Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 8.9e-205 716.8 397 100.0
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 2.0e-140 503.1 398 69.3
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.6e-132 476.1 398 66.8
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 6.1e-121 438.3 368 69.3
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 2.5e-98 363.2 505 47.5
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 2.1e-97 360.1 499 45.3
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 3.6e-97 359.4 446 49.6
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 4.7e-97 359.0 503 46.9
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 4.0e-96 355.9 445 54.4
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 9.8e-95 351.3 441 51.0
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 2.2e-94 350.1 477 46.8
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 2.2e-94 350.1 496 48.2
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 2.9e-94 349.7 487 45.6
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.9e-94 349.7 476 47.5
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 4.9e-94 349.0 484 46.7
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 4.9e-94 349.0 460 48.0
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 6.4e-94 348.6 449 55.2
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 1.4e-93 347.4 475 46.7
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 4.1e-93 345.9 484 45.7
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.2e-92 344.4 475 45.9
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 1.2e-92 344.4 429 48.7
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 7.8e-92 341.7 484 46.3
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 7.8e-92 341.7 450 45.6
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.0e-91 341.3 438 50.0
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 1.3e-91 340.9 476 46.2
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 1.7e-91 340.5 451 49.7
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 2.3e-91 340.1 438 49.8
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 5.0e-91 339.0 438 49.5
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 6.6e-91 338.6 468 46.4
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 8.6e-91 338.2 463 46.9
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 3.3e-90 336.3 510 46.7
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 4.3e-90 335.9 483 44.9
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 7.3e-90 335.1 505 43.8
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 1.6e-89 334.0 455 52.3
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.1e-89 333.6 438 48.2
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.8e-88 330.5 530 41.5
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 6.8e-88 328.6 479 46.1
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 8.9e-88 328.2 478 44.6
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 2.0e-87 327.0 480 44.4
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 3.4e-87 326.2 532 41.0
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 3.7e-86 322.8 483 43.7
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 1.4e-85 320.9 457 45.1
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 3.2e-85 319.7 398 47.2
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 4.1e-85 319.3 493 42.2
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 5.4e-85 318.9 452 44.5
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 7.1e-85 318.5 483 42.9
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 2.7e-84 316.6 417 47.2
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 2.7e-84 316.6 481 42.4
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 3.5e-84 316.2 516 42.6
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 3.5e-84 316.2 516 42.6
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 6.0e-84 315.5 481 43.2
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 6.0e-84 315.5 493 45.4
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 1.0e-83 314.7 497 42.1
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 1.7e-83 313.9 493 43.0
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 1.7e-83 313.9 444 44.4
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 2.3e-83 313.5 482 45.0
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 3.0e-83 313.2 465 43.7
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 3.9e-83 312.8 476 43.1
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 3.9e-83 312.8 505 40.2
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.9e-82 310.5 486 45.7
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 5.6e-82 308.9 474 42.8
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 9.5e-82 308.1 464 42.7
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.2e-81 307.8 484 44.0
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 1.2e-81 307.8 494 44.5
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 3.6e-81 306.2 494 44.7
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 4.7e-81 305.8 467 41.5
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 1.4e-80 304.3 468 43.2
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.8e-80 303.9 466 42.1
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 4.0e-80 302.8 418 44.5
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 5.2e-80 302.4 457 40.9
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 6.8e-80 302.0 478 43.5
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 2.6e-79 300.1 525 40.2
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 4.4e-79 299.3 468 42.5
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 1.3e-78 297.7 470 40.4
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 1.7e-78 297.4 475 40.6
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 3.7e-78 296.2 457 42.2
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 4.9e-78 295.8 476 42.4
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 1.1e-77 294.7 476 42.4
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 1.4e-77 294.3 471 41.2
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 1.9e-77 293.9 430 41.4
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 1.9e-77 293.9 430 41.4
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 3.2e-77 293.1 476 40.3
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 4.1e-77 292.7 472 44.9
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 1.2e-76 291.2 464 40.7
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 2.1e-76 290.4 410 45.6
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 2.1e-76 290.4 465 40.9
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 2.1e-76 290.4 434 43.3
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 2.7e-76 290.0 475 41.3
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 6.0e-76 288.9 475 41.1
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 7.8e-76 288.5 397 45.3
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.0e-75 288.1 390 47.4
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.0e-75 288.1 390 47.4
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 1.0e-75 288.1 412 48.3
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 2.3e-75 287.0 460 39.3
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 2.3e-75 287.0 393 46.8
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 3.0e-75 286.6 398 44.7
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 3.9e-75 286.2 458 41.5
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 6.6e-75 285.4 430 43.7
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 3.6e-73 279.6 462 40.0
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 6.8e-72 275.4 517 35.2
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 8.9e-72 275.0 213 69.5
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 1.5e-71 274.2 517 34.8
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 2.0e-71 273.9 450 41.1
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 2.2e-70 270.4 434 41.5
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 4.9e-70 269.2 396 44.7
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 8.4e-70 268.5 396 42.4
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 1.9e-69 267.3 358 44.7
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 7.8e-68 261.9 460 39.8
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 2.3e-67 260.4 334 47.9
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 6.6e-67 258.8 291 48.5
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 1.3e-65 254.6 473 40.4
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 8.1e-65 251.9 431 39.9
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 4.4e-63 246.1 435 41.1
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.2e-60 238.0 302 47.0
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 2.7e-60 236.9 360 43.3
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 8.7e-59 231.9 435 39.5
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 2.1e-57 227.3 562 33.1
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 6.0e-52 209.1 376 41.2
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.6e-47 193.7 331 39.0
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 1.4e-45 188.0 452 34.7
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 6.7e-43 179.1 384 37.8
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 3.3e-42 176.8 290 39.7
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 3.1e-40 170.2 226 50.0
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 2.2e-38 164.1 213 48.4
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 3.2e-37 160.2 218 44.0
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 1.2e-36 158.3 123 57.7
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 4.6e-36 156.4 389 30.8
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 7.7e-31 139.0 216 43.1
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 3.2e-29 133.7 214 43.5
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 2.5e-26 124.0 117 53.0
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.4e-24 118.2 213 38.0
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 2.0e-23 114.4 219 34.7
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 7.7e-23 112.5 158 42.4
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 2.2e-22 110.9 135 43.0
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 8.5e-22 109.0 347 29.7
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 2.5e-21 107.5 127 43.3
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 2.1e-20 104.4 80 66.2
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 1.8e-19 101.3 179 41.3
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 1.5e-18 98.2 126 41.3
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 2.0e-18 97.8 217 33.2
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 7.4e-18 95.9 78 57.7
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 1.3e-17 95.1 74 54.1
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 4.5e-15 86.7 116 36.2
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 4.2e-13 80.1 139 39.6
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.2e-12 78.6 213 30.0
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.6e-12 78.2 172 32.6
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 2.1e-12 77.8 161 37.3
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 8.0e-12 75.9 400 25.0
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 1.0e-11 75.5 234 26.5
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.0e-11 75.5 86 45.3
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 9.7e-10 68.9 103 44.7
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 1.4e-08 65.1 106 40.6
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 3.1e-08 63.9 59 49.2
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 5.3e-08 63.2 71 45.1
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.7e-06 58.2 66 40.9
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 6.5e-06 56.2 106 36.8


User provided reference genes

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