Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G075100 Carya illinoinensis HOM05D008997 ORTHO05D011051 2.8e-71 271.9 145 100.0
QL12p004181 Quercus lobata HOM05D008997 ORTHO05D011051 1.5e-37 159.8 148 61.5
Lalb_Chr05g0215081 Lupinus albus HOM05D008997 ORTHO05D011051 3.3e-24 115.5 138 50.0
Lalb_Chr09g0324991 Lupinus albus HOM05D008997 ORTHO05D011051 5.6e-24 114.8 139 48.9
VMungo0464G1626 Vigna mungo HOM05D008997 ORTHO05D011051 1.6e-23 113.2 132 55.3
Medtr5g025520 Medicago truncatula HOM05D008997 ORTHO05D011051 2.1e-23 112.8 135 50.4
Psat2g145480 Pisum sativum HOM05D008997 ORTHO05D011051 2.8e-23 112.5 137 49.6
Ca_25045_v3 Cicer arietinum L. HOM05D008997 ORTHO05D011051 6.2e-23 111.3 136 49.3
Phvul.002G121500 Phaseolus vulgaris HOM05D008997 ORTHO05D011051 1.4e-22 110.2 131 53.4
Phvul.004G038900 Phaseolus vulgaris HOM05D008997 ORTHO05D011051 5.3e-22 108.2 132 53.0
Glyma.11G090500 Glycine max HOM05D008997 ORTHO05D011051 3.4e-21 105.5 133 52.6
Lj2g0013331 Lotus japonicus HOM05D008997 ORTHO05D011051 1.7e-20 103.2 136 50.7
Cfa012292 Carpinus fangiana HOM05D008997 ORTHO05D011051 1.9e-19 99.8 73 69.9
arahy.Tifrunner.gnm1.ann1.G1G4QR Arachis hypogaea HOM05D008997 ORTHO05D011051 2.5e-19 99.4 159 42.8
arahy.Tifrunner.gnm1.ann1.QSM4Y5 Arachis hypogaea HOM05D008997 ORTHO05D011051 2.5e-19 99.4 159 42.8
MD08G1001500 Malus domestica HOM05D008997 ORTHO05D011051 1.3e-17 93.6 138 47.8
MD15G1000800 Malus domestica HOM05D008997 ORTHO05D011051 2.3e-17 92.8 138 47.8
Haze_08436 Corylus avellana HOM05D000827 ORTHO05D001318 1.1e-16 90.5 145 38.6
TPR.G8981 Trifolium pratense HOM05D008997 ORTHO05D011051 1.5e-16 90.1 133 39.1
Prupe.1G353500 Prunus persica HOM05D008997 ORTHO05D011051 2.5e-16 89.4 138 45.7
Atru.chr8.2628 Acer truncatum HOM05D008997 ORTHO05D011051 1.3e-15 87.0 104 51.0
FAN21G2282 Fragaria x ananassa HOM05D006577 ORTHO05D011051 1.6e-15 86.7 104 49.0
RcHm_v2.0_Chr6g0304331 Rosa chinensis HOM05D008997 ORTHO05D011051 1.6e-15 86.7 104 51.0
FvH4_2g37377 Fragaria vesca HOM05D008997 ORTHO05D011051 6.3e-15 84.7 138 42.0
PGR031G0389 Punica granatum HOM05D008997 ORTHO05D011051 8.2e-15 84.3 111 47.7
FAN20G0322 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.1e-14 84.0 143 42.0
Ciclev10013116m.g Citrus clementina HOM05D008997 ORTHO05D011051 1.4e-14 83.6 75 54.7
Eucgr.D02561 Eucalyptus grandis HOM05D008997 ORTHO05D011051 4.1e-14 82.0 76 53.9
FAN21G2626 Fragaria x ananassa HOM05D006577 ORTHO05D011051 4.1e-14 82.0 149 41.6
Sed0009134 Sechium edule HOM05D008997 ORTHO05D011051 4.1e-14 82.0 83 53.0
FAN21G2462 Fragaria x ananassa HOM05D006577 ORTHO05D011051 6.9e-14 81.3 141 42.6
COL.COLO4_11281 Corchorus olitorius HOM05D008997 ORTHO05D011051 9.0e-14 80.9 71 59.2
FAN21G1803 Fragaria x ananassa HOM05D008997 ORTHO05D011051 1.2e-13 80.5 138 41.3
Thecc.03G319000 Theobroma cacao HOM05D008997 ORTHO05D011051 1.5e-13 80.1 91 48.4
FAN21G1189 Fragaria x ananassa HOM05D008997 ORTHO05D011051 2.0e-13 79.7 142 40.8
FAN21G2299 Fragaria x ananassa HOM05D006577 ORTHO05D008428 3.4e-13 79.0 138 40.6
Sabra05G0064400 Salix brachista HOM05D008997 ORTHO05D011051 2.5e-11 72.8 67 55.2
FAN21G1848 Fragaria x ananassa HOM05D008997 ORTHO05D011051 3.2e-11 72.4 153 37.9
FAN27G1108 Fragaria x ananassa HOM05D008997 ORTHO05D011051 5.5e-11 71.6 153 37.3
Potri.005G078400 Populus trichocarpa HOM05D008997 ORTHO05D011051 7.9e-10 67.8 87 43.7
THA.LOC104798526 Tarenaya hassleriana HOM05D013199 ORTHO05D015353 3.0e-09 65.9 68 45.6
CARHR018110 Cardamine hirsuta HOM05D013199 ORTHO05D015353 2.0e-08 63.2 101 39.6
Manes.10G091000 Manihot esculenta HOM05D008997 ORTHO05D011051 2.0e-08 63.2 85 38.8
Actinidia31732 Actinidia chinensis HOM05D000827 ORTHO05D001318 3.3e-08 62.4 104 31.7
CARHR242480 Cardamine hirsuta HOM05D000827 ORTHO05D001318 3.3e-08 62.4 103 33.0
Eucgr.G01289 Eucalyptus grandis HOM05D000827 ORTHO05D001318 4.3e-08 62.0 105 38.1
Sabra09G0070900 Salix brachista HOM05D000827 ORTHO05D001318 4.3e-08 62.0 85 41.2
Potri.009G092200 Populus trichocarpa HOM05D000827 ORTHO05D001318 5.7e-08 61.6 85 41.2
Sed0001641 Sechium edule HOM05D000827 ORTHO05D001318 5.7e-08 61.6 100 39.0
Carub.0007s0607 Capsella rubella HOM05D000827 ORTHO05D001318 9.7e-08 60.8 97 37.1
AL1G29800 Arabidopsis lyrata HOM05D013199 ORTHO05D015353 1.3e-07 60.5 101 42.6
CSS0013162 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 1.3e-07 60.5 100 39.0
GSVIVG01019325001 Vitis vinifera HOM05D000827 ORTHO05D001318 1.3e-07 60.5 73 41.1
AL7G16980 Arabidopsis lyrata HOM05D000827 ORTHO05D001318 1.7e-07 60.1 102 35.3
Carub.0003s2888 Capsella rubella HOM05D000827 ORTHO05D001318 1.7e-07 60.1 99 33.3
Cfa012293 Carpinus fangiana HOM05D000827 ORTHO05D001318 1.7e-07 60.1 109 33.9
Glyma.11G090400 Glycine max HOM05D000827 ORTHO05D001318 1.7e-07 60.1 73 42.5
Glyma.01G154200 Glycine max HOM05D000827 ORTHO05D001318 2.2e-07 59.7 69 43.5
Potri.001G297400 Populus trichocarpa HOM05D000827 ORTHO05D001318 2.2e-07 59.7 85 42.4
AT4G34290 Arabidopsis thaliana HOM05D000827 ORTHO05D001318 3.7e-07 58.9 102 34.3
Hma1.2p1_0680F.1_g202390 Hydrangea macrophylla HOM05D000827 ORTHO05D001318 3.7e-07 58.9 108 34.3
RcHm_v2.0_Chr6g0254211 Rosa chinensis HOM05D000827 ORTHO05D001318 3.7e-07 58.9 89 34.8
Lalb_Chr05g0210761 Lupinus albus HOM05D000827 ORTHO05D001318 4.8e-07 58.5 75 40.0
Actinidia05830 Actinidia chinensis HOM05D000827 ORTHO05D001318 6.3e-07 58.2 65 38.5
Aa31LG8G12940 Aethionema arabicum HOM05D000827 ORTHO05D001318 6.3e-07 58.2 99 32.3
Aa31sc72G70 Aethionema arabicum HOM05D000827 ORTHO05D001318 6.3e-07 58.2 75 38.7
AL3G46700 Arabidopsis lyrata HOM05D000827 ORTHO05D001318 6.3e-07 58.2 99 32.3
AT1G17510 Arabidopsis thaliana HOM05D013199 ORTHO05D015353 8.2e-07 57.8 101 39.6
AT2G14880 Arabidopsis thaliana HOM05D000827 ORTHO05D001318 8.2e-07 57.8 99 32.3
CDE02G1634 Ceratophyllum demersum HOM05D000827 ORTHO05D001318 8.2e-07 57.8 107 34.6
HanXRQChr01g0018471 Helianthus annuus HOM05D000827 ORTHO05D001318 8.2e-07 57.8 82 37.8
Carub.0001s1728 Capsella rubella HOM05D013199 ORTHO05D015353 1.1e-06 57.4 122 36.1
COL.COLO4_32550 Corchorus olitorius HOM05D000827 ORTHO05D001318 1.1e-06 57.4 75 40.0
Hma1.2p1_1174F.1_g263910 Hydrangea macrophylla HOM05D000827 ORTHO05D001318 1.1e-06 57.4 95 37.9
PSO063G1923 Papaver somniferum HOM05D000827 ORTHO05D001318 1.1e-06 57.4 110 34.5
SGA_v2.0_scaffold98G29374 Striga asiatica HOM05D000827 ORTHO05D001318 1.1e-06 57.4 102 33.3
CDE09G0627 Ceratophyllum demersum HOM05D000827 ORTHO05D001318 1.4e-06 57.0 75 38.7
Ciclev10029545m.g Citrus clementina HOM05D000827 ORTHO05D001318 1.4e-06 57.0 101 36.6
Nitab4.5_0004396g0010 Nicotiana tabacum HOM05D000827 ORTHO05D001318 1.4e-06 57.0 111 34.2
Sabra16G0186400 Salix brachista HOM05D000827 ORTHO05D001318 1.4e-06 57.0 75 40.0
Sp3g28300 Schrenkiella parvula HOM05D000827 ORTHO05D001318 1.4e-06 57.0 99 34.3
TAR636G2815 Trochodendron aralioides HOM05D000827 ORTHO05D001318 1.4e-06 57.0 111 32.4
CSS0043160 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 1.8e-06 56.6 118 34.7
Duzib132G0744 Durio zibethinus HOM05D000827 ORTHO05D001318 1.8e-06 56.6 82 32.9
vmacro13599 Vaccinium macrocarpon HOM05D000827 ORTHO05D001318 1.8e-06 56.6 69 39.1
Lj2g0023362 Lotus japonicus HOM05D000827 ORTHO05D001318 2.4e-06 56.2 128 31.2
FvH4_2g04600 Fragaria vesca HOM05D000827 ORTHO05D001318 3.1e-06 55.8 99 33.3
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 3.1e-06 55.8 99 33.3
Gohir.A08G149400 Gossypium hirsutum HOM05D000827 ORTHO05D001318 3.1e-06 55.8 69 40.6
PSO017G6582 Papaver somniferum HOM05D000827 ORTHO05D001318 3.1e-06 55.8 110 33.6
QL04p053399 Quercus lobata HOM05D000827 ORTHO05D001318 3.1e-06 55.8 84 34.5
vmacro00092 Vaccinium macrocarpon HOM05D000827 ORTHO05D001318 3.1e-06 55.8 104 32.7
Dinv37426 Davidia involucrata HOM05D000827 ORTHO05D001318 4.1e-06 55.5 107 31.8
Duzib052G0022 Durio zibethinus HOM05D000827 ORTHO05D001318 4.1e-06 55.5 103 33.0
Gohir.D08G170400 Gossypium hirsutum HOM05D000827 ORTHO05D001318 4.1e-06 55.5 69 40.6
TAR376G0708 Trochodendron aralioides HOM05D000827 ORTHO05D001318 4.1e-06 55.5 93 33.3
TAR629G0081 Trochodendron aralioides HOM05D000827 ORTHO05D001318 4.1e-06 55.5 111 33.3
Atru.chr5.2422 Acer truncatum HOM05D000827 ORTHO05D001318 5.3e-06 55.1 75 38.7
EL10Ac4g08090 Beta vulgaris HOM05D000827 ORTHO05D001318 5.3e-06 55.1 77 39.0
Ca_24348_v3 Cicer arietinum L. HOM05D000827 ORTHO05D001318 5.3e-06 55.1 101 32.7
COL.COLO4_11280 Corchorus olitorius HOM05D000827 ORTHO05D001318 5.3e-06 55.1 109 31.2
Migut.B01419 Erythranthe guttata HOM05D000827 ORTHO05D001318 5.3e-06 55.1 101 31.7
FAN15G0914 Fragaria x ananassa HOM05D000827 ORTHO05D001318 5.3e-06 55.1 99 33.3
FAN20G2663 Fragaria x ananassa HOM05D000827 ORTHO05D001318 5.3e-06 55.1 99 33.3
Manes.10G072700 Manihot esculenta HOM05D000827 ORTHO05D001318 5.3e-06 55.1 92 35.9
THA.LOC104819539 Tarenaya hassleriana HOM05D000827 ORTHO05D001318 5.3e-06 55.1 103 33.0
TWI31G1098 Tripterygium wilfordii HOM05D000827 ORTHO05D001318 5.3e-06 55.1 75 41.3
GSVIVG01036871001 Vitis vinifera HOM05D000827 ORTHO05D001318 5.3e-06 55.1 115 32.2
ATR0568G208 Amborella trichopoda HOM05D000827 ORTHO05D001318 6.9e-06 54.7 110 33.6
BolC1t00434H Brassica oleracea HOM05D000827 ORTHO05D001318 6.9e-06 54.7 97 38.1
BraA01t00400Z Brassica rapa HOM05D000827 ORTHO05D001318 6.9e-06 54.7 97 38.1
CiPaw.06G167600 Carya illinoinensis HOM05D000827 ORTHO05D001318 6.9e-06 54.7 75 37.3
Hma1.2p1_1023F.1_g248950 Hydrangea macrophylla HOM05D000827 ORTHO05D001318 6.9e-06 54.7 98 38.8
Rhsim11G0036900 Rhododendron simsii HOM05D000827 ORTHO05D001318 6.9e-06 54.7 102 32.4
C01p04480 Brassica napus HOM05D000827 ORTHO05D001318 9.1e-06 54.3 97 37.1
Ciclev10033040m.g Citrus clementina HOM05D000827 ORTHO05D001318 9.1e-06 54.3 69 39.1
MD02G1231800 Malus domestica HOM05D000827 ORTHO05D001318 9.1e-06 54.3 82 34.1
Prupe.8G139100 Prunus persica HOM05D000827 ORTHO05D001318 9.1e-06 54.3 101 31.7
SEGI_40966 Sequoiadendron giganteum HOM05D000827 ORTHO05D001318 9.1e-06 54.3 90 31.1


User provided reference genes

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