Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 5.1e-142 507.7 245 100.0
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 5.1e-110 401.4 242 81.4
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.9e-93 346.3 238 68.1
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 4.3e-93 345.1 240 67.9
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 1.6e-92 343.2 241 68.5
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 1.6e-92 343.2 243 67.9
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 3.7e-92 342.0 241 66.8
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 6.3e-92 341.3 243 67.5
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 6.9e-91 337.8 242 66.1
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.6e-90 335.9 242 66.1
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.4e-90 335.5 242 66.1
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 1.1e-88 330.5 243 65.8
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.9e-88 329.7 242 65.3
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 5.5e-88 328.2 250 64.0
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.2e-87 327.0 242 64.5
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 1.6e-87 326.6 245 66.1
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 2.1e-87 326.2 247 66.4
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 4.6e-87 325.1 237 66.2
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 3.9e-86 322.0 234 68.4
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.9e-86 322.0 234 68.4
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 5.1e-86 321.6 236 64.0
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 5.1e-86 321.6 226 70.8
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 1.5e-85 320.1 183 82.0
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 2.0e-85 319.7 237 66.2
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.6e-85 319.3 242 65.7
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.6e-85 319.3 234 68.4
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 2.6e-85 319.3 181 82.3
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 3.3e-85 318.9 234 67.1
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 4.4e-85 318.5 247 64.8
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 4.4e-85 318.5 245 63.7
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 3.7e-84 315.5 244 63.5
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 3.7e-84 315.5 221 69.7
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.4e-83 313.5 239 64.4
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.4e-83 313.5 237 64.6
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 3.1e-83 312.4 237 63.7
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 3.1e-83 312.4 246 62.6
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 9.1e-83 310.8 182 76.4
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 1.2e-82 310.5 253 62.8
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.5e-82 310.1 239 64.9
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 3.4e-82 308.9 234 65.4
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.0e-81 307.4 243 63.4
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 1.3e-81 307.0 176 79.5
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 1.3e-81 307.0 185 75.7
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.3e-81 307.0 226 63.3
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 1.7e-81 306.6 180 77.8
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 1.7e-81 306.6 226 66.4
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 1.7e-81 306.6 246 62.2
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 2.9e-81 305.8 219 68.5
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 3.8e-81 305.4 235 64.7
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 3.8e-81 305.4 177 79.7
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 5.0e-81 305.1 181 77.3
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 5.0e-81 305.1 235 64.3
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 6.5e-81 304.7 239 61.9
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 1.1e-80 303.9 186 75.8
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 1.1e-80 303.9 245 60.8
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 1.1e-80 303.9 241 61.8
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 1.4e-80 303.5 190 74.2
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 1.4e-80 303.5 230 64.3
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 1.9e-80 303.1 241 61.8
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 2.5e-80 302.8 204 71.1
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 2.5e-80 302.8 229 65.1
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 2.5e-80 302.8 223 63.7
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 3.2e-80 302.4 190 74.7
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 3.2e-80 302.4 181 76.2
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 3.2e-80 302.4 235 62.1
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 5.5e-80 301.6 184 73.4
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 9.4e-80 300.8 182 73.6
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 9.4e-80 300.8 223 64.6
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 1.6e-79 300.1 198 71.2
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 3.6e-79 298.9 227 61.7
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 3.6e-79 298.9 241 62.7
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 4.7e-79 298.5 178 74.7
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 6.1e-79 298.1 251 60.6
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 6.1e-79 298.1 237 59.1
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 6.1e-79 298.1 221 64.7
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 1.0e-78 297.4 190 73.7
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 1.4e-78 297.0 218 65.6
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 1.8e-78 296.6 178 74.7
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.3e-78 296.2 245 60.8
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 2.3e-78 296.2 204 70.6
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 3.9e-78 295.4 180 76.1
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 3.9e-78 295.4 180 76.1
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 3.9e-78 295.4 223 63.7
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 5.2e-78 295.0 216 66.7
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 1.1e-77 293.9 247 59.9
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 1.5e-77 293.5 189 72.5
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 1.5e-77 293.5 189 72.5
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 2.0e-77 293.1 181 74.6
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 2.0e-77 293.1 235 61.3
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 2.6e-77 292.7 188 73.9
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 3.3e-77 292.4 201 69.2
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 3.3e-77 292.4 201 69.2
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 4.4e-77 292.0 240 59.6
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 4.4e-77 292.0 223 62.8
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 4.4e-77 292.0 223 62.8
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 4.4e-77 292.0 200 68.5
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 1.3e-76 290.4 216 67.6
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 1.7e-76 290.0 222 61.7
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 1.7e-76 290.0 222 61.7
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 2.2e-76 289.7 175 74.3
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 2.8e-76 289.3 179 73.7
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 2.4e-75 286.2 175 72.6
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 2.4e-75 286.2 178 72.5
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 4.1e-75 285.4 217 61.8
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 4.1e-75 285.4 217 64.1
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 5.3e-75 285.0 231 61.5
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 5.3e-75 285.0 175 73.1
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 7.0e-75 284.6 242 59.9
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 2.6e-74 282.7 231 59.7
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 7.7e-74 281.2 226 60.2
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 7.7e-74 281.2 175 74.3
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 1.0e-73 280.8 235 56.6
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 6.5e-73 278.1 178 70.8
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 7.2e-72 274.6 169 72.2
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 7.2e-72 274.6 236 57.6
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 7.2e-72 274.6 234 59.4
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 2.1e-71 273.1 174 69.0
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 2.1e-71 273.1 171 70.8
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 4.7e-71 271.9 243 55.1
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 6.1e-71 271.6 242 55.8
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 4.0e-70 268.9 181 69.1
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 8.8e-70 267.7 227 59.9
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.8e-68 262.7 147 81.6
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 1.2e-66 257.3 144 79.9
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 7.7e-66 254.6 243 53.9
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 1.0e-65 254.2 148 79.1
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 5.5e-64 248.4 197 62.4
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 2.3e-62 243.0 202 61.4
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 1.5e-61 240.4 141 75.9
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 3.4e-61 239.2 137 77.4
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 4.1e-59 232.3 235 53.6
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.5e-58 229.2 186 61.3
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 7.7e-58 228.0 245 51.4
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 3.8e-57 225.7 164 63.4
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 1.5e-56 223.8 167 61.7
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.8e-55 219.5 149 70.5
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 5.7e-53 211.8 165 59.4
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.3e-52 210.7 149 65.1
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 4.1e-51 205.7 170 57.1
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 5.4e-51 205.3 211 48.3
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 2.7e-50 203.0 111 82.9
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 4.5e-50 202.2 166 54.8
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 1.3e-49 200.7 239 46.0
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 3.7e-44 182.6 234 44.0
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 7.0e-35 151.8 143 53.8
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 1.6e-34 150.6 91 73.6
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.0e-33 147.9 147 52.4
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 3.6e-31 139.4 84 76.2
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 5.2e-30 135.6 93 66.7
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 1.5e-29 134.0 279 31.2
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 4.9e-28 129.0 104 59.6
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.6e-26 124.0 82 65.9
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 2.3e-25 120.2 63 85.7
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.5e-24 116.7 71 76.1
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 8.9e-22 108.2 77 67.5
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 2.0e-21 107.1 141 36.9
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 2.7e-18 96.7 62 71.0
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.0e-17 94.7 68 61.8
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 6.9e-14 82.0 81 48.1
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.2e-13 81.3 39 87.2
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.4e-13 79.7 51 68.6
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 7.6e-13 78.6 46 73.9
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 1.1e-11 74.7 91 47.3
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 7.1e-11 72.0 52 61.5
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 9.3e-11 71.6 51 62.7
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 7.3e-08 62.0 43 62.8
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 3.6e-07 59.7 35 68.6
CDE07G0992 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 2.4e-06 57.0 36 63.9


User provided reference genes

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