Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 0.0e+00 1351.7 694 100.0
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 0.0e+00 1186.8 729 84.1
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 0.0e+00 1171.8 692 85.5
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 0.0e+00 1166.4 692 85.8
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 0.0e+00 1159.8 693 84.6
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 0.0e+00 1149.4 693 84.0
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 0.0e+00 1140.9 691 84.4
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 0.0e+00 1139.0 694 83.0
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 0.0e+00 1138.3 694 83.0
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 0.0e+00 1128.6 697 82.8
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 0.0e+00 1127.9 691 82.5
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 0.0e+00 1125.9 694 82.9
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 0.0e+00 1117.8 696 81.9
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 0.0e+00 1109.7 690 81.6
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 0.0e+00 1107.8 692 81.6
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 0.0e+00 1107.4 694 82.1
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 0.0e+00 1105.5 687 81.8
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 0.0e+00 1105.5 697 81.3
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 0.0e+00 1103.2 690 81.4
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 0.0e+00 1102.8 697 81.1
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 0.0e+00 1100.9 739 78.5
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 0.0e+00 1096.6 697 81.2
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 0.0e+00 1095.9 697 80.8
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 0.0e+00 1094.7 697 80.5
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 0.0e+00 1094.0 695 81.7
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 0.0e+00 1092.4 687 80.9
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 0.0e+00 1091.3 697 80.5
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 0.0e+00 1090.5 695 80.7
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 0.0e+00 1087.0 695 80.7
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 0.0e+00 1087.0 695 79.3
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 0.0e+00 1086.2 698 80.5
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 0.0e+00 1085.5 698 79.9
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 0.0e+00 1085.5 697 80.6
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 0.0e+00 1085.1 690 80.0
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 0.0e+00 1085.1 693 80.1
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 0.0e+00 1084.7 687 80.5
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 0.0e+00 1084.3 697 80.2
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 0.0e+00 1083.2 689 79.5
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 0.0e+00 1081.6 691 80.0
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 0.0e+00 1077.0 694 80.3
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 4.7e-312 1074.7 692 79.9
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 3.3e-311 1071.2 680 80.9
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 5.7e-311 1070.5 693 79.2
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 1.2e-310 1069.3 694 78.8
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 1.2e-310 1069.3 694 78.8
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 1.2e-310 1069.3 694 78.2
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 3.6e-310 1067.8 698 78.5
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 4.7e-310 1067.4 689 78.7
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 6.1e-310 1067.0 694 79.0
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 1.0e-309 1066.2 695 78.6
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 1.0e-309 1066.2 741 75.3
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 1.0e-309 1066.2 697 79.1
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 1.7e-307 1058.9 696 79.7
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 4.1e-306 1054.3 693 77.9
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 1.6e-305 1052.4 698 77.5
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 2.0e-305 1052.0 693 77.6
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 2.7e-305 1051.6 693 77.8
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 3.5e-305 1051.2 717 74.1
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 3.5e-305 1051.2 698 78.1
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 2.0e-300 1035.4 648 81.8
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 5.7e-300 1033.9 692 77.2
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 1.7e-299 1032.3 697 76.5
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 2.2e-299 1031.9 800 68.6
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 5.4e-298 1027.3 696 77.2
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 1.0e-296 1023.1 710 75.6
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 1.0e-296 1023.1 698 76.8
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 6.6e-296 1020.4 694 76.2
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 8.6e-296 1020.0 693 76.6
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 1.1e-295 1019.6 694 75.9
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 9.5e-295 1016.5 694 75.9
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 2.8e-294 1015.0 695 75.5
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 1.4e-293 1012.7 695 75.8
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 1.5e-292 1009.2 1202 51.3
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 8.3e-291 1003.4 695 75.4
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 1.9e-290 1002.3 695 75.0
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 1.9e-290 1002.3 694 74.8
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 2.4e-290 1001.9 695 74.8
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 3.2e-290 1001.5 695 74.8
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 7.0e-290 1000.3 693 75.0
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 1.2e-289 999.6 695 74.7
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 1.2e-289 999.6 695 74.7
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 5.0e-288 994.2 692 74.9
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 3.1e-285 984.9 695 73.7
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 4.6e-281 971.1 694 72.3
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 9.2e-274 946.8 703 69.7
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 8.4e-267 923.7 555 84.9
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 1.1e-266 923.3 692 70.2
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 1.6e-262 909.4 689 69.2
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 3.2e-250 868.6 776 62.9
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 8.1e-246 854.0 570 76.7
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 1.1e-242 843.6 535 80.4
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 5.5e-242 841.3 719 62.3
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 5.1e-232 808.1 718 58.9
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 5.0e-227 791.6 466 83.9
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 1.5e-223 780.0 511 78.3
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 5.7e-223 778.1 519 77.1
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 7.2e-210 734.6 642 59.7
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 3.7e-206 722.2 698 57.2
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 1.1e-197 694.1 413 83.1
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 3.5e-140 503.1 714 42.0
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 3.3e-138 496.5 701 41.7
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 6.7e-131 472.2 709 39.9
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 4.3e-130 469.5 691 45.9
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 4.0e-128 463.0 694 44.7
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 1.3e-123 448.0 273 87.2
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 2.5e-122 443.7 268 84.3
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 3.0e-115 420.2 475 49.7
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 6.7e-115 419.1 658 43.9
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 1.5e-114 417.9 232 90.5
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 1.4e-99 368.2 436 54.8
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 3.2e-93 347.1 679 37.4
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 4.2e-93 346.7 248 74.2
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 5.7e-82 309.7 223 73.5
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 1.4e-75 288.5 296 55.7
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 5.2e-67 260.0 205 68.3
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 6.4e-65 253.1 167 74.3
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 2.2e-49 201.4 143 74.1
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 2.2e-49 201.4 143 74.1
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 8.4e-41 172.9 101 82.2
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 6.0e-39 166.8 125 72.8
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 3.6e-28 131.0 120 55.8
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 2.0e-26 125.2 217 41.9
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 4.9e-25 120.6 84 67.9
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 2.0e-18 98.6 73 78.1
Zm00001eb399610 Zea mays HOM05D001176 ORTHO05D007019 3.5e-15 87.8 152 38.2
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 1.9e-13 82.0 64 65.6


User provided reference genes

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