Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 1.2e-180 636.3 315 100.0
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 1.2e-148 530.0 328 81.4
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 1.1e-141 506.9 326 78.5
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 2.7e-140 502.3 330 77.3
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 7.9e-140 500.7 328 76.5
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 7.9e-140 500.7 326 77.3
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 3.0e-139 498.8 329 76.0
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 3.0e-139 498.8 329 76.0
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 5.2e-139 498.0 315 80.0
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 1.5e-138 496.5 327 77.1
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 2.6e-138 495.7 324 77.8
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 1.8e-136 489.6 330 75.8
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 9.1e-136 487.3 316 77.5
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 4.5e-135 485.0 352 72.2
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 3.8e-134 481.9 325 75.1
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 5.0e-134 481.5 315 76.8
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 6.5e-134 481.1 340 74.4
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.1e-133 480.3 315 75.9
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 1.9e-133 479.6 325 73.5
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 1.2e-132 476.9 328 73.5
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 2.7e-132 475.7 323 73.7
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 6.1e-132 474.6 323 73.4
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 8.0e-132 474.2 336 73.2
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 6.7e-131 471.1 328 72.6
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.5e-130 469.9 321 75.4
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 2.0e-130 469.5 342 71.1
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 2.0e-130 469.5 338 73.1
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 2.6e-130 469.2 315 74.9
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 7.5e-130 467.6 338 71.3
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 9.7e-130 467.2 328 72.3
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.3e-129 466.8 335 72.2
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 1.3e-129 466.8 335 72.2
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 2.2e-129 466.1 316 75.0
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 3.7e-129 465.3 323 73.7
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 4.8e-129 464.9 338 70.4
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 1.4e-128 463.4 317 73.2
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 1.2e-127 460.3 320 71.6
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 1.0e-126 457.2 331 71.0
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 2.2e-126 456.1 336 70.5
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 7.2e-125 451.1 316 71.5
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 9.4e-125 450.7 328 68.9
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.8e-123 446.4 315 70.8
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 3.0e-123 445.7 318 70.1
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 4.0e-123 445.3 324 69.1
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 2.0e-122 443.0 385 62.3
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 3.4e-122 442.2 384 63.0
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 5.7e-122 441.4 340 67.1
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 5.7e-122 441.4 331 67.4
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 2.2e-121 439.5 331 67.7
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 3.7e-121 438.7 341 65.4
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 6.3e-121 438.0 327 68.2
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 1.1e-120 437.2 330 69.4
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 1.4e-120 436.8 331 68.0
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 9.1e-120 434.1 264 80.7
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 1.2e-119 433.7 386 61.7
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.6e-119 433.3 291 76.6
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 2.0e-119 433.0 335 67.2
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 5.9e-119 431.4 335 66.6
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 2.9e-118 429.1 273 79.5
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 1.5e-117 426.8 334 65.3
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.9e-117 426.4 353 63.2
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 4.2e-117 425.2 361 61.5
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.2e-116 423.7 329 66.3
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 1.6e-116 423.3 374 62.6
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 2.8e-116 422.5 354 63.8
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 1.8e-115 419.9 274 74.1
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 2.3e-115 419.5 331 65.3
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 4.0e-115 418.7 381 61.2
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 6.8e-115 417.9 306 69.3
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 6.8e-115 417.9 274 73.7
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 2.0e-114 416.4 384 59.4
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 7.5e-114 414.5 254 79.1
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 2.8e-113 412.5 274 73.0
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 4.9e-113 411.8 333 64.3
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 6.3e-113 411.4 347 63.1
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 1.6e-111 406.8 330 63.9
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 8.6e-110 401.0 388 57.0
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 1.1e-109 400.6 341 63.6
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 2.5e-109 399.4 340 61.2
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.2e-108 397.1 389 56.3
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 2.1e-108 396.4 349 63.3
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 8.9e-107 391.0 287 68.3
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 1.2e-103 380.6 214 82.7
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 1.6e-103 380.2 298 64.1
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 2.0e-103 379.8 207 84.5
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 1.1e-101 374.0 361 54.8
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 4.3e-101 372.1 342 57.6
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 7.3e-101 371.3 326 59.2
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 7.3e-101 371.3 317 63.4
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 2.3e-99 366.3 293 64.5
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 6.8e-99 364.8 283 64.3
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 1.5e-98 363.6 321 57.6
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 3.4e-98 362.5 325 57.8
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 1.7e-97 360.1 364 56.0
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 2.9e-97 359.4 310 60.0
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 1.4e-96 357.1 327 57.5
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 1.6e-95 353.6 322 57.1
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 1.7e-94 350.1 361 54.0
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 8.6e-94 347.8 322 57.1
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 5.6e-93 345.1 340 55.0
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.6e-90 336.3 274 63.5
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 1.1e-88 330.9 315 53.3
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 2.1e-87 326.6 324 52.2
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 1.3e-86 323.9 323 52.9
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 1.3e-86 323.9 323 52.9
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 8.6e-86 321.2 323 52.6
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 1.2e-84 317.4 245 69.8
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.8e-84 316.2 386 48.4
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 1.1e-83 314.3 322 51.6
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 8.9e-83 311.2 323 51.7
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 2.0e-82 310.1 323 50.8
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 5.8e-82 308.5 323 50.8
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 1.3e-81 307.4 319 50.8
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 2.2e-81 306.6 322 50.6
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 1.4e-80 303.9 329 51.4
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 1.2e-79 300.8 174 82.2
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 1.1e-72 277.7 159 79.2
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 2.1e-71 273.5 160 78.8
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 9.6e-69 264.6 264 50.4
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 1.8e-67 260.4 251 57.4
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 7.9e-63 245.0 150 80.0
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.3e-62 244.2 153 76.5
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 2.3e-62 243.4 226 53.5
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 9.3e-56 221.5 310 40.6
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 7.6e-50 201.8 177 62.1
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 4.6e-47 192.6 113 80.5
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 2.8e-44 183.3 119 73.9
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 7.9e-39 165.2 290 38.6
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 4.3e-37 159.5 100 77.0
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 6.5e-33 145.6 101 70.3
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.6e-31 141.0 80 81.2
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 3.6e-23 113.2 119 59.7
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.6e-21 107.1 78 62.8
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.7e-20 104.4 119 57.1
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 5.5e-16 89.4 94 56.4
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 3.0e-14 83.6 44 86.4
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 4.0e-14 83.2 48 79.2
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 6.7e-14 82.4 55 78.2
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 1.5e-13 81.3 70 58.6
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 1.8e-06 57.8 441 19.5


User provided reference genes

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