Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G039400 Carya illinoinensis HOM05D002504 ORTHO05D007555 7.7e-214 746.9 380 100.0
Haze_07368 Corylus avellana HOM05D002504 ORTHO05D007555 5.4e-175 617.8 376 83.5
Cfa018981 Carpinus fangiana HOM05D002504 ORTHO05D007555 1.2e-171 606.7 376 82.4
QL10p015753 Quercus lobata HOM05D002504 ORTHO05D007555 8.9e-162 573.9 376 76.6
QL10p005074 Quercus lobata HOM05D002504 ORTHO05D007555 5.4e-159 564.7 376 75.3
Duzib068G0930 Durio zibethinus HOM05D002504 ORTHO05D007555 3.4e-145 518.8 376 67.6
COL.COLO4_05456 Corchorus olitorius HOM05D002504 ORTHO05D007555 1.3e-144 516.9 376 66.5
Manes.14G075600 Manihot esculenta HOM05D002504 ORTHO05D007555 2.1e-142 509.6 376 66.8
RcHm_v2.0_Chr7g0180701 Rosa chinensis HOM05D002504 ORTHO05D007555 1.9e-140 503.1 376 65.4
TWI38G0829 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 1.9e-140 503.1 376 64.4
Thecc.03G080700 Theobroma cacao HOM05D002504 ORTHO05D007555 4.3e-140 501.9 376 66.0
Dinv19925 Davidia involucrata HOM05D002504 ORTHO05D007332 7.3e-140 501.1 378 65.9
Gohir.D11G032900 Gossypium hirsutum HOM05D002504 ORTHO05D007555 6.9e-138 494.6 376 64.6
Cpa.g.sc17.218 Carica papaya HOM05D002504 ORTHO05D007555 1.5e-137 493.4 376 65.7
Ciclev10020527m.g Citrus clementina HOM05D002504 ORTHO05D007555 2.0e-137 493.0 376 66.2
Dinv09821 Davidia involucrata HOM05D002504 ORTHO05D007555 2.6e-137 492.7 378 65.1
Gohir.A11G029531 Gossypium hirsutum HOM05D002504 ORTHO05D007555 2.6e-137 492.7 376 64.6
FAN08G0998 Fragaria x ananassa HOM05D002504 ORTHO05D007555 3.4e-137 492.3 377 63.9
FvH4_5g15370 Fragaria vesca HOM05D002504 ORTHO05D007555 7.6e-137 491.1 377 63.9
Sed0014360 Sechium edule HOM05D002504 ORTHO05D007555 4.9e-136 488.4 377 64.5
FAN04G1481 Fragaria x ananassa HOM05D002504 ORTHO05D007555 6.4e-136 488.0 377 63.4
FAN18G2091 Fragaria x ananassa HOM05D002504 ORTHO05D007555 1.1e-135 487.3 377 63.4
FAN13G2799 Fragaria x ananassa HOM05D002504 ORTHO05D007555 1.4e-135 486.9 377 63.1
ClCG01G016490 Citrullus lanatus HOM05D002504 ORTHO05D007555 5.4e-135 485.0 376 63.3
Gorai.007G035700 Gossypium raimondii HOM05D002504 ORTHO05D007555 7.1e-135 484.6 376 63.3
THA.LOC104808328 Tarenaya hassleriana HOM05D002504 ORTHO05D007555 2.1e-134 483.0 376 62.8
Prupe.5G187600 Prunus persica HOM05D002504 ORTHO05D007555 2.7e-134 482.6 376 63.3
TWI39G0444 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 7.9e-134 481.1 378 62.4
Potri.015G064300 Populus trichocarpa HOM05D002504 ORTHO05D007555 1.8e-133 479.9 378 64.8
Actinidia34980 Actinidia chinensis HOM05D002504 ORTHO05D007555 6.7e-133 478.0 376 63.8
MELO3C007518.2 Cucumis melo HOM05D002504 ORTHO05D007555 4.3e-132 475.3 376 61.7
VMungo1215G2696 Vigna mungo HOM05D002504 ORTHO05D007555 1.6e-131 473.4 376 62.5
Sabra15G0090100 Salix brachista HOM05D002504 ORTHO05D007555 8.1e-131 471.1 378 62.7
CSS0049848 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 1.8e-130 469.9 376 62.2
CSS0041593 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 6.9e-130 468.0 376 62.0
CsaV3_6G042770 Cucumis sativus L. HOM05D002504 ORTHO05D007555 1.5e-129 466.8 376 60.9
Lj4g0008726 Lotus japonicus HOM05D002504 ORTHO05D007555 1.5e-129 466.8 376 63.0
Glyma.17G097600 Glycine max HOM05D002504 ORTHO05D007555 7.6e-129 464.5 376 63.8
Rhsim12G0158700 Rhododendron simsii HOM05D002504 ORTHO05D007555 2.2e-128 463.0 376 62.2
Actinidia19055 Actinidia chinensis HOM05D002504 ORTHO05D007555 2.9e-128 462.6 372 61.8
Atru.BG.192.p Acer truncatum HOM05D002504 ORTHO05D007555 8.4e-128 461.1 342 67.5
Phvul.003G192200 Phaseolus vulgaris HOM05D002504 ORTHO05D007555 2.4e-127 459.5 376 61.4
TPR.G5442 Trifolium pratense HOM05D002504 ORTHO05D007555 2.1e-126 456.4 377 61.3
arahy.Tifrunner.gnm1.ann1.WQI89G Arachis hypogaea HOM05D002504 ORTHO05D007555 2.7e-126 456.1 376 60.9
MD14G1195800 Malus domestica HOM05D002504 ORTHO05D007555 6.0e-126 454.9 378 60.6
arahy.Tifrunner.gnm1.ann1.XHUI7I Arachis hypogaea HOM05D002504 ORTHO05D007555 1.3e-125 453.8 376 60.4
Medtr3g078030 Medicago truncatula HOM05D002504 ORTHO05D007555 3.0e-125 452.6 377 60.7
TAR622G0915 Trochodendron aralioides HOM05D002504 ORTHO05D007555 5.1e-125 451.8 378 60.1
TAR374G0022 Trochodendron aralioides HOM05D002504 ORTHO05D007555 6.7e-125 451.4 376 59.6
arahy.Tifrunner.gnm1.ann1.AAW7H5 Arachis hypogaea HOM05D002504 ORTHO05D007555 1.1e-124 450.7 376 59.8
arahy.Tifrunner.gnm1.ann1.A4B6B0 Arachis hypogaea HOM05D002504 ORTHO05D007555 2.5e-124 449.5 376 59.3
Cc04_g15430 Coffea canephora HOM05D002504 ORTHO05D007555 3.3e-124 449.1 376 61.2
Lalb_Chr12g0196751 Lupinus albus HOM05D002504 ORTHO05D007555 5.6e-124 448.4 378 60.6
Psat5g114360 Pisum sativum HOM05D002504 ORTHO05D007555 4.8e-123 445.3 376 60.4
TPR.G1695 Trifolium pratense HOM05D002504 ORTHO05D007555 9.0e-122 441.0 377 60.5
CANSAT78G1429 Cannabis sativa HOM05D002504 ORTHO05D007555 1.7e-120 436.8 378 59.8
Ca_16191_v3 Cicer arietinum L. HOM05D002504 ORTHO05D007555 4.9e-120 435.3 377 58.4
Oeu022629.1 Olea europaea HOM05D002504 ORTHO05D007555 9.3e-119 431.0 378 55.3
Eucgr.A00822 Eucalyptus grandis HOM05D002504 ORTHO05D007555 7.9e-118 427.9 376 56.4
CARHR019500 Cardamine hirsuta HOM05D002504 ORTHO05D007555 8.7e-117 424.5 376 58.0
AT1G18850 Arabidopsis thaliana HOM05D002504 ORTHO05D007555 3.3e-116 422.5 383 57.2
Glyma.05G029300 Glycine max HOM05D002504 ORTHO05D007555 9.7e-116 421.0 378 58.7
PGR083G1477 Punica granatum HOM05D002504 ORTHO05D007555 2.8e-115 419.5 377 57.0
Carub.0001s1850 Capsella rubella HOM05D002504 ORTHO05D007555 6.9e-114 414.8 397 54.9
AL1G31390 Arabidopsis lyrata HOM05D002504 ORTHO05D007555 1.5e-113 413.7 381 56.2
Nitab4.5_0000269g0140 Nicotiana tabacum HOM05D002504 ORTHO05D007555 7.7e-113 411.4 376 55.6
Nn3g16999 Nelumbo nucifera HOM05D002504 ORTHO05D007555 2.9e-112 409.5 376 55.3
Thhalv10007868m.g Eutrema salsugineum HOM05D002504 ORTHO05D007555 1.4e-111 407.1 376 56.1
Sopen06g027310 Solanum pennellii HOM05D002504 ORTHO05D007555 1.9e-111 406.8 376 52.4
Aa31LG7G3620 Aethionema arabicum HOM05D002504 ORTHO05D007555 7.2e-111 404.8 376 55.6
SalBow5G4081 Salvia bowleyana HOM05D002504 ORTHO05D007555 9.4e-111 404.4 378 54.2
SHI03355 Sapria himalayana HOM05D002504 ORTHO05D007555 2.1e-110 403.3 381 52.0
Solyc06g071010.4 Solanum lycopersicum HOM05D002504 ORTHO05D007555 2.1e-110 403.3 376 52.4
PGSC0003DMG400033071 Solanum tuberosum HOM05D002504 ORTHO05D007555 2.1e-110 403.3 376 52.7
Peaxi162Scf00013g00007 Petunia axillaris HOM05D002504 ORTHO05D007555 7.9e-110 401.4 381 54.3
Sp1g16830 Schrenkiella parvula HOM05D002504 ORTHO05D007555 1.0e-109 401.0 404 53.7
A06p15070 Brassica napus HOM05D002504 ORTHO05D007555 1.8e-109 400.2 376 54.8
Nitab4.5_0007394g0010 Nicotiana tabacum HOM05D002504 ORTHO05D007555 2.3e-109 399.8 376 54.0
BraA06t24622Z Brassica rapa HOM05D002504 ORTHO05D007555 1.1e-108 397.5 376 54.0
CAN.G628.37 Capsicum annuum HOM05D002504 ORTHO05D007555 9.7e-108 394.4 378 54.0
Aqoxy3G03288 Aquilegia oxysepala HOM05D002504 ORTHO05D007555 1.1e-106 391.0 379 53.8
C05p17270 Brassica napus HOM05D002504 ORTHO05D007555 1.1e-106 391.0 403 51.6
BolC5t30427H Brassica oleracea HOM05D002504 ORTHO05D007555 1.1e-106 391.0 403 51.6
BcaC05g25787 Brassica carinata HOM05D002504 ORTHO05D007555 2.6e-105 386.3 403 50.9
Lsat_1_v5_gn_1_10961 Lactuca sativa HOM05D002504 ORTHO05D007555 3.4e-105 386.0 395 51.9
BcaB07g31903 Brassica carinata HOM05D002504 ORTHO05D007555 8.5e-104 381.3 405 51.6
MSTRG.4344 Avicennia marina HOM05D002504 ORTHO05D007555 4.2e-103 379.0 376 51.6
GSVIVG01008049001 Vitis vinifera HOM05D002504 ORTHO05D007555 2.7e-102 376.3 341 57.5
Sc10g0009970 Simmondsia chinensis HOM05D002504 ORTHO05D007555 6.1e-102 375.2 377 52.5
Lj7P436T44 Lonicera japonica HOM05D002504 ORTHO05D007555 3.0e-101 372.9 314 60.2
DCAR_001955 Daucus carota HOM05D002504 ORTHO05D007555 3.3e-100 369.4 375 51.7
DCAR_001117 Daucus carota HOM05D002504 ORTHO05D007555 5.9e-97 358.6 375 50.4
Migut.I00134 Erythranthe guttata HOM05D002504 ORTHO05D007555 2.2e-96 356.7 382 49.5
Ah.02g112510 Amaranthus hybridus HOM05D002504 ORTHO05D007555 2.9e-96 356.3 382 49.0
EL10As5g23568 Beta vulgaris HOM05D002504 ORTHO05D007555 3.6e-94 349.4 382 49.2
CDE07G0237 Ceratophyllum demersum HOM05D002504 ORTHO05D007555 4.7e-94 349.0 373 47.2
MBI03_g18947_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 3.9e-93 345.9 377 47.5
AUR62038455 Chenopodium quinoa HOM05D002504 ORTHO05D007555 8.8e-93 344.7 384 46.9
AUR62042153 Chenopodium quinoa HOM05D002504 ORTHO05D007555 5.7e-92 342.0 384 46.4
HanXRQChr06g0178031 Helianthus annuus HOM05D002504 ORTHO05D007555 3.1e-90 336.3 378 47.9
HPP92_004873 Vanilla planifolia HOM05D002504 ORTHO05D007555 1.2e-89 334.3 380 46.3
MBI11_g21312_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 1.3e-88 330.9 375 46.7
PSO832G2768 Papaver somniferum HOM05D002504 ORTHO05D007555 2.2e-88 330.1 377 45.9
PSO591G0510 Papaver somniferum HOM05D002504 ORTHO05D007555 3.8e-88 329.3 377 46.2
unitig_52.g17495 Utricularia gibba HOM05D002504 ORTHO05D007555 2.7e-86 323.2 377 46.4
MBI03_g28522_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 4.7e-86 322.4 375 45.3
Lj5P114T15 Lonicera japonica HOM05D002504 ORTHO05D007555 2.6e-84 316.6 247 62.3
SGA_v2.0_scaffold56G20046 Striga asiatica HOM05D002504 ORTHO05D007555 2.9e-80 303.1 318 49.1
PSO063G6525 Papaver somniferum HOM05D002504 ORTHO05D007555 3.2e-79 299.7 377 44.0
Nn5g27262 Nelumbo nucifera HOM05D002504 ORTHO05D007555 5.5e-79 298.9 255 58.4
ECA236G0190 Erigeron canadensis HOM05D002504 ORTHO05D007332 9.8e-68 261.5 293 48.1
Dinv02434 Davidia involucrata HOM05D002504 ORTHO05D007555 1.1e-58 231.5 165 70.9
ATR1120G016 Amborella trichopoda HOM05D002504 ORTHO05D007555 7.0e-58 228.8 406 37.9
Os01g0112100 Oryza sativa ssp. japonica HOM05D002504 ORTHO05D007555 1.3e-43 181.4 246 39.4
Zm00001eb126250 Zea mays HOM05D002504 ORTHO05D007555 3.0e-40 170.2 370 31.9
Aa31LG9G8990 Aethionema arabicum HOM05D000710 ORTHO05D000336 8.6e-40 168.7 246 41.5
Duzib205G0461 Durio zibethinus HOM05D002504 ORTHO05D007555 8.6e-40 168.7 311 37.9
Zm00001eb334590 Zea mays HOM05D002504 ORTHO05D007555 9.5e-39 165.2 383 31.3
SEGI_18201 Sequoiadendron giganteum HOM05D002504 ORTHO05D007555 5.1e-32 142.9 380 28.7
Ciclev10033409m.g Citrus clementina HOM05D002504 ORTHO05D007555 2.2e-27 127.5 180 43.9
BcaB07g32205 Brassica carinata HOM05D002504 ORTHO05D007555 1.9e-26 124.4 376 30.1
Mapoly0028s0021 Marchantia polymorpha HOM05D002504 ORTHO05D007555 4.2e-26 123.2 317 28.1
Pp3c1_3820 Physcomitrium patens HOM05D002504 ORTHO05D007555 6.0e-25 119.4 353 26.3
Pp3c1_3850 Physcomitrium patens HOM05D002504 ORTHO05D007555 6.0e-25 119.4 353 26.3
AagrBONN_evm.TU.Sc2ySwM_369.370 Anthoceros agrestis HOM05D002504 ORTHO05D007555 8.7e-24 115.5 327 28.1
Nn5g27265 Nelumbo nucifera HOM05D002504 ORTHO05D007555 1.5e-23 114.8 388 28.4
Sabra12G0030300 Salix brachista HOM05D002504 ORTHO05D007555 5.6e-23 112.8 164 43.9
arahy.Tifrunner.gnm1.ann1.8LRZ9F Arachis hypogaea HOM05D002504 ORTHO05D007555 2.1e-22 110.9 120 47.5
SMO367G0630 Selaginella moellendorffii HOM05D002504 ORTHO05D007555 1.1e-15 88.6 265 25.3
CBR_g26261 Chara braunii HOM05D002504 ORTHO05D007555 1.3e-11 75.1 234 29.5
COL.COLO4_31086 Corchorus olitorius HOM05D002504 ORTHO05D007555 3.5e-09 67.0 62 50.0
Dinv09820 Davidia involucrata HOM05D000025 ORTHO05D000450 2.5e-07 60.8 47 63.8


User provided reference genes

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