Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G045300 Carya illinoinensis HOM05D007106 ORTHO05D007770 2.8e-45 184.9 91 100.0
Cfa018934 Carpinus fangiana HOM05D007106 ORTHO05D007770 3.7e-29 131.3 95 70.5
CiPaw.12G013000 Carya illinoinensis HOM05D007106 ORTHO05D007770 6.0e-24 114.0 91 63.7
QL10p017125 Quercus lobata HOM05D007106 ORTHO05D007770 1.8e-23 112.5 84 69.0
COL.COLO4_08636 Corchorus olitorius HOM05D007106 ORTHO05D007770 5.7e-22 107.5 94 63.8
Duzib205G0867 Durio zibethinus HOM05D007106 ORTHO05D007770 2.4e-20 102.1 95 61.1
MD14G1201500 Malus domestica HOM05D007106 ORTHO05D007770 2.6e-19 98.6 94 57.4
Thecc.03G089800 Theobroma cacao HOM05D007106 ORTHO05D007770 2.6e-19 98.6 92 62.0
Prupe.5G194500 Prunus persica HOM05D007106 ORTHO05D007770 1.0e-18 96.7 93 61.3
Manes.06G091700 Manihot esculenta HOM05D007106 ORTHO05D007770 8.5e-18 93.6 95 54.7
Dinv38719 Davidia involucrata HOM05D007106 ORTHO05D007770 1.2e-16 89.7 98 52.0
Atru.chr9.252 Acer truncatum HOM05D007106 ORTHO05D007770 1.6e-16 89.4 84 57.1
CSS0012235 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 1.6e-16 89.4 94 53.2
CSS0040002 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 1.6e-16 89.4 94 53.2
Oeu047292.1 Olea europaea HOM05D007106 ORTHO05D007770 2.7e-16 88.6 97 54.6
RcHm_v2.0_Chr7g0181551 Rosa chinensis HOM05D007106 ORTHO05D007770 2.7e-16 88.6 94 55.3
TAR374G1315 Trochodendron aralioides HOM05D007106 ORTHO05D007770 6.1e-16 87.4 88 54.5
vmacro17537 Vaccinium macrocarpon HOM05D007106 ORTHO05D007770 2.3e-15 85.5 96 55.2
Gohir.D07G070600 Gossypium hirsutum HOM05D007106 ORTHO05D007770 6.7e-15 84.0 94 55.3
Gorai.001G074500 Gossypium raimondii HOM05D007106 ORTHO05D007770 6.7e-15 84.0 94 55.3
Manes.14G078900 Manihot esculenta HOM05D007106 ORTHO05D007770 1.1e-14 83.2 92 51.1
Actinidia35002 Actinidia chinensis HOM05D007106 ORTHO05D007770 1.5e-14 82.8 87 54.0
FAN08G1525 Fragaria x ananassa HOM05D007106 ORTHO05D007770 1.9e-14 82.4 92 51.1
Gohir.A03G067200 Gossypium hirsutum HOM05D007106 ORTHO05D007770 1.9e-14 82.4 83 56.6
Gohir.D03G093700 Gossypium hirsutum HOM05D007106 ORTHO05D007770 2.5e-14 82.0 83 56.6
Gorai.003G097700 Gossypium raimondii HOM05D007106 ORTHO05D007770 2.5e-14 82.0 83 56.6
Cpa.g.sc423.1 Carica papaya HOM05D007106 ORTHO05D007770 4.3e-14 81.3 94 57.4
Ciclev10022899m.g Citrus clementina HOM05D007106 ORTHO05D007770 5.7e-14 80.9 91 56.0
Gohir.A07G066100 Gossypium hirsutum HOM05D007106 ORTHO05D007770 5.7e-14 80.9 94 54.3
FvH4_5g14840 Fragaria vesca HOM05D007106 ORTHO05D007770 7.4e-14 80.5 92 52.2
FAN18G2192 Fragaria x ananassa HOM05D007106 ORTHO05D007770 7.4e-14 80.5 92 52.2
MD06G1194400 Malus domestica HOM05D007106 ORTHO05D007770 9.7e-14 80.1 83 55.4
Psat4g050160 Pisum sativum HOM05D007106 ORTHO05D007770 1.3e-13 79.7 87 55.2
Glyma.17G100900 Glycine max HOM05D007106 ORTHO05D007770 1.7e-13 79.3 86 54.7
Dinv16657 Davidia involucrata HOM05D007106 ORTHO05D007770 2.2e-13 79.0 84 51.2
Actinidia37624 Actinidia chinensis HOM05D007106 ORTHO05D007770 2.8e-13 78.6 83 55.4
Hund02644 Selenicereus undatus HOM05D007106 ORTHO05D007770 3.7e-13 78.2 92 48.9
Actinidia19038 Actinidia chinensis HOM05D007106 ORTHO05D007770 4.8e-13 77.8 87 49.4
CsaV3_1G005530 Cucumis sativus L. HOM05D007106 ORTHO05D007770 4.8e-13 77.8 94 51.1
GSVIVG01007993001 Vitis vinifera HOM05D007106 ORTHO05D007770 8.2e-13 77.0 83 56.6
Hma1.2p1_1936F.1_g308220 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 1.1e-12 76.6 85 51.8
Hma1.2p1_2516F.1_g323695 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 1.1e-12 76.6 85 51.8
Nn3g17263 Nelumbo nucifera HOM05D007106 ORTHO05D007770 1.8e-12 75.9 87 50.6
Actinidia04893 Actinidia chinensis HOM05D007106 ORTHO05D007770 4.1e-12 74.7 84 54.8
Sed0002642 Sechium edule HOM05D007106 ORTHO05D007770 4.1e-12 74.7 96 53.1
Sed0016719 Sechium edule HOM05D007106 ORTHO05D007770 6.9e-12 73.9 88 54.5
Haze_07318 Corylus avellana HOM05D007106 ORTHO05D007770 9.1e-12 73.6 57 59.6
Eucgr.K02478 Eucalyptus grandis HOM05D007106 ORTHO05D007770 9.1e-12 73.6 95 48.4
CANSAT80G2807 Cannabis sativa HOM05D007106 ORTHO05D007770 1.2e-11 73.2 101 48.5
Phvul.009G186700 Phaseolus vulgaris HOM05D007106 ORTHO05D007770 2.6e-11 72.0 82 48.8
TWI15G1028 Tripterygium wilfordii HOM05D007106 ORTHO05D007770 3.4e-11 71.6 101 49.5
Cc04_g16540 Coffea canephora HOM05D007106 ORTHO05D007770 4.5e-11 71.2 85 54.1
MELO3C001986.2 Cucumis melo HOM05D007106 ORTHO05D007770 4.5e-11 71.2 94 48.9
Phvul.003G189400 Phaseolus vulgaris HOM05D007106 ORTHO05D007770 4.5e-11 71.2 88 48.9
Glyma.05G026000 Glycine max HOM05D007106 ORTHO05D007770 5.9e-11 70.9 85 51.8
Lj4g0015417 Lotus japonicus HOM05D007106 ORTHO05D007770 1.0e-10 70.1 86 50.0
TAR622G1352 Trochodendron aralioides HOM05D007106 ORTHO05D007770 3.8e-10 68.2 77 49.4
Lj1g0012300 Lotus japonicus HOM05D007106 ORTHO05D007770 5.0e-10 67.8 82 47.6
Nitab4.5_0006000g0100 Nicotiana tabacum HOM05D007106 ORTHO05D007770 6.5e-10 67.4 96 46.9
PGR083G1166 Punica granatum HOM05D007106 ORTHO05D007770 6.5e-10 67.4 91 50.5
Rhsim12G0155900 Rhododendron simsii HOM05D007106 ORTHO05D007770 8.5e-10 67.0 96 45.8
TAR371G0193 Trochodendron aralioides HOM05D007106 ORTHO05D007770 8.5e-10 67.0 85 48.2
ClCG04G012220 Citrullus lanatus HOM05D007106 ORTHO05D007770 1.4e-09 66.2 89 50.6
Glyma.06G194600 Glycine max HOM05D007106 ORTHO05D007770 1.9e-09 65.9 90 46.7
SalBow7G1857 Salvia bowleyana HOM05D007106 ORTHO05D007770 2.5e-09 65.5 93 44.1
THA.LOC104821419 Tarenaya hassleriana HOM05D012999 ORTHO05D007770 2.5e-09 65.5 96 40.6
EL10Ac5g11028 Beta vulgaris HOM05D007106 ORTHO05D007770 3.2e-09 65.1 96 45.8
Peaxi162Scf00274g00521 Petunia axillaris HOM05D007106 ORTHO05D007770 7.2e-09 63.9 99 42.4
Glyma.04G168400 Glycine max HOM05D007106 ORTHO05D007770 1.2e-08 63.2 82 45.1
PGSC0003DMG400019989 Solanum tuberosum HOM05D007106 ORTHO05D007770 1.2e-08 63.2 87 44.8
Psat5g199960 Pisum sativum HOM05D007106 ORTHO05D007770 2.1e-08 62.4 90 42.2
Potri.015G062300 Populus trichocarpa HOM05D007106 ORTHO05D007770 2.1e-08 62.4 97 44.3
CSS0008414 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 2.7e-08 62.0 81 48.1
Eucgr.B00514 Eucalyptus grandis HOM05D007106 ORTHO05D007770 3.6e-08 61.6 82 46.3
Solyc07g150120.1 Solanum lycopersicum HOM05D007106 ORTHO05D007770 3.6e-08 61.6 82 41.5
Haze_12000 Corylus avellana HOM05D007106 ORTHO05D007770 4.7e-08 61.2 84 40.5
QL03p068707 Quercus lobata HOM05D007106 ORTHO05D007770 6.1e-08 60.8 78 44.9
Nitab4.5_0008269g0020 Nicotiana tabacum HOM05D007106 ORTHO05D007770 7.9e-08 60.5 81 42.0
Solyc03g115950.3 Solanum lycopersicum HOM05D007106 ORTHO05D007770 7.9e-08 60.5 101 42.6
Nitab4.5_0000121g0170 Nicotiana tabacum HOM05D007106 ORTHO05D007770 1.0e-07 60.1 86 44.2
Sopen06g004820 Solanum pennellii HOM05D007106 ORTHO05D007770 1.0e-07 60.1 78 43.6
Oeu022764.1 Olea europaea HOM05D007106 ORTHO05D007770 1.8e-07 59.3 91 44.0
TPR.G9262 Trifolium pratense HOM05D007106 ORTHO05D007770 2.3e-07 58.9 89 43.8
Sopen12g025630 Solanum pennellii HOM05D007106 ORTHO05D007770 3.0e-07 58.5 82 40.2
vmacro16544 Vaccinium macrocarpon HOM05D007106 ORTHO05D007770 3.0e-07 58.5 81 45.7
Nitab4.5_0001128g0100 Nicotiana tabacum HOM05D007106 ORTHO05D007770 3.9e-07 58.2 98 40.8
Peaxi162Scf01256g00221 Petunia axillaris HOM05D007106 ORTHO05D007770 3.9e-07 58.2 84 44.0
PGSC0003DMG400019509 Solanum tuberosum HOM05D007106 ORTHO05D007770 5.1e-07 57.8 100 42.0
Lalb_Chr23g0273781 Lupinus albus HOM05D007106 ORTHO05D007770 6.7e-07 57.4 89 43.8
Medtr3g435530 Medicago truncatula HOM05D007106 ORTHO05D007770 8.8e-07 57.0 90 38.9
Ah.11g048350 Amaranthus hybridus HOM05D007106 ORTHO05D007770 1.5e-06 56.2 97 42.3
THA.LOC104812541 Tarenaya hassleriana HOM05D007106 ORTHO05D007770 1.5e-06 56.2 82 37.8
TPR.G11889 Trifolium pratense HOM05D007106 ORTHO05D007770 7.4e-06 53.9 91 38.5
arahy.Tifrunner.gnm1.ann1.Y9A4XN Arachis hypogaea HOM05D007106 ORTHO05D007770 9.7e-06 53.5 78 43.6


User provided reference genes

Program Settings