Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 6.1e-263 910.2 441 100.0
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 2.5e-248 861.7 441 93.9
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 2.7e-247 858.2 456 91.2
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 1.6e-239 832.4 435 89.7
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 3.0e-238 828.2 436 89.9
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 2.6e-237 825.1 436 89.9
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 5.7e-237 823.9 436 88.5
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 2.2e-236 822.0 437 88.8
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 4.1e-235 817.8 437 87.6
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 9.2e-235 816.6 436 86.9
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 1.2e-234 816.2 437 87.9
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 3.5e-234 814.7 434 87.6
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 4.5e-234 814.3 434 87.8
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.7e-233 812.4 437 87.9
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 3.8e-233 811.2 436 87.2
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 6.6e-233 810.4 433 88.2
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 6.6e-233 810.4 437 87.6
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 6.6e-233 810.4 440 87.3
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.5e-232 809.3 436 88.1
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.9e-232 808.9 433 87.8
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 3.3e-232 808.1 437 87.0
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 3.3e-232 808.1 432 88.4
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 3.3e-232 808.1 434 86.9
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 4.3e-232 807.7 435 86.9
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 4.3e-232 807.7 434 87.3
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 5.6e-232 807.4 437 87.2
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 9.5e-232 806.6 435 86.7
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 9.5e-232 806.6 436 87.2
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 1.6e-231 805.8 437 86.0
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 1.6e-231 805.8 433 87.8
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.8e-231 805.1 432 87.7
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.8e-231 805.1 432 87.7
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 4.7e-231 804.3 433 87.5
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 6.1e-231 803.9 432 87.3
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.0e-230 803.1 432 86.8
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 1.8e-230 802.4 438 87.9
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 2.3e-230 802.0 437 86.7
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 4.0e-230 801.2 435 86.9
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 6.8e-230 800.4 438 86.5
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 6.8e-230 800.4 435 86.0
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 2.6e-229 798.5 435 85.1
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 2.6e-229 798.5 435 85.5
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 4.4e-229 797.7 433 87.1
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 2.2e-228 795.4 437 84.2
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 8.3e-228 793.5 436 84.2
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 1.4e-227 792.7 436 85.3
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 6.0e-226 787.3 493 77.3
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 3.0e-225 785.0 435 84.1
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 5.0e-225 784.3 437 84.0
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 5.0e-225 784.3 437 83.5
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 1.9e-224 782.3 472 79.2
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 2.5e-224 781.9 437 83.1
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 4.3e-224 781.2 432 86.1
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 7.3e-224 780.4 437 82.4
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 3.6e-223 778.1 437 82.4
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 3.1e-222 775.0 431 84.2
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 8.9e-222 773.5 438 83.8
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 2.0e-221 772.3 427 85.2
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 2.6e-221 771.9 436 83.5
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 2.6e-221 771.9 436 83.5
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 4.4e-221 771.2 436 83.5
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 9.8e-221 770.0 437 81.9
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 9.8e-221 770.0 436 83.3
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 1.7e-220 769.2 435 83.4
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 6.4e-220 767.3 435 81.1
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 8.3e-220 766.9 438 81.7
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 8.3e-220 766.9 439 82.7
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.1e-219 766.5 445 81.6
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 4.1e-219 764.6 435 82.3
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 7.0e-219 763.8 438 82.0
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 7.0e-219 763.8 429 83.2
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 7.0e-219 763.8 435 82.5
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 9.2e-219 763.5 438 81.7
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 1.2e-218 763.1 435 82.3
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.2e-218 763.1 435 81.4
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 2.1e-218 762.3 438 82.4
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 2.7e-218 761.9 429 83.4
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 2.3e-217 758.8 436 81.0
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 1.1e-216 756.5 508 72.4
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 1.5e-216 756.1 436 81.7
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 2.5e-216 755.4 440 80.5
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 2.8e-215 751.9 444 80.6
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 6.2e-215 750.7 409 87.3
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 1.1e-211 740.0 523 70.6
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 7.1e-211 737.3 413 84.0
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 2.1e-210 735.7 432 78.9
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 1.7e-209 732.6 420 83.1
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 3.9e-209 731.5 402 85.6
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 6.8e-206 720.7 437 76.7
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 6.8e-206 720.7 434 77.2
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 1.5e-205 719.5 392 86.5
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 5.8e-205 717.6 434 77.9
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 2.1e-199 699.1 405 80.5
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.8e-198 696.0 426 77.7
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 1.8e-198 696.0 435 74.9
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 9.0e-198 693.7 437 75.7
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 1.9e-195 686.0 440 73.2
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 4.2e-195 684.9 433 74.4
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 1.6e-194 682.9 443 72.0
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 9.6e-192 673.7 426 74.6
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 1.1e-190 670.2 437 71.6
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.3e-188 663.3 438 75.8
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 2.4e-187 659.1 426 72.3
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 2.4e-187 659.1 339 91.7
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.8e-185 652.9 437 68.9
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 1.6e-183 646.4 338 91.1
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 4.9e-180 634.8 426 70.0
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 3.5e-178 628.6 436 66.5
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 1.6e-175 619.8 339 85.3
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 2.8e-175 619.0 329 87.8
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 2.4e-174 615.9 432 66.9
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 9.0e-174 614.0 387 75.7
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 2.7e-170 602.4 436 65.1
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 2.5e-168 595.9 354 81.4
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.3e-167 593.6 433 69.3
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.3e-164 583.6 441 63.3
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 3.2e-163 578.9 441 62.1
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 3.0e-161 572.4 426 62.0
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 3.0e-161 572.4 293 91.8
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.5e-160 570.1 439 62.9
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.9e-147 526.6 337 73.6
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 7.2e-147 524.6 354 70.3
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 3.0e-145 519.2 427 59.0
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 4.5e-141 505.4 381 67.5
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 1.4e-129 467.2 432 52.5
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 1.7e-119 433.7 351 64.1
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 2.8e-114 416.4 242 81.0
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.7e-111 407.1 223 85.7
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 4.4e-96 355.9 228 75.4
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 4.0e-81 306.2 187 76.5
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.0e-76 290.0 157 88.5
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.4e-72 276.6 151 84.8
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 7.9e-69 265.4 144 86.1
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 7.9e-69 265.4 197 68.5
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.5e-62 243.8 133 86.5
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.7e-61 240.4 229 57.6
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.3e-50 204.9 112 85.7
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 6.5e-47 192.6 107 78.5
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 2.2e-42 177.6 137 67.2
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 7.2e-38 162.5 88 86.4
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.7e-37 160.6 93 80.6
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 1.7e-34 151.4 165 51.5
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 2.4e-33 147.5 82 86.6
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 1.0e-31 142.1 204 39.7
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.1e-25 122.1 85 69.4
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 9.1e-25 119.0 269 33.8
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 5.0e-23 113.2 67 71.6
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 1.0e-20 105.5 62 80.6
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 1.4e-20 105.1 72 62.5
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 1.8e-20 104.8 57 77.2
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 2.0e-16 91.3 121 45.5
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 2.7e-13 80.9 94 50.0
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 1.4e-12 78.6 38 86.8
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 7.5e-11 72.8 46 71.7
Gohir.D01G181400 Gossypium hirsutum HOM05D002051 ORTHO05D002041 1.3e-10 72.0 393 22.4
Gorai.002G221000 Gossypium raimondii HOM05D002051 ORTHO05D002041 2.8e-10 70.9 393 22.4
PGR044G1898 Punica granatum HOM05D002051 ORTHO05D002041 3.7e-10 70.5 393 22.9
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 1.8e-09 68.2 81 48.1
COL.COLO4_12209 Corchorus olitorius HOM05D002051 ORTHO05D002041 2.4e-09 67.8 389 21.3
Hma1.2p1_2649F.1_g326132 Hydrangea macrophylla HOM05D000617 ORTHO05D000478 3.8e-07 60.5 224 26.3
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 5.0e-07 60.1 35 74.3
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 8.6e-07 59.3 69 49.3
Os01g0560000 Oryza sativa ssp. japonica HOM05D000617 ORTHO05D000478 1.9e-06 58.2 191 27.2


User provided reference genes

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