Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 0.0e+00 1565.1 844 100.0
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 0.0e+00 1243.8 840 81.8
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 0.0e+00 1224.9 842 79.0
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 0.0e+00 1223.4 842 79.3
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 0.0e+00 1137.5 840 74.3
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 0.0e+00 1115.5 843 72.7
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 0.0e+00 1104.4 838 72.0
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 0.0e+00 1102.8 845 72.7
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 0.0e+00 1092.8 842 70.7
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 0.0e+00 1090.9 851 73.1
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 0.0e+00 1089.3 839 71.2
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 0.0e+00 1088.9 828 70.8
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 0.0e+00 1086.6 834 72.2
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 0.0e+00 1084.3 839 70.6
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 0.0e+00 1080.9 832 72.5
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 5.8e-312 1074.7 848 69.8
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 5.8e-312 1074.3 838 69.3
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 5.8e-312 1074.3 829 71.8
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 2.9e-311 1071.6 838 69.5
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 2.9e-311 1071.6 834 69.1
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 6.9e-311 1070.5 840 71.3
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 8.7e-311 1070.1 833 69.1
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 2.0e-310 1068.9 841 69.9
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 7.4e-310 1067.0 840 71.3
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 3.7e-309 1064.7 842 68.9
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 6.3e-309 1063.9 843 68.2
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 7.0e-308 1060.4 842 68.5
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 1.2e-307 1059.7 845 69.3
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 1.6e-307 1059.3 840 69.4
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 3.2e-305 1051.6 845 68.4
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 4.2e-305 1051.2 847 70.1
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 4.2e-305 1051.2 841 68.0
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 4.2e-305 1051.2 837 68.1
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 4.2e-305 1051.2 830 68.6
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 7.2e-305 1050.4 830 68.6
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 9.4e-305 1050.0 839 67.8
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 8.8e-303 1043.5 840 68.2
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 2.0e-302 1042.3 841 68.6
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 3.4e-302 1041.6 826 69.2
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 3.4e-302 1041.6 841 67.8
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 4.4e-302 1041.2 839 68.3
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 5.9e-299 1030.8 833 67.8
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 1.3e-298 1029.6 843 68.4
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 1.7e-298 1029.2 841 68.5
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.9e-298 1028.5 841 68.8
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 5.0e-298 1027.7 840 68.2
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 2.5e-297 1025.4 839 69.0
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 3.0e-295 1018.5 838 67.3
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.2e-294 1016.5 861 67.9
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.9e-293 1011.1 841 67.3
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 3.0e-287 991.9 853 64.7
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 3.4e-286 988.4 835 65.6
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 2.2e-285 985.7 840 66.3
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 3.7e-285 984.9 836 66.3
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 4.1e-284 981.5 837 66.9
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 2.7e-283 978.8 849 66.5
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 5.0e-282 974.5 835 63.6
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 5.0e-282 974.5 837 63.7
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 3.3e-281 971.8 835 66.2
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 1.0e-279 966.8 839 64.4
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 5.2e-279 964.5 862 63.2
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 8.9e-279 963.8 847 62.8
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.4e-276 956.4 841 65.0
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 2.7e-275 952.2 827 66.0
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 3.9e-274 948.3 829 64.3
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 6.8e-271 937.6 843 63.3
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.9e-269 932.2 846 60.4
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 5.6e-265 917.9 828 64.0
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 2.1e-264 916.0 932 57.5
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 5.2e-263 911.4 840 59.3
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 1.5e-262 909.8 780 65.5
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 3.9e-258 895.2 847 58.8
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 8.6e-258 894.0 850 57.9
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.6e-256 889.8 836 60.8
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 2.0e-254 882.9 814 60.0
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 2.6e-254 882.5 814 61.4
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 4.4e-254 881.7 816 61.5
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 4.4e-254 881.7 816 61.5
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 2.9e-253 879.0 816 61.4
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 2.9e-253 879.0 841 59.1
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 4.9e-253 878.2 839 61.1
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 4.9e-253 878.2 839 61.1
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 3.5e-251 872.1 836 62.4
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 1.3e-250 870.2 834 59.2
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 5.6e-249 864.8 888 57.4
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 1.8e-247 859.8 842 58.8
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.8e-247 859.8 832 60.2
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 3.9e-242 842.0 847 58.2
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 1.5e-241 840.1 849 56.8
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 9.6e-241 837.4 836 58.3
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 3.1e-239 832.4 864 55.2
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 4.5e-238 828.6 841 55.6
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 4.9e-237 825.1 855 54.5
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 3.5e-227 792.3 855 54.5
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 5.3e-223 778.5 680 63.7
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 1.9e-220 770.0 678 61.9
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 1.1e-217 760.8 807 54.6
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 9.0e-215 751.1 847 52.1
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 2.7e-211 739.6 845 51.6
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 3.0e-202 709.5 626 61.0
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.9e-202 709.1 547 67.3
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.6e-185 653.3 603 63.5
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 1.3e-184 651.0 608 62.3
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 1.7e-157 560.8 882 41.0
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 1.2e-153 548.1 451 65.2
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 6.0e-150 535.8 852 43.4
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 2.9e-144 516.9 881 40.0
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 2.1e-139 500.7 825 41.3
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.4e-138 498.0 481 62.6
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 1.5e-137 494.6 379 70.7
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 8.4e-136 488.8 384 70.1
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 9.6e-124 448.7 450 62.2
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 7.9e-118 429.1 432 57.4
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.6e-115 421.4 310 71.9
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 1.8e-106 391.3 284 82.0
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 2.9e-104 384.0 923 32.4
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 5.7e-100 369.8 242 80.2
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 1.3e-99 368.6 293 65.2
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 2.4e-98 364.4 247 77.7
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 5.0e-96 356.7 227 80.2
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 3.0e-93 347.4 328 62.5
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 3.0e-93 347.4 445 47.2
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.8e-83 314.3 335 53.7
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 1.7e-75 288.5 200 74.0
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 2.5e-71 274.6 268 64.9
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 1.7e-67 261.9 821 30.1
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 3.8e-64 250.8 195 68.2
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 5.7e-60 236.9 152 75.0
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 2.7e-57 228.0 213 57.7
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 5.2e-53 213.8 181 62.4
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.0e-45 187.6 159 61.6
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 6.8e-45 186.8 206 53.4
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.0e-40 170.6 144 65.3
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 4.3e-39 167.5 159 60.4
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 2.3e-37 161.8 170 55.9
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.1e-34 152.9 182 48.4
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 7.1e-34 150.2 277 40.8
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 9.2e-34 149.8 123 68.3
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 6.0e-33 147.1 517 27.3
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 5.1e-32 144.1 279 39.4
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 1.9e-31 142.1 286 38.8
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 4.7e-30 137.5 576 26.6
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 6.4e-27 127.1 103 64.1
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 7.8e-25 120.2 73 69.9
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.9e-23 115.5 600 24.5
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 4.7e-22 110.9 96 60.4
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 1.5e-20 105.9 118 52.5
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 8.4e-19 100.1 76 69.7
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 2.1e-17 95.5 177 48.6
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 6.0e-17 94.0 200 45.5
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 1.1e-15 89.7 203 44.3
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.5e-15 89.4 122 48.4
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 5.6e-15 87.4 87 55.2
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 1.6e-14 85.9 55 72.7
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.8e-11 74.7 63 54.0
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 3.2e-10 71.6 67 59.7
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 7.1e-10 70.5 65 53.8
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 1.5e-07 62.8 92 45.7
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 1.9e-07 62.4 61 50.8
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.9e-07 62.4 61 50.8
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.9e-07 62.4 58 51.7
arahy.Tifrunner.gnm1.ann1.3YA0AF Arachis hypogaea HOM05D004092 ORTHO05D005448 7.4e-07 60.5 49 67.3
FAN03G1151 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.6e-06 59.3 69 49.3
FAN14G4793 Fragaria x ananassa HOM05D004092 ORTHO05D016651 2.8e-06 58.5 45 60.0
FAN24G0029 Fragaria x ananassa HOM05D004092 ORTHO05D016651 8.1e-06 57.0 45 60.0


User provided reference genes

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