Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G111200 Carya illinoinensis HOM05D007467 ORTHO05D009441 5.7e-83 311.2 200 100.0
COL.COLO4_10812 Corchorus olitorius HOM05D007467 ORTHO05D009441 2.3e-60 236.1 208 65.4
GSVIVG01019666001 Vitis vinifera HOM05D007467 ORTHO05D009441 2.2e-58 229.6 201 77.1
RcHm_v2.0_Chr7g0187371 Rosa chinensis HOM05D007467 ORTHO05D009441 8.2e-58 227.6 224 65.2
FAN04G1879 Fragaria x ananassa HOM05D007467 ORTHO05D009441 9.1e-57 224.2 224 68.8
FAN13G1608 Fragaria x ananassa HOM05D007467 ORTHO05D009441 1.6e-56 223.4 224 68.8
Thecc.03G219300 Theobroma cacao HOM05D007467 ORTHO05D009441 1.6e-56 223.4 261 61.3
FAN08G2920 Fragaria x ananassa HOM05D007467 ORTHO05D009441 3.5e-56 222.2 224 68.8
FvH4_5g10770 Fragaria vesca HOM05D007467 ORTHO05D009441 4.5e-56 221.9 224 68.8
FAN18G0937 Fragaria x ananassa HOM05D007467 ORTHO05D009441 4.5e-56 221.9 224 68.8
Cfa011912 Carpinus fangiana HOM05D007467 ORTHO05D009441 2.9e-55 219.2 263 63.5
Duzib084G1076 Durio zibethinus HOM05D007467 ORTHO05D009441 2.9e-55 219.2 254 57.5
Gohir.A12G240800 Gossypium hirsutum HOM05D007467 ORTHO05D009441 3.8e-55 218.8 225 58.7
Haze_09186 Corylus avellana HOM05D007467 ORTHO05D009441 6.5e-55 218.0 260 63.5
CSS0030138 Camellia sinensis var. sinensis HOM05D007467 ORTHO05D009441 1.1e-54 217.2 241 65.1
Gohir.D12G242100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 9.4e-54 214.2 225 57.3
Gorai.008G259400 Gossypium raimondii HOM05D007467 ORTHO05D009441 9.4e-54 214.2 225 57.3
QL02p027667 Quercus lobata HOM05D007467 ORTHO05D009441 2.7e-53 212.6 278 59.0
Duzib205G1912 Durio zibethinus HOM05D007467 ORTHO05D009441 4.7e-53 211.8 260 59.6
Potri.001G082600 Populus trichocarpa HOM05D007467 ORTHO05D009441 3.0e-52 209.1 266 59.8
Prupe.5G131500 Prunus persica HOM05D007467 ORTHO05D009441 6.8e-52 208.0 278 54.3
Sabra01G0059300 Salix brachista HOM05D007467 ORTHO05D009441 7.5e-51 204.5 266 59.4
CAN.G567.94 Capsicum annuum HOM05D007467 ORTHO05D009441 2.2e-50 203.0 222 65.3
Ciclev10020958m.g Citrus clementina HOM05D007467 ORTHO05D009441 3.7e-50 202.2 259 61.4
Peaxi162Scf00074g00113 Petunia axillaris HOM05D007467 ORTHO05D009441 4.8e-50 201.8 238 62.6
MD06G1120900 Malus domestica HOM05D007467 ORTHO05D009441 1.1e-49 200.7 257 54.5
HanXRQChr07g0192371 Helianthus annuus HOM05D007467 ORTHO05D009441 1.8e-49 199.9 209 67.9
Potri.003G147900 Populus trichocarpa HOM05D007467 ORTHO05D009441 2.4e-49 199.5 261 59.8
Nitab4.5_0008141g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 1.2e-48 197.2 240 62.1
Nitab4.5_0002720g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 7.7e-48 194.5 240 61.7
Rhsim02G0253000 Rhododendron simsii HOM05D007467 ORTHO05D009441 1.0e-47 194.1 240 59.6
MD14G1137500 Malus domestica HOM05D007467 ORTHO05D009441 1.3e-47 193.7 257 47.1
Manes.02G001700 Manihot esculenta HOM05D007467 ORTHO05D009441 8.6e-47 191.0 243 51.0
vmacro11497 Vaccinium macrocarpon HOM05D007467 ORTHO05D009441 8.6e-47 191.0 239 59.0
Atru.chr9.1852 Acer truncatum HOM05D007467 ORTHO05D009441 1.1e-46 190.7 249 61.0
Sabra03G0107500 Salix brachista HOM05D007467 ORTHO05D009441 4.2e-46 188.7 255 58.4
Nn1g00417 Nelumbo nucifera HOM05D007467 ORTHO05D009441 7.2e-46 188.0 250 49.2
Oeu013372.1 Olea europaea HOM05D007467 ORTHO05D009441 4.7e-45 185.3 241 57.7
TWI60G0745 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 4.7e-45 185.3 290 52.1
TWI15G0957 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 4.0e-44 182.2 294 43.9
Lsat_1_v5_gn_6_10100 Lactuca sativa HOM05D007467 ORTHO05D009441 5.2e-44 181.8 221 52.0
Cc08_g16860 Coffea canephora HOM05D007467 ORTHO05D009441 8.9e-44 181.0 198 65.7
DCAR_006558 Daucus carota HOM05D007467 ORTHO05D009441 2.0e-43 179.9 242 50.4
Gohir.D09G183100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 2.0e-43 179.9 213 63.4
Gorai.006G205400 Gossypium raimondii HOM05D007467 ORTHO05D009441 2.0e-43 179.9 213 63.4
MSTRG.13707 Avicennia marina HOM05D007467 ORTHO05D009441 3.4e-43 179.1 243 59.7
Gohir.A09G188250 Gossypium hirsutum HOM05D007467 ORTHO05D009441 3.4e-43 179.1 214 62.6
ECA233G1457 Erigeron canadensis HOM05D007467 ORTHO05D009441 5.7e-43 178.3 211 67.8
Aqoxy7G00009 Aquilegia oxysepala HOM05D007467 ORTHO05D009441 1.3e-42 177.2 227 59.9
PGSC0003DMG400012234 Solanum tuberosum HOM05D007467 ORTHO05D009441 1.3e-42 177.2 224 58.0
Hma1.2p1_0456F.1_g156740 Hydrangea macrophylla HOM05D007467 ORTHO05D009441 8.3e-42 174.5 236 57.6
TAR629G1879 Trochodendron aralioides HOM05D007467 ORTHO05D009441 8.3e-42 174.5 229 62.4
TAR636G1420 Trochodendron aralioides HOM05D007467 ORTHO05D009441 1.4e-41 173.7 212 51.4
Lj2P155T22 Lonicera japonica HOM05D007467 ORTHO05D009441 2.4e-41 172.9 214 63.6
Solyc08g083220.1 Solanum lycopersicum HOM05D007467 ORTHO05D009441 2.7e-40 169.5 196 59.7
Oeu042839.1 Olea europaea HOM05D007467 ORTHO05D009441 4.5e-40 168.7 245 56.3
Sopen08g031410 Solanum pennellii HOM05D007467 ORTHO05D009441 7.8e-40 167.9 201 58.2
MBI04_g15581_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 1.7e-39 166.8 220 49.1
Dinv18747 Davidia involucrata HOM05D007467 ORTHO05D009441 5.0e-39 165.2 187 66.8
MBI04_g43054_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 5.0e-39 165.2 220 48.6
Aa31LG2G1740 Aethionema arabicum HOM05D007467 ORTHO05D009441 9.5e-38 161.0 208 58.7
CANSAT21G0614 Cannabis sativa HOM05D007467 ORTHO05D009441 3.0e-36 156.0 255 51.4
ClCG01G001480 Citrullus lanatus HOM05D007467 ORTHO05D009441 4.0e-36 155.6 249 53.0
Eucgr.E01052 Eucalyptus grandis HOM05D007467 ORTHO05D009441 4.0e-36 155.6 303 48.2
CARHR046220 Cardamine hirsuta HOM05D007467 ORTHO05D009441 1.2e-35 154.1 203 48.8
BcaC04g22507 Brassica carinata HOM05D007467 ORTHO05D009441 1.5e-35 153.7 197 56.9
PGR042G1595 Punica granatum HOM05D007467 ORTHO05D009441 1.5e-35 153.7 240 55.4
MELO3C005789.2 Cucumis melo HOM05D007467 ORTHO05D009441 5.8e-35 151.8 246 52.0
CsaV3_5G001620 Cucumis sativus L. HOM05D007467 ORTHO05D009441 7.0e-33 144.8 248 51.6
MBI12_g21574_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 7.8e-32 141.4 207 56.5
Sed0003485 Sechium edule HOM05D007467 ORTHO05D009441 7.3e-30 134.8 237 51.5
A09p15270 Brassica napus HOM05D007467 ORTHO05D009441 2.1e-29 133.3 197 53.3
BraA09t37173Z Brassica rapa HOM05D007467 ORTHO05D009441 2.1e-29 133.3 197 53.3
Carub.0002s0004 Capsella rubella HOM05D007467 ORTHO05D009441 3.6e-29 132.5 204 55.9
Oeu022032.1 Olea europaea HOM05D007467 ORTHO05D009441 4.7e-29 132.1 129 57.4
C09p18550 Brassica napus HOM05D007467 ORTHO05D009441 1.1e-28 131.0 197 51.8
BolC9t54751H Brassica oleracea HOM05D007467 ORTHO05D009441 1.1e-28 131.0 197 51.8
Nn3g18852 Nelumbo nucifera HOM05D007467 ORTHO05D009441 1.8e-28 130.2 226 49.6
Sp2g00870 Schrenkiella parvula HOM05D007467 ORTHO05D009441 4.0e-28 129.0 201 53.2
THA.LOC104823626 Tarenaya hassleriana HOM05D007467 ORTHO05D009441 5.2e-28 128.6 217 47.0
SGA_v2.0_scaffold267G46175 Striga asiatica HOM05D007467 ORTHO05D009441 3.4e-27 125.9 170 57.6
Thhalv10023631m.g Eutrema salsugineum HOM05D007467 ORTHO05D009441 3.7e-26 122.5 205 41.5
PSO782G5165 Papaver somniferum HOM05D007467 ORTHO05D009441 4.9e-26 122.1 234 50.0
BcaB07g31413 Brassica carinata HOM05D007467 ORTHO05D009441 6.4e-26 121.7 197 52.3
PSO478G5135 Papaver somniferum HOM05D007467 ORTHO05D009441 1.9e-25 120.2 234 45.3
AUR62007067 Chenopodium quinoa HOM05D007467 ORTHO05D009441 1.0e-23 114.4 234 38.9
CDE02G3312 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 3.3e-22 109.4 228 38.6
Zm00001eb023700 Zea mays HOM05D007467 ORTHO05D009441 4.3e-22 109.0 224 45.1
AL2G10070 Arabidopsis lyrata HOM05D007467 ORTHO05D009441 7.3e-22 108.2 202 53.0
AUR62019932 Chenopodium quinoa HOM05D007467 ORTHO05D009441 9.5e-22 107.8 226 40.3
AT1G64690 Arabidopsis thaliana HOM05D007467 ORTHO05D009441 2.1e-21 106.7 202 52.0
Actinidia22211 Actinidia chinensis HOM05D007467 ORTHO05D009441 1.4e-20 104.0 67 71.6
PGSC0003DMG400013732 Solanum tuberosum HOM05D007467 ORTHO05D009441 1.4e-20 104.0 135 46.7
Ah.12g053280 Amaranthus hybridus HOM05D007467 ORTHO05D009441 7.5e-19 98.2 143 45.5
EL10Ac5g12411 Beta vulgaris HOM05D007467 ORTHO05D009441 3.7e-18 95.9 190 38.4
ATR0579G156 Amborella trichopoda HOM05D007467 ORTHO05D009441 3.0e-15 86.3 198 34.8
Os10g0562600 Oryza sativa ssp. japonica HOM05D007467 ORTHO05D009441 2.4e-12 76.6 203 37.4
CDE11G0649 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 4.9e-10 68.9 195 32.3
ClCG00G001110 Citrullus lanatus HOM05D007467 ORTHO05D009441 3.0e-07 59.7 83 72.3
QL05p073305 Quercus lobata HOM05D002166 ORTHO05D002634 1.9e-06 57.0 58 43.1
AL6G33320 Arabidopsis lyrata HOM05D002319 ORTHO05D002374 4.3e-06 55.8 140 41.4
Thhalv10013403m.g Eutrema salsugineum HOM05D002319 ORTHO05D002374 5.6e-06 55.5 64 51.6
Sed0003279 Sechium edule HOM05D002166 ORTHO05D002634 5.6e-06 55.5 237 26.6
Prupe.4G021500 Prunus persica HOM05D002166 ORTHO05D002634 7.3e-06 55.1 47 53.2
AT5G22310 Arabidopsis thaliana HOM05D002319 ORTHO05D002374 9.6e-06 54.7 111 55.0
CSS0020708 Camellia sinensis var. sinensis HOM05D002319 ORTHO05D002374 9.6e-06 54.7 66 54.5
Cfa000231 Carpinus fangiana HOM05D002166 ORTHO05D002634 9.6e-06 54.7 55 43.6
Ciclev10027982m.g Citrus clementina HOM05D002319 ORTHO05D002374 9.6e-06 54.7 45 66.7
Nn6g34794 Nelumbo nucifera HOM05D002319 ORTHO05D002374 9.6e-06 54.7 133 36.8


User provided reference genes

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