Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 6.7e-64 247.7 173 100.0
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 2.3e-56 222.6 173 80.3
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.2e-49 200.3 177 84.2
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 1.6e-49 199.9 175 73.7
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 2.7e-49 199.1 177 85.9
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 6.1e-49 198.0 172 84.9
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.8e-48 196.4 173 71.1
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 1.5e-47 193.4 173 70.5
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 2.5e-47 192.6 171 68.4
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.5e-47 192.6 171 68.4
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.5e-47 192.6 171 68.4
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 3.3e-47 192.2 177 71.2
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 5.7e-47 191.4 175 72.0
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 7.4e-47 191.0 167 72.5
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 1.3e-46 190.3 173 80.3
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.6e-46 189.9 173 67.6
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 6.3e-46 188.0 170 82.9
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.1e-45 187.2 170 82.9
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 1.1e-45 187.2 170 82.9
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 1.8e-45 186.4 173 71.1
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 3.1e-45 185.7 171 67.3
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 4.1e-45 185.3 175 69.1
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 6.9e-45 184.5 177 57.6
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 9.0e-45 184.1 172 72.1
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 9.0e-45 184.1 173 69.9
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 1.5e-44 183.3 174 82.8
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 2.0e-44 183.0 174 82.2
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 3.4e-44 182.2 174 82.2
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 4.5e-44 181.8 173 69.9
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 4.5e-44 181.8 167 71.3
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 5.9e-44 181.4 175 66.9
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 7.7e-44 181.0 173 69.4
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 1.7e-43 179.9 173 80.3
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 3.8e-43 178.7 175 78.3
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 5.0e-43 178.3 175 81.7
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 5.0e-43 178.3 175 81.7
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 8.5e-43 177.6 165 78.8
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 1.1e-42 177.2 173 76.9
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.4e-42 176.8 174 67.8
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 1.9e-42 176.4 173 70.5
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 2.5e-42 176.0 173 80.3
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 5.5e-42 174.9 175 79.4
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 7.2e-42 174.5 173 73.4
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 7.2e-42 174.5 173 80.9
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 7.2e-42 174.5 175 66.9
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 9.4e-42 174.1 174 67.2
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.2e-41 173.7 173 67.6
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 1.2e-41 173.7 173 78.6
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 1.6e-41 173.3 177 77.4
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 2.1e-41 172.9 173 71.7
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 3.6e-41 172.2 164 70.7
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 3.6e-41 172.2 174 75.9
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 6.1e-41 171.4 171 66.7
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 6.1e-41 171.4 240 44.2
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 1.0e-40 170.6 173 80.3
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 1.8e-40 169.9 167 65.9
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 2.3e-40 169.5 173 79.2
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 2.3e-40 169.5 171 76.0
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 3.0e-40 169.1 167 66.5
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 3.0e-40 169.1 174 79.3
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 3.9e-40 168.7 173 76.9
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 8.8e-40 167.5 170 75.9
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 2.0e-39 166.4 173 78.0
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 3.3e-39 165.6 163 79.1
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 4.3e-39 165.2 164 79.9
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 5.7e-39 164.9 170 77.1
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 7.4e-39 164.5 173 75.7
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 7.4e-39 164.5 173 75.7
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 9.7e-39 164.1 170 75.3
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 9.7e-39 164.1 173 64.2
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 1.7e-38 163.3 173 75.7
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 2.2e-38 162.9 166 75.3
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.8e-38 162.5 170 75.3
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 2.8e-38 162.5 173 67.6
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 4.8e-38 161.8 173 76.9
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 4.8e-38 161.8 170 75.9
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 4.8e-38 161.8 173 68.2
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 6.3e-38 161.4 173 60.7
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 8.2e-38 161.0 159 80.5
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.4e-37 160.2 174 74.7
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 1.8e-37 159.8 173 71.1
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 4.1e-37 158.7 168 64.9
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 5.3e-37 158.3 163 75.5
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 1.5e-36 156.8 174 71.8
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 7.7e-36 154.5 164 63.4
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 1.7e-35 153.3 173 61.8
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 2.2e-35 152.9 173 62.4
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 2.9e-35 152.5 173 54.3
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 2.5e-34 149.4 153 79.7
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 2.5e-34 149.4 153 79.7
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 7.2e-34 147.9 173 60.1
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 7.2e-34 147.9 174 59.8
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 7.2e-34 147.9 173 74.6
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 1.0e-32 144.1 169 60.9
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.4e-32 143.7 177 63.3
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.4e-32 143.7 182 57.1
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 2.3e-32 142.9 167 73.1
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 5.1e-32 141.7 173 58.4
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 5.1e-32 141.7 176 72.2
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 6.7e-32 141.4 165 53.3
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 8.8e-32 141.0 168 72.6
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.1e-31 140.6 173 50.3
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 2.6e-31 139.4 173 49.7
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 3.3e-31 139.0 169 59.2
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 3.3e-31 139.0 176 71.6
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 5.7e-31 138.3 177 71.2
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 5.7e-31 138.3 171 70.8
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 7.4e-31 137.9 171 70.8
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 7.4e-31 137.9 171 70.8
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 9.7e-31 137.5 171 70.2
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 9.7e-31 137.5 168 58.9
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 1.3e-30 137.1 167 58.1
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 1.3e-30 137.1 167 58.1
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 1.3e-30 137.1 164 48.8
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.3e-30 137.1 166 59.6
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 2.2e-30 136.3 169 72.2
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 2.8e-30 136.0 176 67.0
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.8e-30 136.0 167 49.7
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 6.3e-30 134.8 173 57.2
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 6.3e-30 134.8 173 57.2
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 8.2e-30 134.4 155 60.0
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 1.1e-29 134.0 172 69.8
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.1e-29 134.0 173 56.6
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.1e-29 134.0 173 57.2
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 1.4e-29 133.7 157 58.0
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 1.4e-29 133.7 157 58.0
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.4e-29 133.7 157 58.0
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 1.4e-29 133.7 173 44.5
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 1.8e-29 133.3 167 48.5
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 4.1e-29 132.1 166 59.0
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 9.1e-29 131.0 162 58.0
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 9.1e-29 131.0 138 70.3
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 1.5e-28 130.2 129 72.1
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 2.6e-28 129.4 331 38.4
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 1.6e-25 120.2 164 52.4
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 1.4e-24 117.1 101 83.2
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.4e-24 117.1 155 71.0
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 5.2e-24 115.2 142 74.6
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 6.7e-24 114.8 101 80.2
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 1.5e-23 113.6 154 55.8
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 1.1e-21 107.5 129 65.1
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 2.4e-21 106.3 152 56.6
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 4.5e-20 102.1 121 64.5
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 1.2e-17 94.0 84 57.1
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 2.1e-17 93.2 111 64.9
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 5.2e-16 88.6 102 72.5
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 9.8e-15 84.3 107 40.2
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 6.5e-11 71.6 81 45.7
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 1.4e-08 63.9 43 67.4
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 3.0e-08 62.8 47 55.3


User provided reference genes

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