Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 9.5e-96 353.6 191 100.0
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 6.0e-82 307.8 190 85.8
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.7e-81 306.2 186 90.3
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 1.7e-81 306.2 190 84.7
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 3.9e-81 305.1 185 88.6
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 4.3e-80 301.6 186 89.2
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 4.3e-80 301.6 192 84.9
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 1.2e-79 300.1 192 83.3
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 1.2e-79 300.1 192 83.3
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 3.6e-79 298.5 192 83.9
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 8.1e-79 297.4 191 83.2
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 1.1e-78 297.0 192 83.3
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 2.4e-78 295.8 192 81.8
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 2.4e-78 295.8 193 83.4
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 4.0e-78 295.0 180 85.6
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 4.4e-77 291.6 192 82.3
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 5.8e-77 291.2 178 86.5
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 9.9e-77 290.4 190 82.1
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 9.9e-77 290.4 192 81.8
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 9.9e-77 290.4 192 82.3
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 1.3e-76 290.0 192 81.8
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 1.3e-76 290.0 190 82.1
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 4.9e-76 288.1 196 81.1
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 1.1e-75 287.0 192 79.7
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 2.4e-75 285.8 190 80.5
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 4.2e-75 285.0 185 81.1
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 5.4e-75 284.6 188 79.3
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 9.3e-75 283.9 172 87.2
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 3.5e-74 282.0 192 77.6
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 7.8e-74 280.8 192 77.1
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.7e-73 279.6 182 81.3
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 1.7e-73 279.6 190 79.5
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 3.0e-73 278.9 191 78.0
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 3.9e-73 278.5 190 78.9
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 3.9e-73 278.5 192 77.6
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 8.7e-73 277.3 199 74.9
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 7.3e-72 274.2 173 86.7
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 7.3e-72 274.2 191 77.0
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 1.3e-71 273.5 190 79.5
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 2.8e-71 272.3 189 78.8
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 4.8e-71 271.6 191 77.5
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 8.1e-71 270.8 184 77.7
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 1.1e-70 270.4 190 77.9
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 1.4e-70 270.0 158 86.1
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 1.8e-70 269.6 192 76.6
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 2.4e-70 269.2 191 77.0
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 2.4e-70 269.2 200 73.0
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 2.4e-70 269.2 200 73.0
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 3.1e-70 268.9 202 73.8
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 3.1e-70 268.9 191 77.5
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 4.0e-70 268.5 189 75.1
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 5.3e-70 268.1 197 73.1
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 6.9e-70 267.7 155 87.7
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 9.0e-70 267.3 195 75.4
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.5e-69 266.5 191 76.4
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 1.5e-69 266.5 158 84.8
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 1.5e-69 266.5 189 76.2
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 1.5e-69 266.5 168 81.0
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 3.4e-69 265.4 189 75.7
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 4.5e-69 265.0 199 71.9
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 5.8e-69 264.6 193 74.6
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 7.6e-69 264.2 193 74.6
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 7.6e-69 264.2 189 74.6
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 9.9e-69 263.8 191 72.3
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 9.9e-69 263.8 203 71.4
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 1.7e-68 263.1 204 71.1
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 1.7e-68 263.1 204 71.1
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 2.2e-68 262.7 193 74.1
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.9e-68 262.3 204 71.1
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 6.4e-68 261.2 184 72.8
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 8.4e-68 260.8 191 72.3
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.4e-67 260.0 191 71.7
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 1.4e-67 260.0 191 73.3
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.4e-67 260.0 203 71.4
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 2.4e-67 259.2 191 71.7
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 2.4e-67 259.2 176 75.6
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 3.2e-67 258.8 191 71.2
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 3.2e-67 258.8 198 71.7
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 4.2e-67 258.5 194 72.2
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 7.1e-67 257.7 191 74.9
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.2e-66 256.9 171 79.5
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 4.6e-66 255.0 189 70.9
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 4.6e-66 255.0 201 69.7
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 6.0e-66 254.6 189 73.0
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 6.0e-66 254.6 189 73.0
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 1.3e-65 253.4 190 71.6
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 1.8e-65 253.1 199 69.3
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 1.8e-65 253.1 195 69.2
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 1.8e-65 253.1 190 69.5
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 2.3e-65 252.7 210 68.6
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 2.3e-65 252.7 193 70.5
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 2.3e-65 252.7 164 77.4
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 3.0e-65 252.3 191 70.7
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 3.0e-65 252.3 189 70.4
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 1.1e-64 250.4 191 71.2
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 3.3e-64 248.8 191 72.3
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 4.3e-64 248.4 211 67.3
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 4.3e-64 248.4 153 83.0
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 5.6e-64 248.1 184 71.7
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 5.6e-64 248.1 161 77.6
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 9.6e-64 247.3 191 70.7
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 9.6e-64 247.3 182 74.2
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 1.3e-63 246.9 162 76.5
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.8e-62 243.0 172 75.0
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 5.3e-62 241.5 194 68.0
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 9.0e-62 240.7 159 75.5
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.2e-61 240.4 191 68.1
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 2.0e-61 239.6 184 71.7
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 2.6e-61 239.2 161 75.2
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 5.8e-61 238.0 193 67.4
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 2.2e-60 236.1 194 67.0
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 3.8e-60 235.3 196 67.3
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 8.4e-60 234.2 192 68.2
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 1.9e-59 233.0 158 77.2
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 1.9e-59 233.0 199 65.3
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 3.2e-59 232.3 167 75.4
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 7.1e-59 231.1 194 67.5
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 7.1e-59 231.1 169 74.6
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 7.1e-59 231.1 191 68.6
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 1.0e-57 227.3 259 55.2
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 5.1e-57 224.9 167 70.7
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 8.7e-57 224.2 168 71.4
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 1.9e-56 223.0 163 70.6
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 9.6e-56 220.7 181 68.5
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 1.4e-54 216.9 193 62.7
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 3.8e-52 208.8 191 63.4
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 8.4e-52 207.6 136 86.0
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 1.1e-51 207.2 191 62.8
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 3.2e-51 205.7 149 72.5
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 1.5e-48 196.8 179 62.6
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 1.6e-47 193.4 234 53.8
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 1.1e-46 190.7 147 67.3
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 3.1e-46 189.1 150 69.3
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 3.6e-42 175.6 111 74.8
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 3.6e-42 175.6 158 64.6
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 7.9e-42 174.5 191 57.6
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.3e-41 173.7 178 57.9
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 1.3e-41 173.7 132 67.4
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 4.3e-40 168.7 104 79.8
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 1.6e-39 166.8 167 52.1
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.0e-37 159.8 129 63.6
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 8.5e-36 154.5 130 65.4
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.1e-35 154.1 130 65.4
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.9e-35 153.3 130 65.4
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 4.2e-35 152.1 144 51.4
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 4.6e-34 148.7 130 65.4
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 3.9e-33 145.6 82 86.6
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 5.7e-32 141.7 121 62.8
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 2.8e-31 139.4 91 72.5
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 1.1e-30 137.5 154 48.7
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 5.3e-30 135.2 125 57.6
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 2.0e-29 133.3 176 41.5
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 2.0e-29 133.3 140 46.4
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 1.8e-25 120.2 182 45.1
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 5.2e-25 118.6 119 58.8
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 9.4e-19 97.8 86 66.3
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 2.7e-13 79.7 58 65.5
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 1.0e-12 77.8 79 64.6
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 5.5e-11 72.0 176 38.6
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 6.8e-09 65.1 104 47.1


User provided reference genes

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