Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G100200 Carya illinoinensis HOM05D006140 ORTHO05D007834 0.0e+00 1335.9 686 100.0
Cfa012537 Carpinus fangiana HOM05D006140 ORTHO05D007834 4.4e-228 795.0 707 63.8
QL12p000198 Quercus lobata HOM05D006140 ORTHO05D007834 6.4e-227 791.2 757 61.0
Prupe.5G025700 Prunus persica HOM05D006140 ORTHO05D007834 2.3e-168 596.7 730 50.3
Dinv06909 Davidia involucrata HOM05D006140 ORTHO05D007834 5.7e-167 592.0 733 50.2
TWI60G0968 Tripterygium wilfordii HOM05D006140 ORTHO05D007834 2.9e-163 579.7 741 49.4
Actinidia14773 Actinidia chinensis HOM05D006140 ORTHO05D007834 2.5e-162 576.6 725 48.8
TAR629G0094 Trochodendron aralioides HOM05D006140 ORTHO05D007834 3.2e-162 576.2 739 49.4
Gohir.A12G205000 Gossypium hirsutum HOM05D006140 ORTHO05D007834 2.8e-153 546.6 721 46.7
Potri.003G098700 Populus trichocarpa HOM05D006140 ORTHO05D007834 3.6e-153 546.2 727 47.9
Potri.001G134800 Populus trichocarpa HOM05D006140 ORTHO05D007834 4.0e-152 542.7 727 49.0
Manes.17G016001 Manihot esculenta HOM05D006140 ORTHO05D007834 2.2e-150 537.0 714 46.1
Gorai.008G222800 Gossypium raimondii HOM05D006140 ORTHO05D007834 9.2e-149 531.6 718 46.0
Gohir.D12G207400 Gossypium hirsutum HOM05D006140 ORTHO05D007834 5.9e-148 528.9 718 46.0
MD06G1024600 Malus domestica HOM05D006140 ORTHO05D007834 5.6e-146 522.3 623 50.6
RcHm_v2.0_Chr7g0212401 Rosa chinensis HOM05D006140 ORTHO05D007834 2.9e-142 510.0 734 45.0
Atru.chr6.1557 Acer truncatum HOM05D006140 ORTHO05D007834 3.7e-142 509.6 770 43.6
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 9.2e-141 505.0 734 45.5
ClCG09G011510 Citrullus lanatus HOM05D006140 ORTHO05D007834 1.2e-140 504.6 729 42.9
Duzib205G1045 Durio zibethinus HOM05D006140 ORTHO05D007834 3.0e-139 500.0 722 45.6
FAN18G2089 Fragaria x ananassa HOM05D006140 ORTHO05D007834 3.3e-138 496.5 716 44.0
Lalb_Chr09g0325351 Lupinus albus HOM05D006140 ORTHO05D007834 5.6e-138 495.7 656 45.9
CsaV3_3G048750 Cucumis sativus L. HOM05D006140 ORTHO05D007834 9.5e-138 495.0 736 42.7
FAN18G2328 Fragaria x ananassa HOM05D006140 ORTHO05D007834 4.7e-137 492.7 717 44.1
FvH4_5g23380 Fragaria vesca HOM05D006140 ORTHO05D007834 4.0e-136 489.6 708 43.9
CANSAT21G0745 Cannabis sativa HOM05D006140 ORTHO05D007834 5.2e-136 489.2 674 47.6
Sed0012782 Sechium edule HOM05D006140 ORTHO05D007834 6.8e-136 488.8 734 43.1
Nn1g01908 Nelumbo nucifera HOM05D006140 ORTHO05D007834 1.2e-135 488.0 735 42.4
Glyma.01G010800 Glycine max HOM05D006140 ORTHO05D007834 3.4e-135 486.5 696 44.7
Glyma.09G210300 Glycine max HOM05D006140 ORTHO05D007834 1.1e-133 481.5 711 42.8
VMungo1215G1486 Vigna mungo HOM05D006140 ORTHO05D007834 2.3e-131 473.8 714 42.7
Phvul.002G133700 Phaseolus vulgaris HOM05D006140 ORTHO05D007834 2.5e-130 470.3 719 41.9
Thecc.03G312700 Theobroma cacao HOM05D006140 ORTHO05D007834 2.1e-129 467.2 714 42.6
FAN08G2467 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.1e-128 464.9 714 43.3
vmacro14212 Vaccinium macrocarpon HOM05D006140 ORTHO05D007834 8.9e-128 461.8 923 37.4
Sc22g0001920 Simmondsia chinensis HOM05D006140 ORTHO05D007834 3.7e-126 456.4 717 40.6
arahy.Tifrunner.gnm1.ann1.B53Y8P Arachis hypogaea HOM05D006140 ORTHO05D007834 4.1e-125 453.0 747 41.4
arahy.Tifrunner.gnm1.ann1.HKBA6R Arachis hypogaea HOM05D006140 ORTHO05D007834 4.1e-125 453.0 747 41.4
PGR042G2343 Punica granatum HOM05D006140 ORTHO05D007834 6.6e-123 445.7 761 41.8
Sabra01G0104200 Salix brachista HOM05D006140 ORTHO05D007834 3.1e-120 436.8 583 48.9
DCAR_008203 Daucus carota HOM05D006140 ORTHO05D007834 1.2e-119 434.9 720 41.4
Lj2g0005195 Lotus japonicus HOM05D006140 ORTHO05D007834 5.8e-119 432.6 704 40.3
TPR.G19464 Trifolium pratense HOM05D006140 ORTHO05D007834 3.8e-118 429.9 657 41.7
Rhsim07G0134400 Rhododendron simsii HOM05D006140 ORTHO05D007834 1.1e-117 428.3 883 37.3
Sopen08g024830 Solanum pennellii HOM05D006140 ORTHO05D007834 1.9e-117 427.6 735 40.0
Psat2g140200 Pisum sativum HOM05D006140 ORTHO05D007834 3.2e-117 426.8 729 38.8
Ca_25157_v3 Cicer arietinum L. HOM05D006140 ORTHO05D007834 1.4e-112 411.4 708 38.8
Medtr5g027920 Medicago truncatula HOM05D006140 ORTHO05D007834 1.4e-112 411.4 708 39.0
Migut.A00588 Erythranthe guttata HOM05D006140 ORTHO05D007834 4.4e-111 406.4 732 39.5
HanXRQChr15g0469721 Helianthus annuus HOM05D006140 ORTHO05D007834 5.8e-111 406.0 690 41.4
ECA233G4025 Erigeron canadensis HOM05D006140 ORTHO05D007834 2.2e-110 404.1 630 41.1
THA.LOC104798454 Tarenaya hassleriana HOM05D006140 ORTHO05D007834 1.9e-109 401.0 724 40.3
Solyc08g076190.3 Solanum lycopersicum HOM05D006140 ORTHO05D007834 2.4e-109 400.6 739 38.3
FAN04G1734 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.6e-108 397.9 707 39.0
BcaC06g31534 Brassica carinata HOM05D006140 ORTHO05D007834 2.1e-108 397.5 716 38.5
SGA_v2.0_scaffold89G27431 Striga asiatica HOM05D006140 ORTHO05D007834 3.0e-107 393.7 737 38.3
Aqoxy3G02157 Aquilegia oxysepala HOM05D006140 ORTHO05D007834 5.1e-107 392.9 523 44.9
Aa31LG9G7440 Aethionema arabicum HOM05D006140 ORTHO05D007834 6.6e-107 392.5 726 39.0
MELO3C030376.2 Cucumis melo HOM05D006140 ORTHO05D007834 8.7e-107 392.1 817 36.4
Lsat_1_v5_gn_6_17700 Lactuca sativa HOM05D006140 ORTHO05D007834 4.8e-105 386.3 643 41.8
Sp2g10500 Schrenkiella parvula HOM05D006140 ORTHO05D007834 1.1e-104 385.2 735 38.1
BraA06t27522Z Brassica rapa HOM05D006140 ORTHO05D007834 9.0e-104 382.1 727 38.4
BcaC06g34418 Brassica carinata HOM05D006140 ORTHO05D007834 7.6e-103 379.0 715 38.2
C07p28720 Brassica napus HOM05D006140 ORTHO05D007834 7.6e-103 379.0 715 38.2
BolC7t43410H Brassica oleracea HOM05D006140 ORTHO05D007834 7.6e-103 379.0 715 38.2
A06p46490 Brassica napus HOM05D006140 ORTHO05D007834 1.3e-102 378.3 732 38.4
AUR62027322 Chenopodium quinoa HOM05D006140 ORTHO05D007834 2.4e-101 374.0 651 38.4
PSO063G5188 Papaver somniferum HOM05D006140 ORTHO05D007834 7.9e-100 369.0 796 34.5
PSO782G1224 Papaver somniferum HOM05D006140 ORTHO05D007834 5.1e-99 366.3 803 33.6
Nitab4.5_0000543g0200 Nicotiana tabacum HOM05D006140 ORTHO05D007834 7.4e-98 362.5 763 36.2
Peaxi162Scf00879g00021 Petunia axillaris HOM05D006140 ORTHO05D007834 3.7e-97 360.1 726 36.9
EL10Ac5g11927 Beta vulgaris HOM05D006140 ORTHO05D007834 4.8e-97 359.8 704 38.2
GSVIVG01012994001 Vitis vinifera HOM05D006140 ORTHO05D007834 1.1e-93 348.6 344 59.0
Hund11103 Selenicereus undatus HOM05D006140 ORTHO05D007834 1.9e-93 347.8 692 38.3
AUR62007410 Chenopodium quinoa HOM05D006140 ORTHO05D007834 2.7e-92 344.0 598 38.6
SalBow1G1748 Salvia bowleyana HOM05D006140 ORTHO05D007834 2.7e-92 344.0 709 37.1
Thhalv10000816m.g Eutrema salsugineum HOM05D006140 ORTHO05D007834 6.7e-91 339.3 725 34.9
CARHR176410 Cardamine hirsuta HOM05D006140 ORTHO05D007834 1.9e-90 337.8 488 42.4
AL8G13070 Arabidopsis lyrata HOM05D006140 ORTHO05D007834 3.3e-90 337.0 614 36.6
AT5G45610 Arabidopsis thaliana HOM05D006140 ORTHO05D007834 3.3e-90 337.0 606 37.1
Ciclev10003207m.g Citrus clementina HOM05D006140 ORTHO05D007834 3.2e-85 320.5 353 51.8
Nitab4.5_0003023g0010 Nicotiana tabacum HOM05D006140 ORTHO05D007834 7.9e-84 315.8 765 33.9
Carub.0008s0241 Capsella rubella HOM05D006140 ORTHO05D007834 6.3e-81 306.2 676 35.8
ATR0829G104 Amborella trichopoda HOM05D006140 ORTHO05D007834 1.0e-78 298.9 518 38.2
HPP92_020808 Vanilla planifolia HOM05D006140 ORTHO05D007834 5.0e-70 270.0 644 30.7
Ah.12g055990 Amaranthus hybridus HOM05D006140 ORTHO05D007834 8.5e-70 269.2 650 34.6
PGSC0003DMG401009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 5.1e-67 260.0 275 51.6
Eucgr.E01307 Eucalyptus grandis HOM05D006140 ORTHO05D007834 2.0e-63 248.1 415 41.7
Cc00_g09430 Coffea canephora HOM05D006140 ORTHO05D007834 4.5e-63 246.9 276 50.4
Haze_08125 Corylus avellana HOM05D006140 ORTHO05D007834 9.1e-56 222.6 160 77.5
Lj3g0005794 Lotus japonicus HOM05D006140 ORTHO05D007834 2.6e-55 221.1 227 51.5
Zm00001eb208860 Zea mays HOM05D006140 ORTHO05D007834 5.0e-54 216.9 511 32.9
MBI04_g36019_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 4.5e-47 193.7 441 34.9
SEGI_17370 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 2.2e-41 174.9 715 26.3
COL.COLO4_16905 Corchorus olitorius HOM05D006140 ORTHO05D007834 6.3e-41 173.3 346 37.0
unitig_32.g10971 Utricularia gibba HOM05D006140 ORTHO05D007834 8.3e-41 172.9 498 30.5
Actinidia24581 Actinidia chinensis HOM05D006140 ORTHO05D007834 3.1e-40 171.0 260 42.3
Cc00_g09420 Coffea canephora HOM05D006140 ORTHO05D007834 3.5e-39 167.5 382 35.6
Lj6g0014120 Lotus japonicus HOM05D006140 ORTHO05D007834 1.2e-36 159.1 548 28.3
Ciclev10003621m.g Citrus clementina HOM05D006140 ORTHO05D007834 1.8e-32 145.2 297 36.7
Hma1.2p1_1460F.1_g284980 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 5.6e-29 133.7 150 57.3
PGSC0003DMG402009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 2.1e-28 131.7 350 31.7
CDE02G1222 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 2.9e-25 121.3 154 48.7
MBI04_g20983_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 1.9e-24 118.6 136 52.9
SHI20257 Sapria himalayana HOM05D006140 ORTHO05D007834 5.0e-22 110.5 164 45.7
SHI20259 Sapria himalayana HOM05D006140 ORTHO05D007834 3.3e-21 107.8 257 33.1
Pp3c4_25200 Physcomitrium patens HOM05D006140 ORTHO05D007834 5.6e-21 107.1 430 25.1
CDE02G0505 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 1.2e-20 105.9 299 26.8
Cpa.g.sc16.12 Carica papaya HOM05D006140 ORTHO05D007834 7.5e-18 96.7 126 46.8
Hma1.2p1_1460F.1_g284990 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 1.2e-15 89.4 173 37.6
Hma1.2p1_1819F.1_g304030 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 3.9e-14 84.3 90 50.0
Mapoly0016s0037 Marchantia polymorpha HOM05D006140 ORTHO05D007834 6.6e-14 83.6 380 22.4
TAR629G2830 Trochodendron aralioides HOM05D006140 ORTHO05D007834 6.8e-11 73.6 192 30.7
SEGI_32981 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 3.7e-09 67.8 257 26.1
Oeu063929.1 Olea europaea HOM05D006140 ORTHO05D007834 8.3e-09 66.6 55 63.6
AagrBONN_evm.TU.Sc2ySwM_344.4141 Anthoceros agrestis HOM05D006140 ORTHO05D007834 4.1e-08 64.3 169 29.0
unitig_32.g10972 Utricularia gibba HOM05D006140 ORTHO05D007834 4.1e-08 64.3 135 34.8
SMO367G0412 Selaginella moellendorffii HOM05D006140 ORTHO05D007834 9.2e-08 63.2 409 21.0
Medtr5g019630 Medicago truncatula HOM05D006140 ORTHO05D007834 2.7e-07 61.6 146 37.0
CBR_g24386 Chara braunii HOM05D006140 ORTHO05D007834 1.0e-06 59.7 136 32.4


User provided reference genes

Program Settings