Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 6.2e-191 670.6 336 100.0
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 2.0e-125 453.0 320 73.4
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 4.5e-125 451.8 322 73.9
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 2.0e-96 356.7 322 56.8
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 1.3e-92 344.0 303 57.8
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 1.6e-90 337.0 237 72.2
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 2.8e-90 336.3 304 58.2
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.8e-90 336.3 304 58.2
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 6.2e-90 335.1 311 58.2
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.4e-89 334.0 304 57.9
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 1.4e-89 334.0 308 56.2
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.3e-89 333.2 304 57.9
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.3e-89 333.2 304 57.9
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.2e-88 330.9 304 57.6
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 7.5e-88 328.2 321 57.6
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.3e-87 327.4 308 56.8
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 3.7e-87 325.9 321 55.8
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 4.6e-85 318.9 308 54.5
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 4.7e-82 308.9 322 53.7
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 8.1e-82 308.1 305 55.7
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 8.1e-82 308.1 314 55.4
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 1.2e-80 304.3 281 55.5
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 1.2e-80 304.3 315 52.7
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 1.5e-80 303.9 321 52.0
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 5.8e-80 302.0 313 52.7
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.4e-78 297.4 305 55.1
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 1.9e-78 297.0 296 55.4
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 2.4e-78 296.6 302 53.6
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 2.7e-77 293.1 302 52.3
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 4.6e-77 292.4 316 50.3
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 2.3e-76 290.0 322 51.2
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 1.9e-75 287.0 317 52.4
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.3e-75 286.2 260 58.1
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 1.2e-74 284.3 321 50.5
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 1.6e-74 283.9 316 50.3
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 4.7e-74 282.3 285 50.9
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 2.4e-73 280.0 310 51.0
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 4.0e-73 279.3 310 51.0
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 5.2e-73 278.9 264 54.5
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 6.8e-73 278.5 310 50.6
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 1.3e-71 274.2 260 54.2
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 2.2e-71 273.5 253 54.9
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 2.2e-71 273.5 379 45.6
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 5.4e-70 268.9 275 53.1
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 9.2e-70 268.1 301 49.2
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 6.0e-69 265.4 237 56.1
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 1.7e-68 263.8 261 53.3
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 3.9e-68 262.7 344 45.1
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 1.9e-67 260.4 218 58.3
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 3.3e-67 259.6 308 47.1
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 3.3e-67 259.6 259 52.1
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 3.3e-67 259.6 264 51.5
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 3.3e-67 259.6 261 52.1
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 7.3e-67 258.5 259 49.8
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 1.6e-66 257.3 305 49.2
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 1.6e-66 257.3 263 50.2
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 2.1e-66 256.9 261 51.0
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 2.1e-66 256.9 261 51.0
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 2.1e-66 256.9 261 51.0
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 2.1e-66 256.9 263 49.4
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 2.8e-66 256.5 314 46.8
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 4.8e-66 255.8 325 47.1
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 4.8e-66 255.8 263 49.4
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 4.8e-66 255.8 261 52.1
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 8.1e-66 255.0 253 53.8
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.1e-65 254.6 325 47.1
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 1.1e-65 254.6 325 47.1
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 4.0e-65 252.7 314 46.5
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 1.5e-64 250.8 279 46.6
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.0e-64 250.4 250 52.0
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 3.4e-64 249.6 317 46.1
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 9.9e-64 248.1 289 47.4
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 9.9e-64 248.1 264 51.1
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 2.2e-63 246.9 262 48.1
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 3.8e-63 246.1 284 47.2
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 3.8e-63 246.1 247 51.8
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.4e-62 243.4 286 48.3
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 6.0e-61 238.8 260 48.5
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 3.0e-60 236.5 301 43.9
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 3.9e-60 236.1 264 50.4
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 6.6e-60 235.3 311 46.0
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.5e-59 234.2 260 48.8
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 1.3e-58 231.1 251 47.8
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 3.6e-58 229.6 266 47.7
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.8e-58 229.2 265 46.4
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 6.2e-58 228.8 278 45.3
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 8.1e-58 228.4 297 47.1
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.8e-57 227.3 252 48.0
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.4e-57 226.9 252 48.0
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.4e-57 226.9 252 48.0
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 4.0e-57 226.1 281 46.3
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.0e-57 226.1 252 47.6
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.0e-57 226.1 252 47.6
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.0e-57 226.1 252 47.6
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.3e-57 225.7 265 46.4
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.0e-57 224.9 252 47.6
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.5e-56 224.2 252 47.6
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 4.5e-56 222.6 220 56.8
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.2e-55 220.3 252 47.2
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 4.2e-54 216.1 283 45.6
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 1.6e-53 214.2 320 42.2
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.1e-53 213.8 229 49.8
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 1.8e-52 210.7 177 57.1
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 1.5e-51 207.6 309 44.0
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 1.9e-51 207.2 237 49.8
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 7.4e-51 205.3 310 42.6
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 9.6e-51 204.9 292 42.5
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 1.1e-49 201.4 295 43.1
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 3.1e-49 199.9 247 45.3
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 4.0e-49 199.5 295 43.4
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 9.0e-49 198.4 306 42.2
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.0e-47 194.9 215 52.1
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 2.9e-47 193.4 309 40.5
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 4.9e-47 192.6 242 46.3
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 2.5e-46 190.3 288 40.6
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 2.5e-46 190.3 288 40.6
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 5.5e-46 189.1 288 40.3
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 9.3e-46 188.3 304 38.5
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 9.3e-46 188.3 304 38.2
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 1.5e-43 181.0 268 42.2
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 2.5e-43 180.3 295 38.3
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 2.1e-42 177.2 293 38.2
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.0e-41 171.8 218 44.5
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 2.0e-40 170.6 262 40.1
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 4.5e-40 169.5 269 40.9
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 7.6e-40 168.7 225 41.3
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.5e-39 165.6 171 49.7
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.5e-39 165.6 171 49.7
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.4e-38 164.5 181 47.5
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 2.5e-38 163.7 230 42.2
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 7.1e-38 162.2 295 39.3
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.8e-36 157.5 127 62.2
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 9.7e-35 151.8 279 35.8
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 5.0e-31 139.4 141 51.8
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.5e-31 139.0 146 48.6
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 1.5e-27 127.9 243 37.0
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.0e-27 127.5 136 47.8
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 1.2e-24 118.2 206 35.4
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 5.5e-22 109.4 207 34.8
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 5.7e-19 99.4 101 51.5
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 2.2e-18 97.4 204 30.9
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 2.2e-15 87.4 86 51.2
SalBow6G7173 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.0e-11 74.3 83 48.2
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 4.4e-11 73.2 166 34.9
SalBow6G0459 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.1e-09 67.0 75 45.3
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 1.0e-07 62.0 61 45.9


User provided reference genes

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