Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G025200 Carya illinoinensis HOM05D000119 ORTHO05D000054 1.5e-115 419.5 198 100.0
QL10p011091 Quercus lobata HOM05D000119 ORTHO05D000054 5.5e-70 268.1 199 68.3
Haze_07511 Corylus avellana HOM05D000119 ORTHO05D000054 1.6e-69 266.5 200 70.0
Cfa019145 Carpinus fangiana HOM05D000119 ORTHO05D000054 3.9e-68 261.9 200 68.5
QL10p010666 Quercus lobata HOM05D000119 ORTHO05D000054 5.6e-67 258.1 200 66.5
CiPaw.12G027200 Carya illinoinensis HOM05D000119 ORTHO05D000054 3.5e-53 212.2 180 66.7
Duzib068G0134 Durio zibethinus HOM05D000119 ORTHO05D000054 1.6e-45 186.8 208 53.8
Thecc.03G013800 Theobroma cacao HOM05D000119 ORTHO05D000054 5.7e-43 178.3 214 52.8
COL.COLO4_30059 Corchorus olitorius HOM05D000119 ORTHO05D000054 1.6e-37 160.2 204 49.5
Glyma.05G038500 Glycine max HOM05D000119 ORTHO05D000054 1.7e-34 150.2 188 48.9
Lalb_Chr13g0297751 Lupinus albus HOM05D000119 ORTHO05D000054 2.2e-34 149.8 205 45.4
FAN04G3146 Fragaria x ananassa HOM05D000119 ORTHO05D000054 6.3e-34 148.3 232 45.3
Glyma.17G088600 Glycine max HOM05D000119 ORTHO05D000054 6.3e-34 148.3 206 46.1
FAN13G0934 Fragaria x ananassa HOM05D000119 ORTHO05D000054 1.8e-33 146.7 231 45.5
FAN18G2106 Fragaria x ananassa HOM05D000119 ORTHO05D000054 2.4e-33 146.4 232 45.3
FvH4_5g05420 Fragaria vesca HOM05D000119 ORTHO05D000054 3.1e-33 146.0 232 45.3
FAN18G2311 Fragaria x ananassa HOM05D000119 ORTHO05D000054 3.1e-33 146.0 232 45.3
Potri.012G082000 Populus trichocarpa HOM05D000119 ORTHO05D000054 5.3e-33 145.2 209 45.5
Potri.015G077700 Populus trichocarpa HOM05D000119 ORTHO05D000054 5.3e-33 145.2 195 47.2
Sed0000510 Sechium edule HOM05D000119 ORTHO05D000054 1.6e-32 143.7 207 44.0
VMungo1215G0738 Vigna mungo HOM05D000119 ORTHO05D000054 2.6e-32 142.9 204 43.1
FAN08G1764 Fragaria x ananassa HOM05D000119 ORTHO05D000054 5.9e-32 141.7 231 44.6
Sabra15G0102300 Salix brachista HOM05D000119 ORTHO05D000054 7.7e-32 141.4 211 44.5
Hma1.2p1_2469F.1_g322710 Hydrangea macrophylla HOM05D000119 ORTHO05D000054 1.3e-31 140.6 200 42.0
GSVIVG01007731001 Vitis vinifera HOM05D000119 ORTHO05D000054 3.8e-31 139.0 206 44.7
CSS0028032 Camellia sinensis var. sinensis HOM05D000119 ORTHO05D000054 4.2e-30 135.6 210 45.2
Manes.14G064900 Manihot esculenta HOM05D000119 ORTHO05D000054 5.5e-30 135.2 115 57.4
MD06G1172900 Malus domestica HOM05D000119 ORTHO05D000054 7.2e-30 134.8 225 41.8
MD14G1179000 Malus domestica HOM05D000119 ORTHO05D000054 7.2e-30 134.8 225 42.2
Prupe.5G172400 Prunus persica HOM05D000119 ORTHO05D000054 2.1e-29 133.3 191 48.2
Phvul.003G201300 Phaseolus vulgaris HOM05D000119 ORTHO05D000054 2.7e-29 132.9 187 44.4
Cpa.g.sc76.38 Carica papaya HOM05D000119 ORTHO05D000054 3.6e-29 132.5 225 41.3
TPR.G37462 Trifolium pratense HOM05D000119 ORTHO05D000054 3.6e-29 132.5 210 42.4
Ciclev10024427m.g Citrus clementina HOM05D000119 ORTHO05D000054 8.0e-29 131.3 197 44.7
Lj4g0016543 Lotus japonicus HOM05D000119 ORTHO05D000054 1.8e-28 130.2 185 42.2
Sabra12G0058700 Salix brachista HOM05D000119 ORTHO05D000054 1.8e-28 130.2 183 44.3
RcHm_v2.0_Chr7g0193411 Rosa chinensis HOM05D000119 ORTHO05D000054 3.0e-28 129.4 191 45.0
Eucgr.B00301 Eucalyptus grandis HOM05D000119 ORTHO05D000054 6.7e-28 128.3 202 42.1
Lalb_Chr23g0273261 Lupinus albus HOM05D000119 ORTHO05D000054 8.8e-28 127.9 181 44.8
Psat4g057560 Pisum sativum HOM05D000119 ORTHO05D000054 1.1e-27 127.5 206 40.3
Lj1g0015086 Lotus japonicus HOM05D000119 ORTHO05D000054 5.7e-27 125.2 204 43.1
TAR371G0936 Trochodendron aralioides HOM05D000119 ORTHO05D000054 1.7e-26 123.6 198 41.4
Manes.06G105800 Manihot esculenta HOM05D000119 ORTHO05D000054 2.8e-26 122.9 112 57.1
Medtr3g077650 Medicago truncatula HOM05D000119 ORTHO05D000054 4.8e-26 122.1 198 44.4
VMungo1309G2378 Vigna mungo HOM05D000119 ORTHO05D000054 8.2e-26 121.3 200 44.0
Sed0020734 Sechium edule HOM05D000119 ORTHO05D000054 9.1e-25 117.9 206 38.3
Lalb_Chr12g0201631 Lupinus albus HOM05D000119 ORTHO05D000054 2.0e-24 116.7 205 40.0
Ca_21931_v3 Cicer arietinum L. HOM05D000119 ORTHO05D000054 7.7e-24 114.8 180 40.6
Lj5A125G63 Lonicera japonica HOM05D000119 ORTHO05D000054 1.3e-23 114.0 168 45.2
THA.LOC104808391 Tarenaya hassleriana HOM05D000119 ORTHO05D000054 1.3e-23 114.0 213 39.4
TPR.G25322 Trifolium pratense HOM05D000119 ORTHO05D000054 1.7e-23 113.6 209 39.7
TAR629G1662 Trochodendron aralioides HOM05D000119 ORTHO05D000054 1.7e-23 113.6 150 43.3
CSS0017358 Camellia sinensis var. sinensis HOM05D000119 ORTHO05D000054 5.5e-22 108.6 214 37.4
QL10p011107 Quercus lobata HOM05D000119 ORTHO05D000054 9.4e-22 107.8 75 66.7
QL10p010647 Quercus lobata HOM05D000119 ORTHO05D000054 1.2e-21 107.5 75 66.7
TWI39G0554 Tripterygium wilfordii HOM05D000119 ORTHO05D000054 4.7e-21 105.5 191 37.7
Potri.005G118500 Populus trichocarpa HOM05D000119 ORTHO05D000054 1.8e-20 103.6 183 42.1
Medtr4g105660 Medicago truncatula HOM05D000119 ORTHO05D000054 4.0e-20 102.4 193 40.4
Nn8g39357 Nelumbo nucifera HOM05D000119 ORTHO05D000054 4.0e-20 102.4 199 35.2
Phvul.009G177900 Phaseolus vulgaris HOM05D000119 ORTHO05D000054 4.0e-20 102.4 199 39.7
PGR083G1261 Punica granatum HOM05D000119 ORTHO05D000054 5.2e-20 102.1 206 38.3
QL10p010661 Quercus lobata HOM05D000119 ORTHO05D000054 6.8e-20 101.7 78 65.4
Actinidia33073 Actinidia chinensis HOM05D000119 ORTHO05D000054 4.4e-19 99.0 204 38.2
Phvul.009G177100 Phaseolus vulgaris HOM05D000119 ORTHO05D000054 5.7e-19 98.6 200 38.5
Atru.chr9.2488 Acer truncatum HOM05D000119 ORTHO05D000054 9.8e-19 97.8 194 41.2
Hma1.2p1_2165F.1_g315820 Hydrangea macrophylla HOM05D000119 ORTHO05D000054 9.8e-19 97.8 143 39.9
Sabra05G0097500 Salix brachista HOM05D000119 ORTHO05D000054 2.2e-18 96.7 183 39.9
TWI14G1329 Tripterygium wilfordii HOM05D000119 ORTHO05D000054 3.7e-18 95.9 171 40.4
Gohir.A12G274600 Gossypium hirsutum HOM05D000119 ORTHO05D000054 1.8e-17 93.6 218 36.2
Gohir.D12G275300 Gossypium hirsutum HOM05D000119 ORTHO05D000054 2.4e-17 93.2 219 35.2
Gorai.008G295800 Gossypium raimondii HOM05D000119 ORTHO05D000054 2.4e-17 93.2 218 35.3
ClCG06G017050 Citrullus lanatus HOM05D000119 ORTHO05D000054 4.1e-17 92.4 208 34.1
arahy.Tifrunner.gnm1.ann1.HJVQ9Q Arachis hypogaea HOM05D000119 ORTHO05D000054 9.1e-17 91.3 212 36.3
Nn3g16831 Nelumbo nucifera HOM05D000119 ORTHO05D000054 9.1e-17 91.3 197 36.0
vmacro19395 Vaccinium macrocarpon HOM05D000119 ORTHO05D000054 1.2e-16 90.9 196 37.2
SalBow6G3040 Salvia bowleyana HOM05D000119 ORTHO05D000054 1.6e-16 90.5 185 34.6
CsaV3_1G001460 Cucumis sativus L. HOM05D000119 ORTHO05D000054 1.7e-15 87.0 211 34.6
CANSAT80G0454 Cannabis sativa HOM05D000119 ORTHO05D000054 2.2e-15 86.7 236 37.3
Glyma.04G184200 Glycine max HOM05D000119 ORTHO05D000054 2.2e-15 86.7 196 34.2
Actinidia19327 Actinidia chinensis HOM05D000119 ORTHO05D000054 2.9e-15 86.3 204 36.8
Glyma.06G181800 Glycine max HOM05D000119 ORTHO05D000054 6.5e-15 85.1 96 54.2
Rhsim08G0173400 Rhododendron simsii HOM05D000119 ORTHO05D000054 8.5e-15 84.7 193 34.2
MELO3C017090.2 Cucumis melo HOM05D000119 ORTHO05D000054 1.9e-14 83.6 210 33.3
Peaxi162Scf00009g00022 Petunia axillaris HOM05D000119 ORTHO05D000054 4.2e-14 82.4 215 34.9
Dinv20643 Davidia involucrata HOM05D000119 ORTHO05D000054 7.2e-14 81.6 219 35.2
Hma1.2p1_0592F.1_g185400 Hydrangea macrophylla HOM05D000119 ORTHO05D000054 7.2e-14 81.6 109 38.5
Peaxi162Scf00689g00121 Petunia axillaris HOM05D000119 ORTHO05D000054 9.4e-14 81.3 188 35.1
PSO210G0664 Papaver somniferum HOM05D000119 ORTHO05D000054 3.0e-12 76.3 220 30.0
Thhalv10026824m.g Eutrema salsugineum HOM05D000119 ORTHO05D000054 6.8e-12 75.1 183 31.7
arahy.Tifrunner.gnm1.ann1.RW7WYG Arachis hypogaea HOM05D000119 ORTHO05D000054 1.2e-11 74.3 206 34.0
PSO832G2893 Papaver somniferum HOM05D000119 ORTHO05D000054 1.5e-11 73.9 224 29.5
Thecc.04G012600 Theobroma cacao HOM05D000119 ORTHO05D000054 1.5e-11 73.9 227 31.3
HanXRQChr05g0155731 Helianthus annuus HOM05D000119 ORTHO05D000054 5.7e-11 72.0 188 31.4
CiPaw.03G040600 Carya illinoinensis HOM05D000119 ORTHO05D000054 9.8e-11 71.2 234 29.5
BcaNung05915 Brassica carinata HOM05D000119 ORTHO05D000054 3.7e-10 69.3 204 30.4
Lsat_1_v5_gn_5_14920 Lactuca sativa HOM05D000119 ORTHO05D000054 6.3e-10 68.6 170 30.6
BcaC09g51474 Brassica carinata HOM05D000119 ORTHO05D000054 1.4e-09 67.4 208 29.8
C01p12750 Brassica napus HOM05D000119 ORTHO05D000054 1.8e-09 67.0 206 29.6
BolC1t01252H Brassica oleracea HOM05D000119 ORTHO05D000054 1.8e-09 67.0 206 29.6
SHI02918 Sapria himalayana HOM05D000119 ORTHO05D000054 2.4e-09 66.6 192 31.2
BcaB04g18497 Brassica carinata HOM05D000119 ORTHO05D000054 4.1e-09 65.9 209 31.1
Manes.15G149100 Manihot esculenta HOM05D000119 ORTHO05D000054 5.4e-09 65.5 225 29.3
Cc04_g14230 Coffea canephora HOM05D000119 ORTHO05D000054 1.2e-08 64.3 200 30.0
DCAR_028018 Daucus carota HOM05D000119 ORTHO05D000054 1.2e-08 64.3 204 28.9
BraA01t01024Z Brassica rapa HOM05D000119 ORTHO05D000054 2.0e-08 63.5 206 29.6
Dinv35086 Davidia involucrata HOM05D000119 ORTHO05D000054 2.0e-08 63.5 205 28.3
A01p10780 Brassica napus HOM05D000119 ORTHO05D000054 4.5e-08 62.4 209 29.2
DCAR_016482 Daucus carota HOM05D000119 ORTHO05D000054 4.5e-08 62.4 206 28.6
AT4G18770 Arabidopsis thaliana HOM05D000119 ORTHO05D000054 1.0e-07 61.2 205 29.3
BolC7t45499H Brassica oleracea HOM05D000119 ORTHO05D000054 1.3e-07 60.8 174 29.3
CSS0007803 Camellia sinensis var. sinensis HOM05D000119 ORTHO05D000054 1.3e-07 60.8 180 33.3
GSVIVG01032442001 Vitis vinifera HOM05D000032 ORTHO05D001837 1.3e-07 60.8 208 28.8
Aqoxy3G01058 Aquilegia oxysepala HOM05D000119 ORTHO05D000054 1.7e-07 60.5 107 39.3
Ciclev10017526m.g Citrus clementina HOM05D000119 ORTHO05D000054 1.7e-07 60.5 219 26.5
AL7G35480 Arabidopsis lyrata HOM05D000119 ORTHO05D000054 2.3e-07 60.1 202 30.7
C07p49960 Brassica napus HOM05D000119 ORTHO05D000054 2.3e-07 60.1 174 28.7
Duzib187G0299 Durio zibethinus HOM05D000119 ORTHO05D000054 2.9e-07 59.7 236 28.4
MBI10_g28002_MAGBIO Magnolia biondii HOM05D000119 ORTHO05D000054 2.9e-07 59.7 108 35.2
Aqoxy3G02896 Aquilegia oxysepala HOM05D000119 ORTHO05D000054 3.8e-07 59.3 165 31.5
MBI19_g13196_MAGBIO Magnolia biondii HOM05D000119 ORTHO05D000054 3.8e-07 59.3 173 31.8
SalBow5G3031 Salvia bowleyana HOM05D000119 ORTHO05D000054 3.8e-07 59.3 179 34.1
EL10Ac5g10736 Beta vulgaris HOM05D000119 ORTHO05D000054 6.6e-07 58.5 218 30.3
BcaC01g00569 Brassica carinata HOM05D000119 ORTHO05D000054 8.6e-07 58.2 208 30.8
C03p81460 Brassica napus HOM05D000119 ORTHO05D000054 8.6e-07 58.2 208 30.8
BolC3t20417H Brassica oleracea HOM05D000119 ORTHO05D000054 8.6e-07 58.2 208 30.8
Sp7g17470 Schrenkiella parvula HOM05D000119 ORTHO05D000054 8.6e-07 58.2 66 40.9
A08p13980 Brassica napus HOM05D000119 ORTHO05D000054 1.5e-06 57.4 208 30.8
Haze_14699 Corylus avellana HOM05D000119 ORTHO05D000054 1.9e-06 57.0 218 27.5
BraA08t33389Z Brassica rapa HOM05D000119 ORTHO05D000054 3.3e-06 56.2 208 28.4
CARHR225620 Cardamine hirsuta HOM05D000119 ORTHO05D000054 5.6e-06 55.5 215 28.4


User provided reference genes

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