217 760.0 519 75.3
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 2.0e-217 759.2 513 73.7
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 2.0e-217 759.2 516 74.4
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 2.6e-217 758.8 515 74.6
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 2.6e-217 758.8 516 75.2
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 4.5e-217 758.1 513 73.5
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 4.5e-217 758.1 514 74.9
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 7.7e-217 757.3 513 73.5
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 1.3e-216 756.5 513 77.2
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 1.7e-216 756.1 514 74.7
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 2.9e-216 755.4 518 77.8
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 2.9e-216 755.4 508 75.0
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 7.2e-215 750.7 527 71.9
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 9.4e-215 750.4 515 74.4
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 3.6e-214 748.4 515 74.8
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 4.7e-214 748.0 515 75.0
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 6.1e-214 747.7 516 73.1
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 6.1e-214 747.7 516 74.2
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 6.1e-214 747.7 516 75.4
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 1.0e-213 746.9 527 72.1
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 1.4e-213 746.5 517 76.6
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.5e-212 743.0 515 73.8
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.6e-212 742.3 515 74.0
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 3.3e-212 741.9 515 72.4
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 7.5e-212 740.7 519 72.4
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 9.7e-212 740.3 572 68.5
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 2.2e-211 739.2 516 72.1
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 5.3e-210 734.6 522 72.6
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 1.6e-209 733.0 529 73.9
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 4.5e-209 731.5 520 71.7
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 2.2e-208 729.2 496 76.4
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 2.9e-208 728.8 516 75.4
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 8.5e-208 727.2 518 74.5
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 8.5e-208 727.2 513 72.3
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 4.8e-203 711.4 515 70.1
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 1.4e-202 709.9 521 68.9
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 2.4e-202 709.1 515 69.9
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 4.1e-202 708.4 516 71.1
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 3.5e-201 705.3 593 65.6
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 2.3e-197 692.6 515 67.0
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 2.0e-196 689.5 513 67.6
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 2.0e-196 689.5 515 67.2
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 5.7e-196 688.0 515 69.5
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 2.8e-195 685.6 515 66.0
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 6.3e-195 684.5 516 67.6
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 4.3e-191 671.8 515 66.8
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 5.6e-191 671.4 529 66.4
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 1.2e-188 663.7 512 66.8
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.5e-188 663.3 529 64.5
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 5.8e-188 661.4 521 64.7
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 5.8e-188 661.4 516 68.0
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 1.9e-186 656.4 523 64.8
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 2.4e-186 656.0 515 70.1
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 5.4e-186 654.8 512 69.9
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 1.2e-185 653.7 529 68.1
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 2.5e-183 646.0 522 68.6
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 1.2e-182 643.7 510 64.1
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 3.6e-182 642.1 524 61.8
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 8.0e-182 641.0 470 71.3
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 4.0e-181 638.6 535 66.4
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 6.8e-181 637.9 518 64.3
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 1.2e-180 637.1 542 62.2
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 1.3e-179 633.6 520 67.7
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 4.9e-179 631.7 527 61.1
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 1.1e-178 630.6 527 66.2
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 1.4e-178 630.2 520 67.5
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 1.4e-178 630.2 520 67.5
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 1.4e-178 630.2 520 67.5
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 1.9e-178 629.8 520 67.3
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 1.2e-177 627.1 534 61.6
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 2.1e-177 626.3 464 70.3
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 2.3e-176 622.9 520 59.6
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 1.9e-175 619.8 404 78.7
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 3.6e-174 615.5 567 61.4
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 1.1e-173 614.0 569 61.7
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 8.9e-173 610.9 537 63.3
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 7.8e-169 597.8 504 62.3
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 3.8e-163 578.9 518 58.5
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 8.1e-158 561.2 405 68.9
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 4.9e-155 552.0 367 76.3
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 9.6e-151 537.7 514 55.1
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 7.6e-148 528.1 360 74.7
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 1.9e-127 460.3 276 81.9
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 1.1e-125 454.5 383 64.0
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 2.0e-116 423.7 509 49.5
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 2.7e-113 413.3 475 54.9
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 1.5e-108 397.5 517 41.6
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 1.0e-107 394.8 554 43.5
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 3.2e-106 389.8 527 41.7
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 8.5e-99 365.2 498 46.8
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 1.5e-98 364.4 256 70.3
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 5.7e-95 352.4 256 69.9
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 5.2e-88 329.3 208 78.4
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.8e-85 320.9 558 37.5
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 1.1e-82 311.6 239 69.0
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 3.3e-82 310.1 263 59.3
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 2.0e-79 300.8 466 41.8
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 1.1e-77 295.0 185 80.0
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 8.6e-75 285.4 223 66.4
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 4.1e-69 266.5 241 66.4
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 9.5e-66 255.4 260 45.4
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 4.3e-58 229.9 240 46.7
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 6.2e-57 226.1 214 58.4
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 2.9e-54 217.2 485 28.5
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 5.1e-51 206.5 248 51.2
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 4.4e-47 193.4 188 54.8
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 1.4e-45 188.3 148 60.8
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 2.8e-41 174.1 442 31.4
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 6.2e-41 172.9 181 57.5
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 9.0e-40 169.1 258 42.6
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 3.4e-31 140.6 503 28.4
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 1.0e-27 129.0 107 59.8
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 3.3e-26 124.0 82 76.8
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 1.1e-24 119.0 183 41.5
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 2.0e-23 114.8 112 53.6
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 2.2e-22 111.3 126 50.8
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 1.1e-21 109.0 121 47.9
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 1.9e-18 98.2 105 51.4
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 4.3e-18 97.1 183 37.7
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 9.0e-16 89.4 51 70.6
QL02p028464 Quercus lobata HOM05D005847 ORTHO05D007143 7.9e-12 76.3 95 46.3
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 5.3e-08 63.5 49 61.2
Medtr8g040530 Medicago truncatula HOM05D005847 ORTHO05D007143 1.7e-06 58.5 92 35.9
Sabra03G0104700 Salix brachista HOM05D005847 ORTHO05D007143 2.2e-06 58.2 180 28.3


User provided reference genes

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