Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G048800 Carya illinoinensis HOM05D007878 ORTHO05D010022 2.5e-277 958.4 566 100.0
CiPaw.11G048500 Carya illinoinensis HOM05D007878 ORTHO05D010022 8.5e-193 677.6 582 73.5
Prupe.5G199300 Prunus persica HOM05D007878 ORTHO05D010022 1.1e-120 438.0 610 51.8
Cfa019282 Carpinus fangiana HOM05D007878 ORTHO05D010022 1.1e-115 421.4 596 49.8
Duzib084G0698 Durio zibethinus HOM05D007878 ORTHO05D010022 7.9e-114 415.2 594 46.8
FAN18G1316 Fragaria x ananassa HOM05D007878 ORTHO05D010022 2.8e-111 406.8 611 49.4
Potri.015G061500 Populus trichocarpa HOM05D007878 ORTHO05D010022 1.4e-110 404.4 543 48.3
Dinv38757 Davidia involucrata HOM05D007878 ORTHO05D010022 1.3e-108 397.9 595 50.9
TAR374G1173 Trochodendron aralioides HOM05D007878 ORTHO05D010022 8.5e-108 395.2 600 46.2
Thecc.03G095300 Theobroma cacao HOM05D007878 ORTHO05D010022 2.7e-106 390.2 596 49.0
Atru.chr9.783 Acer truncatum HOM05D007878 ORTHO05D010022 3.6e-106 389.8 576 44.6
FAN13G2185 Fragaria x ananassa HOM05D007878 ORTHO05D010022 3.7e-103 379.8 610 45.4
FvH4_5g14430 Fragaria vesca HOM05D007878 ORTHO05D010022 1.8e-102 377.5 616 49.2
MD14G1206000 Malus domestica HOM05D007878 ORTHO05D010022 9.0e-102 375.2 586 47.6
FAN08G0929 Fragaria x ananassa HOM05D007878 ORTHO05D010022 1.0e-100 371.7 602 44.2
RcHm_v2.0_Chr7g0182231 Rosa chinensis HOM05D007878 ORTHO05D010022 8.5e-100 368.6 606 44.1
QL10p018347 Quercus lobata HOM05D007878 ORTHO05D010022 3.6e-98 363.2 526 52.7
Aqoxy3G03537 Aquilegia oxysepala HOM05D007878 ORTHO05D010022 5.1e-97 359.4 602 41.4
PGR083G0831 Punica granatum HOM05D007878 ORTHO05D010022 8.2e-95 352.1 604 43.7
Actinidia04859 Actinidia chinensis HOM05D007878 ORTHO05D010022 1.1e-94 351.7 586 42.3
Manes.14G082500 Manihot esculenta HOM05D007878 ORTHO05D010022 1.4e-94 351.3 596 46.6
Nn4g23313 Nelumbo nucifera HOM05D007878 ORTHO05D010022 2.4e-94 350.5 595 42.2
TWI60G1109 Tripterygium wilfordii HOM05D007878 ORTHO05D010022 2.7e-90 337.0 594 40.1
COL.COLO4_38427 Corchorus olitorius HOM05D007878 ORTHO05D010022 1.8e-89 334.3 591 47.4
Actinidia09234 Actinidia chinensis HOM05D007878 ORTHO05D010022 8.2e-87 325.5 590 40.7
GSVIVG01007952001 Vitis vinifera HOM05D007878 ORTHO05D010022 8.5e-84 315.5 478 51.0
Sed0013205 Sechium edule HOM05D007878 ORTHO05D010022 2.5e-83 313.9 578 40.3
Manes.06G088500 Manihot esculenta HOM05D007878 ORTHO05D010022 9.4e-83 312.0 605 42.6
Cc04_g14870 Coffea canephora HOM05D007878 ORTHO05D010022 2.1e-82 310.8 599 38.4
Gohir.A03G068300 Gossypium hirsutum HOM05D007878 ORTHO05D010022 4.7e-82 309.7 575 38.1
MBI16_g14990_MAGBIO Magnolia biondii HOM05D007878 ORTHO05D010022 4.7e-82 309.7 575 41.4
Gohir.D03G094900 Gossypium hirsutum HOM05D007878 ORTHO05D010022 4.0e-81 306.6 575 38.3
Ciclev10024608m.g Citrus clementina HOM05D007878 ORTHO05D010022 2.2e-79 300.8 566 39.9
Haze_07666 Corylus avellana HOM05D007878 ORTHO05D010022 1.0e-76 292.0 521 41.5
Oeu031812.2 Olea europaea HOM05D007878 ORTHO05D010022 6.5e-76 289.3 594 37.9
CAN.G479.49 Capsicum annuum HOM05D007878 ORTHO05D010022 1.6e-74 284.6 592 37.8
ClCG06G015920 Citrullus lanatus HOM05D007878 ORTHO05D010022 1.5e-72 278.1 578 38.9
DCAR_016585 Daucus carota HOM05D007878 ORTHO05D010022 4.4e-72 276.6 578 35.6
MD06G1198500 Malus domestica HOM05D007878 ORTHO05D010022 1.4e-70 271.6 580 41.9
PSO063G3897 Papaver somniferum HOM05D007878 ORTHO05D010022 4.1e-70 270.0 577 37.1
Gorai.003G099100 Gossypium raimondii HOM05D007878 ORTHO05D010022 7.0e-70 269.2 521 37.2
Nitab4.5_0002756g0040 Nicotiana tabacum HOM05D007878 ORTHO05D010022 1.5e-67 261.5 591 39.1
Peaxi162Scf00274g00029 Petunia axillaris HOM05D007878 ORTHO05D010022 3.6e-66 256.9 574 36.2
Phvul.003G187300 Phaseolus vulgaris HOM05D007878 ORTHO05D010022 1.0e-65 255.4 569 36.6
MELO3C017199.2 Cucumis melo HOM05D007878 ORTHO05D010022 3.0e-65 253.8 583 36.0
Eucgr.B00555 Eucalyptus grandis HOM05D007878 ORTHO05D010022 8.8e-65 252.3 483 43.7
PGSC0003DMG400024662 Solanum tuberosum HOM05D007878 ORTHO05D010022 1.2e-64 251.9 593 34.9
Nitab4.5_0001211g0090 Nicotiana tabacum HOM05D007878 ORTHO05D010022 3.4e-64 250.4 536 39.9
Nn3g17364 Nelumbo nucifera HOM05D007878 ORTHO05D010022 7.5e-64 249.2 414 47.3
CsaV3_1G002630 Cucumis sativus L. HOM05D007878 ORTHO05D010022 3.1e-62 243.8 583 36.2
Sopen03g034610 Solanum pennellii HOM05D007878 ORTHO05D010022 1.6e-61 241.5 594 34.3
Solyc03g115620.2 Solanum lycopersicum HOM05D007878 ORTHO05D010022 4.5e-61 240.0 597 35.2
Glyma.17G103300 Glycine max HOM05D007878 ORTHO05D010022 1.4e-57 228.4 574 35.2
Oeu046990.1 Olea europaea HOM05D007878 ORTHO05D010022 2.6e-56 224.2 539 39.1
Medtr4g109150 Medicago truncatula HOM05D007878 ORTHO05D010022 5.7e-56 223.0 571 34.7
Ca_21797_v3 Cicer arietinum L. HOM05D007878 ORTHO05D010022 5.4e-54 216.5 524 34.4
CANSAT80G1712 Cannabis sativa HOM05D007878 ORTHO05D010022 1.6e-53 214.9 582 34.4
Lj4g0012809 Lotus japonicus HOM05D007878 ORTHO05D010022 5.9e-53 213.0 579 32.6
Cpa.g.sc13.307 Carica papaya HOM05D007878 ORTHO05D010022 3.9e-52 210.3 539 33.0
CSS0029238 Camellia sinensis var. sinensis HOM05D000957 ORTHO05D000754 2.4e-46 191.0 497 35.0
Oeu052466.1 Olea europaea HOM05D007878 ORTHO05D010022 9.2e-46 189.1 565 31.5
Oeu052465.1 Olea europaea HOM05D007878 ORTHO05D010022 1.6e-45 188.3 565 31.5
Oeu047269.3 Olea europaea HOM05D007878 ORTHO05D010022 2.0e-45 188.0 538 34.2
arahy.Tifrunner.gnm1.ann1.3W98EY Arachis hypogaea HOM05D007878 ORTHO05D010022 2.7e-45 187.6 575 31.5
ECA246G4297 Erigeron canadensis HOM05D007878 ORTHO05D010022 4.3e-43 180.3 528 32.4
TPR.G1999 Trifolium pratense HOM05D007878 ORTHO05D010022 7.3e-43 179.5 571 34.7
Migut.I00229 Erythranthe guttata HOM05D007878 ORTHO05D010022 1.2e-42 178.7 575 30.1
HanXRQChr05g0157141 Helianthus annuus HOM05D007878 ORTHO05D010022 2.9e-39 167.5 516 31.0
ATR0730G174 Amborella trichopoda HOM05D007878 ORTHO05D010022 4.9e-39 166.8 605 33.1
arahy.Tifrunner.gnm1.ann1.QT4JJ4 Arachis hypogaea HOM05D007878 ORTHO05D010022 6.6e-36 156.4 510 31.2
Atru.chr9.308 Acer truncatum HOM05D007878 ORTHO05D010022 6.2e-34 149.8 184 50.0
Psat4g049000 Pisum sativum HOM05D007878 ORTHO05D010022 6.2e-34 149.8 571 28.9
DCAR_021514 Daucus carota HOM05D007878 ORTHO05D010022 3.9e-28 130.6 352 33.0
DCAR_026030 Daucus carota HOM05D000094 ORTHO05D003883 7.3e-27 126.3 766 23.5
MSTRG.22991 Avicennia marina HOM05D007878 ORTHO05D010022 3.5e-21 107.5 152 48.7
Lsat_1_v5_gn_5_21161 Lactuca sativa HOM05D007878 ORTHO05D010022 1.5e-16 92.0 387 28.7
arahy.Tifrunner.gnm1.ann1.0CJ0KN Arachis hypogaea HOM05D007878 ORTHO05D010022 3.5e-13 80.9 242 32.2
arahy.Tifrunner.gnm1.ann1.H3BYSM Arachis hypogaea HOM05D007878 ORTHO05D010022 3.5e-13 80.9 240 32.9
CDE02G3428 Ceratophyllum demersum HOM05D001827 ORTHO05D001790 2.3e-12 78.2 595 22.4
SEGI_39497 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 3.3e-11 74.3 590 23.6
Sabra15G0086500 Salix brachista HOM05D007878 ORTHO05D010022 1.3e-10 72.4 130 41.5
Aa31LG5G11980 Aethionema arabicum HOM05D001812 ORTHO05D001874 1.1e-09 69.3 619 24.2
SEGI_16968 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 1.8e-09 68.6 638 23.7
Glyma.02G301400 Glycine max HOM05D001827 ORTHO05D001790 3.1e-09 67.8 599 23.4
Nitab4.5_0011439g0010 Nicotiana tabacum HOM05D004905 ORTHO05D005456 9.0e-09 66.2 432 24.1
Zm00001eb400500 Zea mays HOM05D007878 ORTHO05D010022 2.6e-08 64.7 265 24.5
Aa31LG3G11780 Aethionema arabicum HOM05D001827 ORTHO05D001790 5.8e-08 63.5 612 23.4
Eucgr.F02039 Eucalyptus grandis HOM05D001827 ORTHO05D001790 5.8e-08 63.5 644 22.5
Medtr5g096080 Medicago truncatula HOM05D001827 ORTHO05D001790 5.8e-08 63.5 598 22.1
QL05p067335 Quercus lobata HOM05D001827 ORTHO05D001790 1.3e-07 62.4 573 22.2
SEGI_06346 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 1.3e-07 62.4 466 23.6
Medtr3g007920 Medicago truncatula HOM05D001827 ORTHO05D001790 2.9e-07 61.2 598 22.4
Haze_07028 Corylus avellana HOM05D001827 ORTHO05D001790 1.1e-06 59.3 567 21.0
Nitab4.5_0000753g0160 Nicotiana tabacum HOM05D004905 ORTHO05D005456 1.9e-06 58.5 456 23.9
QL05p066984 Quercus lobata HOM05D001827 ORTHO05D001790 3.2e-06 57.8 570 23.3
THA.LOC104811675 Tarenaya hassleriana HOM05D001827 ORTHO05D001790 4.2e-06 57.4 622 24.8
Solyc02g086350.3 Solanum lycopersicum HOM05D004905 ORTHO05D005456 7.1e-06 56.6 552 21.7


User provided reference genes

Program Settings