Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 1.5e-214 749.2 377 100.0
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 1.5e-180 636.3 377 84.4
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 9.4e-172 607.1 377 81.2
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 9.4e-172 607.1 429 73.4
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 6.1e-171 604.4 376 77.9
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 5.2e-170 601.3 375 78.1
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 5.9e-166 587.8 376 76.1
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 7.2e-164 580.9 370 77.0
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 7.2e-164 580.9 377 75.1
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 1.2e-163 580.1 375 75.7
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 2.7e-163 578.9 377 76.4
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 8.0e-163 577.4 377 75.3
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.8e-162 576.2 378 74.1
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 3.0e-162 575.5 377 72.1
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 1.2e-161 573.5 376 73.4
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 1.5e-161 573.2 376 73.4
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 2.0e-161 572.8 375 74.4
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 3.7e-160 568.5 376 72.6
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 3.7e-160 568.5 377 73.2
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 3.7e-160 568.5 376 74.2
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 1.4e-159 566.6 371 74.1
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 1.8e-159 566.2 377 72.9
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 1.8e-159 566.2 375 74.4
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 2.0e-158 562.8 371 74.9
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 2.0e-158 562.8 376 72.3
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 3.5e-158 562.0 377 72.1
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 3.5e-158 562.0 377 72.4
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 4.5e-158 561.6 376 73.4
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 1.3e-157 560.1 376 72.1
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 1.3e-157 560.1 376 71.8
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 2.9e-157 558.9 376 71.8
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 3.8e-157 558.5 375 73.9
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 1.1e-156 557.0 376 71.8
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 1.5e-156 556.6 376 72.1
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 3.3e-156 555.4 376 71.5
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 9.5e-156 553.9 375 70.4
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 3.6e-155 552.0 376 70.7
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 8.0e-155 550.8 376 70.5
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 1.0e-154 550.4 376 70.7
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 5.2e-154 548.1 385 69.9
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 5.7e-153 544.7 376 71.3
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 1.3e-152 543.5 375 71.5
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 2.2e-152 542.7 380 70.0
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 2.9e-152 542.3 376 70.7
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 5.9e-150 534.6 380 68.2
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 1.5e-148 530.0 375 66.9
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 3.3e-148 528.9 380 67.4
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 5.6e-148 528.1 375 69.1
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 9.5e-148 527.3 375 66.9
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 1.2e-147 526.9 375 68.8
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 1.5e-145 520.0 380 66.8
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 2.9e-144 515.8 375 67.7
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 1.1e-143 513.8 373 67.6
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 2.4e-143 512.7 376 66.8
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 1.2e-142 510.4 375 66.4
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 2.0e-142 509.6 376 64.6
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 3.5e-142 508.8 375 66.7
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 7.8e-142 507.7 376 67.3
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 3.0e-141 505.8 408 62.7
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 3.0e-141 505.8 365 70.1
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 1.5e-140 503.4 373 66.2
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 3.6e-139 498.8 378 64.6
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 1.8e-138 496.5 376 63.6
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 2.3e-138 496.1 375 64.3
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 3.1e-138 495.7 376 63.8
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 2.0e-137 493.0 379 64.1
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 3.4e-137 492.3 377 64.7
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 7.5e-137 491.1 378 62.4
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 9.8e-137 490.7 376 63.8
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 1.7e-136 490.0 375 64.8
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 3.7e-136 488.8 376 62.8
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 4.9e-136 488.4 376 63.3
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 4.9e-136 488.4 377 62.9
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 8.3e-136 487.6 377 62.6
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 8.3e-136 487.6 376 63.8
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 1.1e-135 487.3 377 63.1
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 1.4e-135 486.9 378 63.5
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 1.4e-135 486.9 377 62.9
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 1.4e-135 486.9 377 64.7
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 2.4e-135 486.1 377 62.9
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 2.4e-135 486.1 377 62.9
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 5.4e-135 485.0 376 62.8
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 3.5e-134 482.3 376 60.9
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 1.7e-133 479.9 376 64.4
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 1.1e-130 470.7 398 60.6
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 1.9e-127 459.9 376 61.4
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 3.9e-125 452.2 375 61.6
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 6.6e-125 451.4 314 69.1
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 1.6e-123 446.8 375 58.4
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 2.8e-123 446.0 424 54.2
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 2.9e-120 436.0 384 58.1
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 8.7e-117 424.5 372 55.4
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 1.4e-111 407.1 266 74.4
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 5.8e-105 385.2 376 48.1
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 3.0e-101 372.9 368 51.4
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 6.2e-99 365.2 272 65.4
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 3.7e-91 339.3 276 61.6
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 1.0e-88 331.3 406 46.8
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 7.7e-81 305.1 375 42.7
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 3.8e-80 302.8 188 75.0
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.9e-79 300.4 271 59.0
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 3.7e-75 286.2 383 39.2
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 1.2e-52 211.5 170 62.9
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 6.5e-48 195.7 135 71.9
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 4.0e-45 186.4 220 46.8
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 4.0e-45 186.4 220 46.8
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 1.7e-43 181.0 169 55.0
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 4.9e-43 179.5 121 68.6
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 3.1e-42 176.8 138 60.9
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 2.0e-41 174.1 125 68.0
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 1.9e-39 167.5 115 64.3
HanXRQChr15g0481161 Helianthus annuus HOM05D005972 ORTHO05D007548 7.0e-34 149.1 115 63.5
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 7.8e-33 145.6 375 30.7
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 6.6e-32 142.5 376 32.4
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 4.1e-26 123.2 107 61.7
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 2.5e-23 114.0 82 69.5
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 3.4e-20 103.6 356 25.3
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 1.2e-14 85.1 51 82.4
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 2.8e-14 84.0 57 73.7
CSS0030864 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 6.2e-14 82.8 104 46.2
COL.COLO4_10012 Corchorus olitorius HOM05D005972 ORTHO05D007548 8.1e-14 82.4 74 60.8
Zm00001eb076720 Zea mays HOM05D005972 ORTHO05D007548 1.8e-13 81.3 116 44.0
A05p16910 Brassica napus HOM05D005972 ORTHO05D007548 3.4e-12 77.0 92 48.9
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 1.9e-10 71.2 70 58.6
COL.COLO4_29892 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.6e-09 68.2 51 66.7
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 6.0e-09 66.2 67 50.7
CAN.G1940.2 Capsicum annuum HOM05D005972 ORTHO05D007548 1.0e-08 65.5 45 62.2
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 1.3e-08 65.1 93 44.1
Gohir.A10G096600 Gossypium hirsutum HOM05D001367 ORTHO05D005289 1.3e-08 65.1 321 23.7
Duzib192G0392 Durio zibethinus HOM05D001142 ORTHO05D004628 1.7e-08 64.7 277 28.2
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 2.3e-08 64.3 45 68.9
Thecc.01G027000 Theobroma cacao HOM05D001367 ORTHO05D005289 2.3e-08 64.3 343 25.4
CDE08G1644 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 3.0e-08 63.9 43 65.1
Gohir.D10G091500 Gossypium hirsutum HOM05D001367 ORTHO05D005289 1.1e-07 62.0 332 24.1
Duzib235G1209 Durio zibethinus HOM05D001142 ORTHO05D004628 1.5e-07 61.6 275 26.9
Gorai.011G100500 Gossypium raimondii HOM05D001367 ORTHO05D005289 2.5e-07 60.8 321 23.4
TAR375G0890 Trochodendron aralioides HOM05D005972 ORTHO05D007548 3.3e-07 60.5 39 71.8
A07p45510 Brassica napus HOM05D001142 ORTHO05D004628 4.3e-07 60.1 269 25.7
C06p54340 Brassica napus HOM05D001142 ORTHO05D004628 4.3e-07 60.1 269 25.7
BolC6t40445H Brassica oleracea HOM05D001142 ORTHO05D004628 4.3e-07 60.1 269 25.7
BraA07t32053Z Brassica rapa HOM05D001142 ORTHO05D004628 4.3e-07 60.1 269 25.7
Thhalv10018951m.g Eutrema salsugineum HOM05D001142 ORTHO05D004628 4.3e-07 60.1 264 25.8
MD01G1214800 Malus domestica HOM05D002314 ORTHO05D002538 7.3e-07 59.3 387 26.6
Manes.01G140400 Manihot esculenta HOM05D001367 ORTHO05D005289 9.6e-07 58.9 308 22.1
BcaC08g47559 Brassica carinata HOM05D001142 ORTHO05D004628 1.6e-06 58.2 267 25.1
QL10p007477 Quercus lobata HOM05D001367 ORTHO05D005289 1.6e-06 58.2 333 21.9
MCO02G045 Micromonas commoda HOM05D001367 ORTHO05D002514 2.1e-06 57.8 295 21.4
DCAR_016218 Daucus carota HOM05D001142 ORTHO05D004628 2.8e-06 57.4 267 26.2
MD07G1284500 Malus domestica HOM05D002314 ORTHO05D002538 2.8e-06 57.4 387 26.9
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 3.6e-06 57.0 130 27.7
CARHR281340 Cardamine hirsuta HOM05D001367 ORTHO05D005289 3.6e-06 57.0 160 30.6
AL8G45150 Arabidopsis lyrata HOM05D001367 ORTHO05D005289 4.7e-06 56.6 160 30.0
Gohir.A12G252000 Gossypium hirsutum HOM05D002314 ORTHO05D002538 4.7e-06 56.6 391 24.3
Prupe.2G306700 Prunus persica HOM05D002314 ORTHO05D002538 4.7e-06 56.6 386 25.6
Thecc.06G090000 Theobroma cacao HOM05D001142 ORTHO05D004628 4.7e-06 56.6 146 36.3
Rhsim12G0198700 Rhododendron simsii HOM05D001142 ORTHO05D004628 6.2e-06 56.2 296 24.7
CAN.G2846.2 Capsicum annuum HOM05D005972 ORTHO05D007548 8.1e-06 55.8 49 59.2


User provided reference genes

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