Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G061700 Carya illinoinensis HOM05D007250 ORTHO05D009162 4.5e-155 551.2 275 100.0
Haze_07815 Corylus avellana HOM05D007250 ORTHO05D009162 1.1e-116 423.7 275 76.0
QL04p088943 Quercus lobata HOM05D007250 ORTHO05D009162 2.9e-101 372.5 276 69.6
QL04p088484 Quercus lobata HOM05D007250 ORTHO05D009162 4.1e-100 368.6 276 69.2
Glyma.15G260800 Glycine max HOM05D007250 ORTHO05D009162 7.5e-86 321.2 287 57.1
Lj3g0020784 Lotus japonicus HOM05D007250 ORTHO05D009162 1.9e-84 316.6 282 57.1
Gorai.013G142400 Gossypium raimondii HOM05D007250 ORTHO05D009162 5.4e-84 315.1 277 57.8
CANSAT56G4154 Cannabis sativa HOM05D007250 ORTHO05D009162 7.1e-84 314.7 278 58.3
Potri.007G069400 Populus trichocarpa HOM05D007250 ORTHO05D009162 2.7e-83 312.8 252 61.5
Manes.06G175800 Manihot esculenta HOM05D007250 ORTHO05D009162 3.5e-83 312.4 291 55.7
Phvul.005G050100 Phaseolus vulgaris HOM05D007250 ORTHO05D009162 3.5e-83 312.4 281 56.9
Lalb_Chr25g0284601 Lupinus albus HOM05D007250 ORTHO05D009162 4.6e-83 312.0 270 58.1
Medtr1g060720 Medicago truncatula HOM05D007250 ORTHO05D009162 1.0e-82 310.8 237 63.7
ClCG02G018630 Citrullus lanatus HOM05D007250 ORTHO05D009162 3.0e-82 309.3 278 59.4
Duzib213G0161 Durio zibethinus HOM05D007250 ORTHO05D009162 2.5e-81 306.2 277 57.0
Sed0012120 Sechium edule HOM05D007250 ORTHO05D009162 4.3e-81 305.4 276 58.7
Ca_03591_v3 Cicer arietinum L. HOM05D007250 ORTHO05D009162 5.6e-81 305.1 291 55.3
Sabra07G0056900 Salix brachista HOM05D007250 ORTHO05D009162 1.2e-80 303.9 238 60.9
Gohir.D13G127200 Gossypium hirsutum HOM05D007250 ORTHO05D009162 2.8e-80 302.8 203 69.5
TWI38G0063 Tripterygium wilfordii HOM05D007250 ORTHO05D009162 2.8e-80 302.8 243 58.4
Ciclev10005586m.g Citrus clementina HOM05D007250 ORTHO05D009162 8.1e-80 301.2 277 53.8
CSS0017513 Camellia sinensis var. sinensis HOM05D007250 ORTHO05D009162 1.1e-79 300.8 209 66.5
Thecc.07G179900 Theobroma cacao HOM05D007250 ORTHO05D009162 1.1e-79 300.8 237 60.8
GSVIVG01036780001 Vitis vinifera HOM05D007250 ORTHO05D009162 1.4e-79 300.4 210 66.7
MD05G1040700 Malus domestica HOM05D007250 ORTHO05D009162 6.8e-79 298.1 247 59.5
Hma1.2p1_0151F.1_g067310 Hydrangea macrophylla HOM05D007250 ORTHO05D009162 1.5e-78 297.0 205 67.8
Nitab4.5_0003777g0030 Nicotiana tabacum HOM05D007250 ORTHO05D009162 2.6e-78 296.2 242 58.7
vmacro11701 Vaccinium macrocarpon HOM05D007250 ORTHO05D009162 9.9e-78 294.3 239 59.8
Eucgr.F04459 Eucalyptus grandis HOM05D007250 ORTHO05D009162 1.7e-77 293.5 204 66.7
Carub.0001s1619 Capsella rubella HOM05D007250 ORTHO05D009162 2.2e-77 293.1 206 63.6
Actinidia12769 Actinidia chinensis HOM05D007250 ORTHO05D000003 2.9e-77 292.7 258 56.6
Lsat_1_v5_gn_7_75520 Lactuca sativa HOM05D007250 ORTHO05D009162 4.9e-77 292.0 261 55.9
RcHm_v2.0_Chr6g0272151 Rosa chinensis HOM05D007250 ORTHO05D009162 6.4e-77 291.6 232 60.3
CsaV3_6G013550 Cucumis sativus L. HOM05D007250 ORTHO05D009162 1.1e-76 290.8 263 57.8
Nn3g20174 Nelumbo nucifera HOM05D007250 ORTHO05D009162 3.2e-76 289.3 252 55.6
PSO541G5100 Papaver somniferum HOM05D007250 ORTHO05D009162 4.1e-76 288.9 210 64.3
A09p60900 Brassica napus HOM05D007250 ORTHO05D009162 7.1e-76 288.1 244 57.0
BraA09t41463Z Brassica rapa HOM05D007250 ORTHO05D009162 7.1e-76 288.1 244 57.0
CSS0024774 Camellia sinensis var. sinensis HOM05D007250 ORTHO05D009162 1.2e-75 287.3 203 66.0
Solyc10g005540.4 Solanum lycopersicum HOM05D007250 ORTHO05D009162 1.2e-75 287.3 254 56.3
Aa31LG7G990 Aethionema arabicum HOM05D007250 ORTHO05D009162 1.6e-75 287.0 224 59.8
MSTRG.16100 Avicennia marina HOM05D007250 ORTHO05D009162 1.6e-75 287.0 265 54.0
AUR62018167 Chenopodium quinoa HOM05D007250 ORTHO05D009162 2.1e-75 286.6 241 57.7
Nitab4.5_0008957g0010 Nicotiana tabacum HOM05D007250 ORTHO05D009162 2.1e-75 286.6 258 55.4
AT1G16445 Arabidopsis thaliana HOM05D007250 ORTHO05D009162 3.5e-75 285.8 239 56.9
Sopen10g001520 Solanum pennellii HOM05D007250 ORTHO05D009162 3.5e-75 285.8 254 56.3
AL1G28580 Arabidopsis lyrata HOM05D007250 ORTHO05D009162 4.6e-75 285.4 239 58.2
C08p44490 Brassica napus HOM05D007250 ORTHO05D009162 4.6e-75 285.4 244 57.0
Dinv19589 Davidia involucrata HOM05D007250 ORTHO05D009162 6.0e-75 285.0 195 68.7
Rhsim06G0242100 Rhododendron simsii HOM05D007250 ORTHO05D009162 1.0e-74 284.3 272 53.7
Sp1g14600 Schrenkiella parvula HOM05D007250 ORTHO05D009162 1.0e-74 284.3 231 58.4
CARHR016920 Cardamine hirsuta HOM05D007250 ORTHO05D009162 1.7e-74 283.5 238 56.7
Thhalv10008448m.g Eutrema salsugineum HOM05D007250 ORTHO05D009162 3.0e-74 282.7 208 60.1
FvH4_2g12161 Fragaria vesca HOM05D007250 ORTHO05D009162 3.0e-74 282.7 223 59.6
Lj2A15T78 Lonicera japonica HOM05D007250 ORTHO05D009162 3.0e-74 282.7 202 64.4
PGSC0003DMG400011276 Solanum tuberosum HOM05D007250 ORTHO05D009162 3.0e-74 282.7 254 55.9
Oeu034977.1 Olea europaea HOM05D007250 ORTHO05D009162 3.3e-73 279.3 264 53.0
CAN.G492.76 Capsicum annuum HOM05D007250 ORTHO05D009162 4.3e-73 278.9 282 53.5
HanXRQChr05g0160551 Helianthus annuus HOM05D007250 ORTHO05D009162 5.6e-73 278.5 210 59.0
BolC8t51991H Brassica oleracea HOM05D007250 ORTHO05D009162 9.6e-73 277.7 243 55.6
Peaxi162Scf00114g00116 Petunia axillaris HOM05D007250 ORTHO05D009162 2.4e-71 273.1 248 55.2
Atru.chr1.107 Acer truncatum HOM05D007250 ORTHO05D009162 4.4e-70 268.9 206 62.1
MBI18_g10574_MAGBIO Magnolia biondii HOM05D007250 ORTHO05D009162 4.9e-69 265.4 182 69.2
arahy.Tifrunner.gnm1.ann1.QIZU11 Arachis hypogaea HOM05D007250 ORTHO05D009162 8.4e-69 264.6 182 64.3
ATR0165G048 Amborella trichopoda HOM05D007250 ORTHO05D009162 1.4e-68 263.8 229 53.7
unitig_748.g7850 Utricularia gibba HOM05D007250 ORTHO05D001497 1.4e-68 263.8 207 56.5
Gohir.A13G123300 Gossypium hirsutum HOM05D007250 ORTHO05D009162 4.2e-68 262.3 304 51.0
Os05g0511700 Oryza sativa ssp. japonica HOM05D007250 ORTHO05D009162 7.1e-68 261.5 232 52.2
AUR62042431 Chenopodium quinoa HOM05D007250 ORTHO05D009162 3.9e-66 255.8 224 55.4
Zm00001eb292510 Zea mays HOM05D007250 ORTHO05D009162 5.1e-66 255.4 205 57.1
Psat1g013800 Pisum sativum HOM05D007250 ORTHO05D009162 4.3e-65 252.3 207 60.9
CDE01G0022 Ceratophyllum demersum HOM05D007250 ORTHO05D009162 1.3e-64 250.8 257 49.4
arahy.Tifrunner.gnm1.ann1.3NS56Y Arachis hypogaea HOM05D007250 ORTHO05D009162 2.8e-64 249.6 217 58.5
COL.COLO4_32252 Corchorus olitorius HOM05D007250 ORTHO05D009162 9.0e-63 244.6 206 59.7
Prupe.8G055300 Prunus persica HOM05D007250 ORTHO05D009162 1.2e-62 244.2 238 55.5
HPP92_000965 Vanilla planifolia HOM05D007250 ORTHO05D009162 3.4e-62 242.7 217 52.1
TAR627G0140 Trochodendron aralioides HOM05D007250 ORTHO05D009162 1.7e-61 240.4 242 53.3
Aqoxy6G01374 Aquilegia oxysepala HOM05D007250 ORTHO05D009162 8.4e-61 238.0 212 54.7
Hund20100 Selenicereus undatus HOM05D007250 ORTHO05D009162 1.2e-59 234.2 184 59.2
FAN20G1272 Fragaria x ananassa HOM05D007250 ORTHO05D009162 2.5e-57 226.5 219 53.9
SGA_v2.0_scaffold7G03608 Striga asiatica HOM05D001395 ORTHO05D002039 2.8e-56 223.0 220 51.4
Cpa.g.sc34.15 Carica papaya HOM05D007250 ORTHO05D009162 2.9e-53 213.0 184 59.8
Pp3c16_19260 Physcomitrium patens HOM05D007250 ORTHO05D009162 2.9e-53 213.0 239 45.2
EL10Ac2g03263 Beta vulgaris HOM05D007250 ORTHO05D009162 7.1e-52 208.4 273 42.5
Mapoly0102s0005 Marchantia polymorpha HOM05D007250 ORTHO05D009162 4.6e-51 205.7 285 41.4
Hma1.2p1_0151F.1_g067320 Hydrangea macrophylla HOM05D007250 ORTHO05D009162 6.0e-51 205.3 140 69.3
PGR031G0704 Punica granatum HOM05D007250 ORTHO05D009162 5.6e-49 198.7 222 43.7
AagrBONN_evm.TU.Sc2ySwM_117.37 Anthoceros agrestis HOM05D007250 ORTHO05D009162 3.8e-45 186.0 260 41.9
SMO141G0022 Selaginella moellendorffii HOM05D007250 ORTHO05D009162 1.1e-44 184.5 185 45.9
Cc05_g16330 Coffea canephora HOM05D007250 ORTHO05D009162 6.7e-42 175.3 141 58.2
Hma1.2p1_0616F.1_g189960 Hydrangea macrophylla HOM05D007250 ORTHO05D009162 4.6e-35 152.5 154 52.6
Migut.M01530 Erythranthe guttata HOM05D007250 ORTHO05D009162 5.1e-34 149.1 110 59.1
QL03p068942 Quercus lobata HOM05D007250 ORTHO05D009162 3.4e-30 136.3 209 42.1
FAN24G3506 Fragaria x ananassa HOM05D007250 ORTHO05D009162 2.2e-29 133.7 91 67.0
MCO03G414 Micromonas commoda HOM05D007250 ORTHO05D009162 2.2e-29 133.7 203 35.5
SEGI_10655 Sequoiadendron giganteum HOM05D007250 ORTHO05D009162 2.7e-27 126.7 105 54.3
CBR_g32272 Chara braunii HOM05D007250 ORTHO05D009162 1.0e-26 124.8 146 41.8
Migut.M01529 Erythranthe guttata HOM05D007250 ORTHO05D009162 3.3e-25 119.8 89 64.0
Cre12.g517550 Chlamydomonas reinhardtii HOM05D007250 ORTHO05D009162 4.3e-25 119.4 166 39.8
CSS0048664 Camellia sinensis var. sinensis HOM05D007250 ORTHO05D009162 2.2e-21 107.1 107 50.5
Sc10g0008800 Simmondsia chinensis HOM05D007250 ORTHO05D009162 7.2e-20 102.1 80 56.2
PRCOL_00005754 Prasinoderma coloniale HOM05D007250 ORTHO05D009162 3.9e-18 96.3 191 33.5
QL04p088027 Quercus lobata HOM05D037085 ORTHO05D009162 2.7e-11 73.6 57 59.6
Mapoly0062s0100 Marchantia polymorpha HOM05D007250 ORTHO05D009162 1.5e-09 67.8 121 33.9
MELO3C019639.2 Cucumis melo HOM05D007250 ORTHO05D009162 7.5e-09 65.5 41 63.4
QL04p088276 Quercus lobata HOM05D037085 ORTHO05D009162 4.8e-08 62.8 44 68.2
VMungo1080G0363 Vigna mungo HOM05D007250 ORTHO05D009162 2.4e-07 60.5 41 51.2
QL04p088222 Quercus lobata HOM05D007250 ORTHO05D009162 1.2e-06 58.2 39 74.4


User provided reference genes

Program Settings