Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G011900 Carya illinoinensis HOM05D003221 ORTHO05D004432 7.1e-72 273.9 141 100.0
TAR371G1119 Trochodendron aralioides HOM05D003221 ORTHO05D004432 6.0e-55 217.6 135 83.7
Ciclev10020559m.g Citrus clementina HOM05D003221 ORTHO05D004432 1.3e-54 216.5 135 83.0
Atru.chr9.1015 Acer truncatum HOM05D003221 ORTHO05D004432 3.9e-54 214.9 135 83.0
ATR0681G172 Amborella trichopoda HOM05D003221 ORTHO05D004432 3.9e-54 214.9 135 82.2
Aqoxy1G01463 Aquilegia oxysepala HOM05D003221 ORTHO05D004432 3.9e-54 214.9 135 82.2
Gohir.D12G190900 Gossypium hirsutum HOM05D003221 ORTHO05D004432 3.9e-54 214.9 135 82.2
Gorai.008G204800 Gossypium raimondii HOM05D003221 ORTHO05D004432 3.9e-54 214.9 135 82.2
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 3.9e-54 214.9 135 82.2
Manes.14G055233 Manihot esculenta HOM05D003221 ORTHO05D004432 6.7e-54 214.2 135 82.2
ATR0824G170 Amborella trichopoda HOM05D003221 ORTHO05D004432 8.7e-54 213.8 135 81.5
Eucgr.I00301 Eucalyptus grandis HOM05D003221 ORTHO05D004432 8.7e-54 213.8 135 81.5
QL10p005036 Quercus lobata HOM05D003221 ORTHO05D004432 8.7e-54 213.8 135 82.2
Cfa018890 Carpinus fangiana HOM05D003221 ORTHO05D004432 1.1e-53 213.4 135 82.2
Haze_07275 Corylus avellana HOM05D003221 ORTHO05D004630 1.1e-53 213.4 135 82.2
QL05p040991 Quercus lobata HOM05D003221 ORTHO05D004432 1.1e-53 213.4 135 82.2
GSVIVG01007538001 Vitis vinifera HOM05D003221 ORTHO05D004432 1.1e-53 213.4 135 82.2
CsaV3_1G009320 Cucumis sativus L. HOM05D003221 ORTHO05D004432 1.5e-53 213.0 135 82.2
Manes.06G115400 Manihot esculenta HOM05D003221 ORTHO05D004432 1.5e-53 213.0 135 83.0
PGR083G1499 Punica granatum HOM05D003221 ORTHO05D004432 1.5e-53 213.0 135 81.5
Sed0024107 Sechium edule HOM05D003221 ORTHO05D004432 1.5e-53 213.0 135 81.5
TWI39G0859 Tripterygium wilfordii HOM05D003221 ORTHO05D004432 1.5e-53 213.0 135 80.7
Duzib084G0381 Durio zibethinus HOM05D003221 ORTHO05D004432 1.9e-53 212.6 135 81.5
MBI06_g05239_MAGBIO Magnolia biondii HOM05D003221 ORTHO05D004432 1.9e-53 212.6 135 81.5
MD06G1151500 Malus domestica HOM05D003221 ORTHO05D004432 1.9e-53 212.6 135 81.5
Prupe.5G156700 Prunus persica HOM05D003221 ORTHO05D004432 1.9e-53 212.6 135 81.5
CiPaw.12G035900 Carya illinoinensis HOM05D003221 ORTHO05D004432 2.5e-53 212.2 135 81.5
Duzib068G0069 Durio zibethinus HOM05D003221 ORTHO05D004432 2.5e-53 212.2 135 81.5
Duzib205G0731 Durio zibethinus HOM05D003221 ORTHO05D004432 2.5e-53 212.2 135 80.7
Gohir.D03G103700 Gossypium hirsutum HOM05D003221 ORTHO05D004432 2.5e-53 212.2 135 81.5
Gorai.003G109300 Gossypium raimondii HOM05D003221 ORTHO05D004432 2.5e-53 212.2 135 81.5
SGA_v2.0_scaffold350G49637 Striga asiatica HOM05D003221 ORTHO05D004432 2.5e-53 212.2 135 80.0
MSTRG.4587 Avicennia marina HOM05D003221 ORTHO05D004432 3.3e-53 211.8 135 81.5
ClCG03G003520 Citrullus lanatus HOM05D003221 ORTHO05D004432 3.3e-53 211.8 135 81.5
MELO3C002335.2 Cucumis melo HOM05D003221 ORTHO05D004432 3.3e-53 211.8 135 81.5
Thecc.03G123100 Theobroma cacao HOM05D003221 ORTHO05D004432 3.3e-53 211.8 135 81.5
C01p20120 Brassica napus HOM05D003221 ORTHO05D004432 4.3e-53 211.5 135 79.3
BolC1t01941H Brassica oleracea HOM05D003221 ORTHO05D004432 4.3e-53 211.5 135 79.3
Cpa.g.sc4.74 Carica papaya HOM05D003221 ORTHO05D004432 4.3e-53 211.5 134 82.1
Gohir.A03G062400 Gossypium hirsutum HOM05D003221 ORTHO05D004432 4.3e-53 211.5 135 80.7
Os04g0485000 Oryza sativa ssp. japonica HOM05D003221 ORTHO05D004432 4.3e-53 211.5 135 80.0
Aa31LG7G11020 Aethionema arabicum HOM05D003221 ORTHO05D004432 5.6e-53 211.1 135 80.0
Dinv11105 Davidia involucrata HOM05D003221 ORTHO05D004432 5.6e-53 211.1 135 81.5
FvH4_3g25540 Fragaria vesca HOM05D003221 ORTHO05D004432 5.6e-53 211.1 135 80.7
FAN11G1198 Fragaria x ananassa HOM05D003221 ORTHO05D004432 5.6e-53 211.1 135 80.7
Potri.012G093500 Populus trichocarpa HOM05D003221 ORTHO05D004432 5.6e-53 211.1 135 81.5
RcHm_v2.0_Chr7g0191061 Rosa chinensis HOM05D003221 ORTHO05D004432 5.6e-53 211.1 135 80.7
TWI14G1333 Tripterygium wilfordii HOM05D003221 ORTHO05D004432 5.6e-53 211.1 135 80.7
ECA232G2465 Erigeron canadensis HOM05D003221 ORTHO05D004432 7.4e-53 210.7 135 80.0
Hma1.2p1_0209F.1_g088430 Hydrangea macrophylla HOM05D003221 ORTHO05D004432 7.4e-53 210.7 135 81.5
MBI11_g19363_MAGBIO Magnolia biondii HOM05D003221 ORTHO05D004432 7.4e-53 210.7 135 80.7
MD14G1163300 Malus domestica HOM05D003221 ORTHO05D004432 7.4e-53 210.7 135 80.7
Gohir.A12G188100 Gossypium hirsutum HOM05D003221 ORTHO05D004432 9.6e-53 210.3 135 80.7
Lsat_1_v5_gn_4_78821 Lactuca sativa HOM05D003221 ORTHO05D004432 9.6e-53 210.3 135 80.0
Potri.015G090900 Populus trichocarpa HOM05D003221 ORTHO05D004432 9.6e-53 210.3 135 80.7
BcaC06g32856 Brassica carinata HOM05D003221 ORTHO05D004432 1.3e-52 209.9 135 78.5
BcaNung07243 Brassica carinata HOM05D003221 ORTHO05D004432 1.3e-52 209.9 135 78.5
A01p16130 Brassica napus HOM05D003221 ORTHO05D004432 1.3e-52 209.9 135 78.5
A03p55560 Brassica napus HOM05D003221 ORTHO05D004432 1.3e-52 209.9 135 78.5
A08p21360 Brassica napus HOM05D003221 ORTHO05D004432 1.3e-52 209.9 135 78.5
C07p53800 Brassica napus HOM05D003221 ORTHO05D004432 1.3e-52 209.9 135 78.5
BraA01t01549Z Brassica rapa HOM05D003221 ORTHO05D004432 1.3e-52 209.9 135 78.5
BraA03t14625Z Brassica rapa HOM05D003221 ORTHO05D004432 1.3e-52 209.9 135 78.5
BraA08t34085Z Brassica rapa HOM05D003221 ORTHO05D004432 1.3e-52 209.9 135 78.5
CARHR232220 Cardamine hirsuta HOM05D003221 ORTHO05D004432 1.3e-52 209.9 135 78.5
Eucgr.K02756 Eucalyptus grandis HOM05D003221 ORTHO05D004432 1.3e-52 209.9 135 80.0
Thhalv10025431m.g Eutrema salsugineum HOM05D003221 ORTHO05D004432 1.3e-52 209.9 135 78.5
FAN16G0231 Fragaria x ananassa HOM05D003221 ORTHO05D004432 1.3e-52 209.9 135 80.0
FAN21G3720 Fragaria x ananassa HOM05D003221 ORTHO05D004432 1.3e-52 209.9 135 80.0
FAN25G3633 Fragaria x ananassa HOM05D003221 ORTHO05D004432 1.3e-52 209.9 135 80.0
HanXRQChr16g0497921 Helianthus annuus HOM05D003221 ORTHO05D004432 1.3e-52 209.9 138 77.5
Sp7g22810 Schrenkiella parvula HOM05D003221 ORTHO05D004432 1.3e-52 209.9 135 78.5
vmacro19238 Vaccinium macrocarpon HOM05D003221 ORTHO05D004432 1.3e-52 209.9 135 80.0
Zm00001eb246330 Zea mays HOM05D003221 ORTHO05D004432 1.3e-52 209.9 135 78.5
AT4G24820 Arabidopsis thaliana HOM05D003221 ORTHO05D004432 1.6e-52 209.5 135 78.5
BcaB03g12449 Brassica carinata HOM05D003221 ORTHO05D004432 1.6e-52 209.5 135 77.8
CANSAT80G0340 Cannabis sativa HOM05D003221 ORTHO05D004432 1.6e-52 209.5 135 80.7
Glyma.17G127100 Glycine max HOM05D003221 ORTHO05D004432 1.6e-52 209.5 135 81.5
SalBow5G2462 Salvia bowleyana HOM05D003221 ORTHO05D004432 1.6e-52 209.5 135 80.0
TPR.G37528 Trifolium pratense HOM05D003221 ORTHO05D004432 1.6e-52 209.5 135 80.7
Nn4g22458 Nelumbo nucifera HOM05D003221 ORTHO05D004432 2.1e-52 209.1 135 78.5
Phvul.003G208200 Phaseolus vulgaris HOM05D003221 ORTHO05D004432 2.1e-52 209.1 135 80.7
VMungo1215G0589 Vigna mungo HOM05D003221 ORTHO05D004432 2.1e-52 209.1 135 80.7
BcaC07g38153 Brassica carinata HOM05D003221 ORTHO05D004432 2.8e-52 208.8 135 77.8
BolC8t48588H Brassica oleracea HOM05D003221 ORTHO05D004432 2.8e-52 208.8 135 77.8
AUR62025726 Chenopodium quinoa HOM05D003221 ORTHO05D004432 2.8e-52 208.8 135 80.7
Cc04_g10290 Coffea canephora HOM05D003221 ORTHO05D004432 2.8e-52 208.8 135 80.0
Hma1.2p1_0046F.1_g027520 Hydrangea macrophylla HOM05D003221 ORTHO05D004432 2.8e-52 208.8 135 80.7
Medtr4g104080 Medicago truncatula HOM05D003221 ORTHO05D004432 2.8e-52 208.8 135 80.0
Nn3g16577 Nelumbo nucifera HOM05D003221 ORTHO05D004432 2.8e-52 208.8 135 78.5
Oeu011575.1 Olea europaea HOM05D003221 ORTHO05D004432 2.8e-52 208.8 135 79.3
Psat4g064960 Pisum sativum HOM05D003221 ORTHO05D004432 2.8e-52 208.8 135 80.0
Sabra15G0113000 Salix brachista HOM05D003221 ORTHO05D004432 2.8e-52 208.8 135 80.0
BolC7t45870H Brassica oleracea HOM05D003221 ORTHO05D004432 3.6e-52 208.4 135 77.8
Migut.I00477 Erythranthe guttata HOM05D003221 ORTHO05D004432 3.6e-52 208.4 135 79.3
Sed0014675 Sechium edule HOM05D003221 ORTHO05D004432 3.6e-52 208.4 135 79.3
SEGI_11838 Sequoiadendron giganteum HOM05D003221 ORTHO05D004432 3.6e-52 208.4 138 78.3
THA.LOC104825005 Tarenaya hassleriana HOM05D003221 ORTHO05D004432 3.6e-52 208.4 135 80.7
HPP92_024646 Vanilla planifolia HOM05D003221 ORTHO05D004432 3.6e-52 208.4 135 78.5
Zm00001eb079270 Zea mays HOM05D003221 ORTHO05D004432 3.6e-52 208.4 135 79.3
Carub.0007s1623 Capsella rubella HOM05D003221 ORTHO05D004432 4.8e-52 208.0 135 77.8
Glyma.05G044500 Glycine max HOM05D003221 ORTHO05D004432 4.8e-52 208.0 135 80.7
Nitab4.5_0000366g0070 Nicotiana tabacum HOM05D003221 ORTHO05D004432 4.8e-52 208.0 135 79.3
Rhsim08G0185100 Rhododendron simsii HOM05D003221 ORTHO05D004432 4.8e-52 208.0 135 80.0
arahy.Tifrunner.gnm1.ann1.BX07LP Arachis hypogaea HOM05D003221 ORTHO05D004432 6.2e-52 207.6 135 80.0
arahy.Tifrunner.gnm1.ann1.UKG7ME Arachis hypogaea HOM05D003221 ORTHO05D004432 6.2e-52 207.6 135 80.0
Ah.08g218090 Amaranthus hybridus HOM05D003221 ORTHO05D004432 8.1e-52 207.2 135 80.0
AL7G28360 Arabidopsis lyrata HOM05D003221 ORTHO05D004432 8.1e-52 207.2 135 77.0
Ca_05563_v3 Cicer arietinum L. HOM05D003221 ORTHO05D004432 8.1e-52 207.2 135 80.0
Lj4g0007668 Lotus japonicus HOM05D003221 ORTHO05D004432 8.1e-52 207.2 135 80.0
MSTRG.22924 Avicennia marina HOM05D003221 ORTHO05D004432 1.1e-51 206.8 134 78.4
CAN.G990.4 Capsicum annuum HOM05D003221 ORTHO05D004432 1.1e-51 206.8 135 79.3
Dinv38467 Davidia involucrata HOM05D003221 ORTHO05D004432 1.1e-51 206.8 135 79.3
Lj5A100G57 Lonicera japonica HOM05D003221 ORTHO05D004432 1.1e-51 206.8 135 78.5
THA.LOC104811603 Tarenaya hassleriana HOM05D003221 ORTHO05D004432 1.1e-51 206.8 135 80.0
TPR.G16844 Trifolium pratense HOM05D003221 ORTHO05D004432 1.1e-51 206.8 135 80.0
Gohir.D09G245900 Gossypium hirsutum HOM05D003221 ORTHO05D004432 1.4e-51 206.5 135 78.5
Gorai.006G270400 Gossypium raimondii HOM05D003221 ORTHO05D004432 1.4e-51 206.5 135 78.5
HanXRQChr09g0272871 Helianthus annuus HOM05D003221 ORTHO05D004432 1.4e-51 206.5 138 75.4
Hund05648 Selenicereus undatus HOM05D003221 ORTHO05D004432 1.4e-51 206.5 135 78.5
DCAR_027511 Daucus carota HOM05D003221 ORTHO05D004432 1.8e-51 206.1 134 79.9
Glyma.05G044900 Glycine max HOM05D003221 ORTHO05D004432 3.1e-51 205.3 135 79.3
Lj9A475T64 Lonicera japonica HOM05D003221 ORTHO05D004432 3.1e-51 205.3 135 78.5
Nitab4.5_0006219g0010 Nicotiana tabacum HOM05D003221 ORTHO05D004432 3.1e-51 205.3 135 78.5
Oeu033323.1 Olea europaea HOM05D003221 ORTHO05D004432 3.1e-51 205.3 135 77.8
unitig_747.g21330 Utricularia gibba HOM05D003221 ORTHO05D004432 3.1e-51 205.3 135 77.8
Actinidia16191 Actinidia chinensis HOM05D003221 ORTHO05D004432 4.0e-51 204.9 135 79.3
CSS0008999 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 4.0e-51 204.9 135 78.5
Lalb_Chr07g0183231 Lupinus albus HOM05D003221 ORTHO05D004432 4.0e-51 204.9 134 79.1
EL10Ac7g18076 Beta vulgaris HOM05D003221 ORTHO05D004432 6.9e-51 204.1 135 78.5
Lalb_Chr23g0273491 Lupinus albus HOM05D003221 ORTHO05D004432 6.9e-51 204.1 135 78.5
CDE04G0976 Ceratophyllum demersum HOM05D003221 ORTHO05D004432 9.0e-51 203.8 135 77.8
Os02g0600100 Oryza sativa ssp. japonica HOM05D003221 ORTHO05D004432 9.0e-51 203.8 135 77.8
Solyc07g009140.3 Solanum lycopersicum HOM05D003221 ORTHO05D004432 9.0e-51 203.8 134 79.1
Sopen07g017130 Solanum pennellii HOM05D003221 ORTHO05D004432 9.0e-51 203.8 134 79.1
PGSC0003DMG402024210 Solanum tuberosum HOM05D003221 ORTHO05D004432 9.0e-51 203.8 134 79.1
Gohir.A09G245000 Gossypium hirsutum HOM05D003221 ORTHO05D004432 1.2e-50 203.4 135 77.0
Ah.15g095310 Amaranthus hybridus HOM05D003221 ORTHO05D004432 2.0e-50 202.6 135 78.5
CAN.G5443.1 Capsicum annuum HOM05D003221 ORTHO05D004432 2.0e-50 202.6 121 86.8
PSO063G7046 Papaver somniferum HOM05D003221 ORTHO05D004432 2.0e-50 202.6 135 77.8
PSO170G4862 Papaver somniferum HOM05D003221 ORTHO05D004432 2.0e-50 202.6 135 77.8
PSO445G0024 Papaver somniferum HOM05D003221 ORTHO05D004432 2.0e-50 202.6 135 77.8
PSO782G0707 Papaver somniferum HOM05D003221 ORTHO05D004432 2.0e-50 202.6 135 77.8
Lalb_Chr08g0236971 Lupinus albus HOM05D003221 ORTHO05D004432 5.8e-50 201.1 135 77.8
Lj5g0004669 Lotus japonicus HOM05D003221 ORTHO05D004432 7.6e-50 200.7 135 78.5
Sc04g0000950 Simmondsia chinensis HOM05D003221 ORTHO05D004432 7.6e-50 200.7 135 75.6
Peaxi162Scf00324g00334 Petunia axillaris HOM05D003221 ORTHO05D004432 2.9e-49 198.7 135 75.6
Medtr8g464820 Medicago truncatula HOM05D003221 ORTHO05D004432 2.4e-48 195.7 135 77.0
AagrBONN_evm.TU.Sc2ySwM_344.2231 Anthoceros agrestis HOM05D003221 ORTHO05D004432 1.2e-47 193.4 135 74.8
Mapoly0014s0216 Marchantia polymorpha HOM05D003221 ORTHO05D004432 6.0e-47 191.0 135 73.3
Pp3c10_7470 Physcomitrium patens HOM05D003221 ORTHO05D004432 3.0e-46 188.7 135 71.9
SHI33980 Sapria himalayana HOM05D003221 ORTHO05D004432 3.9e-46 188.3 135 72.6
SMO118G0024 Selaginella moellendorffii HOM05D003221 ORTHO05D004432 2.5e-45 185.7 132 72.0
Pp3c12_14600 Physcomitrium patens HOM05D003221 ORTHO05D004432 1.6e-44 183.0 135 68.9
CSS0000638 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 1.5e-42 176.4 135 71.1
CBR_g40800 Chara braunii HOM05D003221 ORTHO05D004432 2.6e-42 175.6 136 66.9
CSS0006566 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 3.8e-41 171.8 121 76.0
CSS0035074 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 1.9e-40 169.5 122 74.6
CSS0000758 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 3.5e-39 165.2 118 74.6
CSS0004138 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 7.9e-39 164.1 135 65.9
TAR626G0734 Trochodendron aralioides HOM05D003221 ORTHO05D004432 3.0e-38 162.2 104 81.7
AagrBONN_evm.TU.Sc2ySwM_228.4449 Anthoceros agrestis HOM05D003221 ORTHO05D004432 5.1e-38 161.4 108 78.7
QL10p005029 Quercus lobata HOM05D003221 ORTHO05D004432 5.1e-38 161.4 135 65.9
MBI06_g43853_MAGBIO Magnolia biondii HOM05D003221 ORTHO05D004432 1.1e-37 160.2 135 65.2
Medtr8g046560 Medicago truncatula HOM05D003221 ORTHO05D004432 5.7e-37 157.9 135 68.9
CDE07G0656 Ceratophyllum demersum HOM05D003221 ORTHO05D004432 2.2e-33 146.0 135 61.5
Actinidia25611 Actinidia chinensis HOM05D003221 ORTHO05D004432 3.6e-31 138.7 135 59.3
MCO04G155 Micromonas commoda HOM05D003221 ORTHO05D004432 9.1e-27 124.0 135 49.6
vmacro01936 Vaccinium macrocarpon HOM05D003221 ORTHO05D004432 1.7e-25 119.8 136 54.4
CSS0042115 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 3.2e-24 115.5 67 89.6
PRCOL_00002590 Prasinoderma coloniale HOM05D003221 ORTHO05D004432 3.2e-24 115.5 135 45.9
Haze_26412 Corylus avellana HOM05D003221 ORTHO05D004432 5.1e-22 108.2 120 48.3
CARHR238350 Cardamine hirsuta HOM05D003221 ORTHO05D004432 1.5e-21 106.7 77 70.1
Cfa025062 Carpinus fangiana HOM05D003221 ORTHO05D122288 2.0e-18 96.3 134 37.3
Cre13.g581450 Chlamydomonas reinhardtii HOM05D003221 ORTHO05D004432 4.5e-18 95.1 128 39.8
SEGI_32179 Sequoiadendron giganteum HOM05D003221 ORTHO05D004432 6.5e-17 91.3 65 73.8
RcHm_v2.0_Chr5g0017921 Rosa chinensis HOM05D003221 ORTHO05D033910 5.2e-14 81.6 50 86.0
CSS0014635 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D033910 8.8e-14 80.9 47 89.4
FvH4_5g07210 Fragaria vesca HOM05D003221 ORTHO05D029578 2.6e-13 79.3 47 83.0
RcHm_v2.0_Chr5g0065961 Rosa chinensis HOM05D003221 ORTHO05D033910 2.6e-13 79.3 49 85.7
AUR62001280 Chenopodium quinoa HOM05D003221 ORTHO05D004432 4.4e-13 78.6 48 81.2
Pp3c4_2100 Physcomitrium patens HOM05D003221 ORTHO05D004432 5.3e-11 71.6 50 68.0
RcHm_v2.0_Chr7g0191041 Rosa chinensis HOM05D003221 ORTHO05D341823 1.0e-09 67.4 73 58.9


User provided reference genes

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