Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 1.7e-288 995.3 528 100.0
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 3.1e-237 825.1 529 84.3
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 3.5e-225 785.0 583 75.8
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 1.0e-216 756.9 518 77.6
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 3.0e-216 755.4 504 81.2
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 3.0e-216 755.4 450 88.9
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 3.0e-216 755.4 509 78.2
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 1.5e-215 753.1 520 79.6
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 1.5e-215 753.1 505 80.8
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 1.9e-215 752.7 492 81.1
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 3.3e-215 751.9 495 79.4
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 9.7e-215 750.4 471 82.8
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 5.3e-213 744.6 460 84.3
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 4.2e-210 734.9 458 83.8
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 2.1e-209 732.6 508 77.4
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 2.1e-209 732.6 508 76.4
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 4.6e-209 731.5 522 76.8
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 6.1e-209 731.1 508 76.2
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 1.5e-207 726.5 509 75.6
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.9e-207 726.1 519 75.1
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 3.3e-207 725.3 514 74.7
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 5.7e-207 724.5 504 77.2
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 7.4e-207 724.2 511 77.1
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 1.7e-206 723.0 464 81.2
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 4.8e-206 721.5 520 74.8
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 6.3e-206 721.1 519 75.7
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 8.2e-206 720.7 526 74.0
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 8.2e-206 720.7 491 78.0
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.1e-205 720.3 506 76.3
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 1.4e-205 719.9 531 73.6
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 1.8e-205 719.5 460 82.4
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 5.3e-205 718.0 506 76.1
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 1.5e-204 716.5 527 75.1
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 1.5e-204 716.5 471 79.8
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 2.6e-204 715.7 463 81.2
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 2.6e-204 715.7 447 82.8
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 3.4e-204 715.3 458 82.1
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 1.0e-203 713.8 457 82.3
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 1.3e-203 713.4 532 72.7
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 1.7e-203 713.0 455 81.3
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 1.7e-203 713.0 463 80.8
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 3.8e-203 711.8 438 84.5
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 8.5e-203 710.7 461 81.1
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 1.9e-202 709.5 507 75.9
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 3.2e-202 708.8 461 80.5
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 3.2e-202 708.8 461 80.5
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 4.2e-202 708.4 463 80.1
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 4.2e-202 708.4 462 81.4
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 5.5e-202 708.0 454 80.8
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 5.5e-202 708.0 493 77.5
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 1.6e-201 706.4 457 82.3
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 2.7e-201 705.7 483 77.6
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 4.7e-201 704.9 445 82.7
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 4.7e-201 704.9 445 82.7
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 6.1e-201 704.5 457 82.1
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 6.1e-201 704.5 469 78.7
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 6.1e-201 704.5 457 80.3
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 2.3e-200 702.6 439 83.4
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 8.8e-200 700.7 435 83.7
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 8.8e-200 700.7 437 81.9
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 1.1e-199 700.3 463 79.3
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 1.1e-199 700.3 495 76.4
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 1.5e-199 699.9 508 75.2
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 2.6e-199 699.1 488 76.2
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 1.7e-198 696.4 478 75.5
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 3.7e-198 695.3 459 79.5
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 6.3e-198 694.5 495 74.7
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 8.2e-198 694.1 462 78.6
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 4.1e-197 691.8 430 83.5
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 9.1e-197 690.6 449 81.1
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 9.1e-197 690.6 449 81.1
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 9.1e-197 690.6 462 77.9
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 1.2e-196 690.3 512 74.2
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 1.5e-196 689.9 421 84.6
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 2.0e-196 689.5 492 74.2
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 3.4e-196 688.7 449 81.1
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 7.7e-196 687.6 531 70.6
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 1.0e-195 687.2 435 82.8
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 1.3e-195 686.8 460 79.8
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 1.1e-194 683.7 449 80.2
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 3.2e-194 682.2 531 69.3
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 4.2e-194 681.8 486 72.0
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 5.5e-194 681.4 467 74.9
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 1.2e-193 680.2 413 84.7
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 4.7e-193 678.3 406 85.2
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 8.0e-193 677.6 464 77.4
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 1.0e-192 677.2 492 72.8
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 1.8e-192 676.4 494 73.7
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 2.8e-190 669.1 415 84.1
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 3.7e-190 668.7 495 71.5
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 4.8e-190 668.3 464 74.6
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 2.6e-188 662.5 457 76.1
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 7.7e-188 661.0 459 75.2
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 1.0e-187 660.6 434 80.6
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 1.3e-187 660.2 436 79.1
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 2.2e-187 659.4 429 80.7
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 5.5e-186 654.8 457 75.7
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 4.7e-185 651.7 404 82.2
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 8.8e-184 647.5 468 71.6
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 7.5e-183 644.4 460 74.1
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 1.3e-182 643.7 432 78.5
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 1.7e-182 643.3 490 70.8
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 2.2e-179 632.9 518 66.2
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 4.2e-178 628.6 450 74.0
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 5.5e-178 628.2 503 70.4
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 5.5e-178 628.2 452 72.8
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 8.0e-177 624.4 462 72.3
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 4.4e-175 618.6 514 66.5
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 2.8e-174 615.9 468 71.6
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 7.7e-172 607.8 455 70.5
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 1.8e-168 596.7 444 71.6
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 2.0e-167 593.2 421 76.5
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 1.4e-165 587.0 512 63.7
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 8.0e-153 544.7 434 66.1
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 8.0e-153 544.7 434 66.1
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 5.2e-144 515.4 417 62.8
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 4.3e-138 495.7 379 69.7
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 3.6e-137 492.7 376 72.3
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 8.1e-137 491.5 440 60.0
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 1.2e-135 487.6 438 59.4
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 3.9e-131 472.6 372 68.0
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 3.1e-120 436.4 367 61.9
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 5.5e-109 399.1 230 90.4
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 3.0e-99 366.7 449 46.5
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 5.7e-98 362.5 274 69.7
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 1.8e-91 340.9 422 49.3
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 3.3e-90 336.7 367 54.5
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 6.7e-75 285.8 452 38.9
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 3.7e-73 280.0 169 88.2
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 6.3e-73 279.3 385 40.3
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 3.8e-70 270.0 156 92.9
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 7.0e-64 249.2 385 35.3
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 1.2e-63 248.4 312 49.0
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 9.8e-58 228.8 376 36.2
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 7.0e-56 222.6 273 49.5
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 1.7e-54 218.0 456 34.6
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 6.6e-54 216.1 162 69.8
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 6.4e-41 172.9 144 70.1
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 9.2e-40 169.1 126 63.5
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 6.0e-31 139.8 121 66.1
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.6e-28 131.7 86 77.9
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 5.8e-26 123.2 105 62.9
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 2.4e-24 117.9 98 69.4
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 2.5e-21 107.8 386 25.9
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 2.5e-21 107.8 116 56.0
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 8.1e-12 76.3 221 27.6
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 1.4e-11 75.5 447 23.5
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 6.9e-11 73.2 67 64.2


User provided reference genes

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