Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 1.3e-176 622.9 302 100.0
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 1.5e-151 539.7 302 84.8
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 1.7e-147 526.2 327 79.2
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 6.5e-139 497.7 297 78.5
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 1.9e-138 496.1 297 78.1
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 2.5e-138 495.7 294 78.9
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 3.2e-138 495.4 300 78.0
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 7.1e-138 494.2 294 78.9
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 1.2e-137 493.4 294 77.2
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.6e-137 493.0 297 77.4
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 3.9e-136 488.4 297 78.8
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 1.1e-135 486.9 294 76.5
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 1.5e-135 486.5 294 77.2
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 2.5e-135 485.7 291 77.0
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 9.6e-135 483.8 295 78.0
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 1.3e-134 483.4 297 76.8
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 1.3e-134 483.4 286 78.0
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 1.6e-134 483.0 293 77.8
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 2.1e-134 482.6 294 76.2
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 3.7e-134 481.9 297 75.1
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 3.7e-134 481.9 293 76.5
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 4.8e-134 481.5 294 76.5
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 4.8e-134 481.5 298 76.2
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 8.2e-134 480.7 293 77.5
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 1.1e-133 480.3 297 75.8
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 1.8e-133 479.6 297 75.4
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 4.1e-133 478.4 291 77.3
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 5.3e-133 478.0 300 75.0
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 9.0e-133 477.2 297 74.7
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 1.5e-132 476.5 298 75.8
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 2.0e-132 476.1 287 76.7
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 2.6e-132 475.7 294 77.2
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 2.6e-132 475.7 297 74.4
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 2.6e-132 475.7 297 74.4
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 2.6e-132 475.7 297 74.4
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 3.4e-132 475.3 294 75.5
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 3.4e-132 475.3 293 75.1
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 4.5e-132 474.9 294 75.2
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 5.8e-132 474.6 295 76.3
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 7.6e-132 474.2 306 74.5
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 1.3e-131 473.4 302 73.5
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 1.7e-131 473.0 296 73.6
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 2.2e-131 472.6 297 74.4
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 3.8e-131 471.9 298 73.5
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 5.0e-131 471.5 304 74.7
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 6.5e-131 471.1 294 74.5
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 8.4e-131 470.7 296 74.0
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 1.1e-130 470.3 399 61.2
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 1.1e-130 470.3 294 75.9
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 1.4e-130 469.9 302 72.2
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 1.9e-130 469.5 298 74.2
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 2.5e-130 469.2 294 74.1
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 2.5e-130 469.2 304 74.0
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 3.2e-130 468.8 295 74.9
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 4.2e-130 468.4 294 73.1
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 5.5e-130 468.0 302 73.8
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 1.2e-129 466.8 298 72.1
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 1.2e-129 466.8 287 76.0
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 1.6e-129 466.5 294 74.8
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 2.7e-129 465.7 293 74.7
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 6.1e-129 464.5 296 74.0
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 3.0e-128 462.2 294 73.8
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 3.9e-128 461.8 294 73.5
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 3.9e-128 461.8 292 72.6
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 6.7e-128 461.1 260 81.9
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 3.3e-127 458.8 296 74.3
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 5.7e-127 458.0 298 72.8
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 5.7e-127 458.0 285 74.4
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 1.6e-126 456.4 293 71.0
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 4.8e-126 454.9 294 72.4
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 8.2e-126 454.1 304 71.1
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 1.4e-125 453.4 297 72.4
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 1.8e-125 453.0 291 73.5
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 1.8e-125 453.0 294 71.8
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 9.0e-125 450.7 277 75.5
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 3.4e-124 448.7 303 73.3
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 5.9e-124 448.0 298 71.5
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 1.0e-123 447.2 300 73.3
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 1.0e-123 447.2 294 70.7
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 5.0e-123 444.9 296 71.3
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 1.9e-122 443.0 314 67.8
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 7.2e-122 441.0 290 71.4
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 8.8e-120 434.1 292 68.8
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 2.5e-119 432.6 311 68.8
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 4.1e-117 425.2 302 66.6
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 5.3e-117 424.9 294 70.7
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 1.0e-115 420.6 286 70.6
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 5.0e-115 418.3 258 75.6
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 5.0e-115 418.3 279 69.5
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 4.7e-113 411.8 277 70.4
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 8.8e-112 407.5 296 67.6
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 1.1e-111 407.1 318 63.5
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 7.4e-111 404.4 270 71.9
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 1.5e-108 396.7 295 65.4
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 1.5e-108 396.7 295 65.4
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 2.9e-107 392.5 291 65.3
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 8.0e-105 384.4 249 73.1
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 5.7e-103 378.3 212 83.5
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 2.2e-99 366.3 211 81.0
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 2.9e-99 365.9 296 61.1
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 8.8e-96 354.4 288 61.8
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 3.4e-95 352.4 252 67.5
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 3.7e-94 349.0 263 60.8
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 1.3e-91 340.5 202 78.7
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 1.7e-91 340.1 202 77.2
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 1.1e-90 337.4 243 70.4
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 4.7e-89 332.0 250 66.4
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 2.6e-71 273.1 294 51.0
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 8.3e-70 268.1 265 49.4
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 1.6e-68 263.8 223 61.4
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 1.5e-66 257.3 245 51.4
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 5.8e-63 245.4 270 51.1
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 6.4e-54 215.3 175 61.1
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 1.4e-53 214.2 261 44.8
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 9.2e-53 211.5 286 45.8
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 7.8e-52 208.4 146 69.2
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 2.3e-51 206.8 129 74.4
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 2.6e-39 166.8 97 79.4
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 7.1e-37 158.7 163 54.0
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 8.1e-33 145.2 101 69.3
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 1.2e-31 141.4 81 76.5
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 3.2e-29 133.3 107 59.8
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 4.6e-28 129.4 66 80.3
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 1.1e-16 91.7 67 65.7
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 2.6e-15 87.0 56 73.2
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 8.7e-11 72.0 57 61.4
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 6.9e-08 62.4 58 53.4
Lsat_1_v5_gn_2_23540 Lactuca sativa HOM05D002379 ORTHO05D003469 1.0e-06 58.5 91 36.3
Lsat_1_v5_gn_8_14120 Lactuca sativa HOM05D002379 ORTHO05D021531 1.0e-06 58.5 91 36.3
Lsat_1_v5_gn_9_81181 Lactuca sativa HOM05D002379 ORTHO05D003469 1.0e-06 58.5 91 36.3
MELO3C000773.2 Cucumis melo HOM05D006150 ORTHO05D007745 3.8e-06 56.6 39 69.2


User provided reference genes

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