Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G011700 Carya illinoinensis HOM05D008121 ORTHO05D009878 1.2e-95 353.2 184 100.0
CiPaw.12G036100 Carya illinoinensis HOM05D008121 ORTHO05D009878 1.1e-51 207.2 182 63.7
Haze_07274 Corylus avellana HOM05D008121 ORTHO05D009878 8.7e-46 187.6 186 58.6
Cfa018889 Carpinus fangiana HOM05D008121 ORTHO05D009878 5.3e-43 178.3 194 55.7
QL10p005006 Quercus lobata HOM05D008121 ORTHO05D009878 8.2e-36 154.5 194 55.2
Prupe.5G156300 Prunus persica HOM05D008121 ORTHO05D009878 6.3e-28 128.3 200 43.5
Potri.015G091100 Populus trichocarpa HOM05D008121 ORTHO05D009878 1.4e-27 127.1 184 45.7
RcHm_v2.0_Chr7g0190901 Rosa chinensis HOM05D008121 ORTHO05D009878 2.0e-26 123.2 189 45.0
FvH4_5g07590 Fragaria vesca HOM05D008121 ORTHO05D009878 4.5e-26 122.1 191 46.1
Sabra15G0113100 Salix brachista HOM05D000290 ORTHO05D004630 1.8e-22 110.2 187 41.7
Manes.14G055100 Manihot esculenta HOM05D008121 ORTHO05D009878 5.1e-22 108.6 190 42.1
Cpa.g.sc4.77 Carica papaya HOM05D008121 ORTHO05D009878 7.4e-21 104.8 160 48.8
MD06G1149100 Malus domestica HOM05D008121 ORTHO05D009878 9.7e-21 104.4 209 40.7
FAN08G2628 Fragaria x ananassa HOM05D000290 ORTHO05D004630 1.1e-19 100.9 156 45.5
FAN04G1418 Fragaria x ananassa HOM05D000290 ORTHO05D004630 1.8e-19 100.1 190 41.6
Atru.chr9.1017 Acer truncatum HOM05D008121 ORTHO05D009878 1.2e-18 97.4 183 41.5
CSS0015443 Camellia sinensis var. sinensis HOM05D008121 ORTHO05D009878 3.4e-18 95.9 182 40.1
TWI14G0571 Tripterygium wilfordii HOM05D008121 ORTHO05D009878 4.5e-18 95.5 174 41.4
ClCG03G003530 Citrullus lanatus HOM05D008121 ORTHO05D009878 3.2e-16 89.4 185 40.5
CsaV3_1G009340 Cucumis sativus L. HOM05D008121 ORTHO05D009878 1.2e-15 87.4 187 41.2
MELO3C002337.2 Cucumis melo HOM05D008121 ORTHO05D009878 6.1e-15 85.1 191 39.3
Hma1.2p1_0014F.1_g009910 Hydrangea macrophylla HOM05D008121 ORTHO05D009878 7.9e-15 84.7 181 39.2
CANSAT80G0868 Cannabis sativa HOM05D008121 ORTHO05D009878 2.3e-14 83.2 190 38.4
Duzib084G1233 Durio zibethinus HOM05D008121 ORTHO05D009878 8.8e-14 81.3 167 38.3
Thecc.03G123300 Theobroma cacao HOM05D008121 ORTHO05D009878 4.4e-13 79.0 172 41.3
Sed0025515 Sechium edule HOM05D008121 ORTHO05D009878 5.7e-13 78.6 185 40.5
Gohir.D09G246100 Gossypium hirsutum HOM05D008121 ORTHO05D009878 9.7e-13 77.8 159 42.1
Gorai.006G270600 Gossypium raimondii HOM05D008121 ORTHO05D009878 1.3e-12 77.4 159 41.5
Eucgr.K02754 Eucalyptus grandis HOM05D011481 ORTHO05D009878 2.2e-12 76.6 182 35.2
Duzib205G1258 Durio zibethinus HOM05D008121 ORTHO05D009878 2.8e-12 76.3 179 38.5
FAN18G2983 Fragaria x ananassa HOM05D000290 ORTHO05D004630 2.8e-12 76.3 160 39.4
COL.COLO4_03517 Corchorus olitorius HOM05D008121 ORTHO05D009878 3.7e-12 75.9 180 37.8
Glyma.17G127300 Glycine max HOM05D008121 ORTHO05D009878 1.4e-11 73.9 183 33.9
Lj4g0024363 Lotus japonicus HOM05D008121 ORTHO05D009878 1.4e-11 73.9 145 42.1
GSVIVG01007536001 Vitis vinifera HOM05D008121 ORTHO05D009878 3.1e-11 72.8 171 37.4
arahy.Tifrunner.gnm1.ann1.YZZN9M Arachis hypogaea HOM05D008121 ORTHO05D009878 1.2e-10 70.9 184 35.9
Phvul.003G208400 Phaseolus vulgaris HOM05D008121 ORTHO05D009878 1.2e-10 70.9 175 35.4
arahy.Tifrunner.gnm1.ann1.DV5N5R Arachis hypogaea HOM05D008121 ORTHO05D009878 1.6e-10 70.5 184 35.9
Actinidia25609 Actinidia chinensis HOM05D008121 ORTHO05D009878 2.0e-10 70.1 154 38.3
Carub.0005s1467 Capsella rubella HOM05D011481 ORTHO05D009878 2.0e-10 70.1 133 42.1
Rhsim08G0185200 Rhododendron simsii HOM05D000290 ORTHO05D004630 3.5e-10 69.3 169 36.1
EL10Ac7g18085 Beta vulgaris HOM05D008121 ORTHO05D009878 4.5e-10 68.9 157 43.3
BcaC07g39334 Brassica carinata HOM05D011481 ORTHO05D009878 7.7e-10 68.2 133 38.3
C08p23500 Brassica napus HOM05D011481 ORTHO05D009878 7.7e-10 68.2 133 38.3
BolC8t49978H Brassica oleracea HOM05D011481 ORTHO05D009878 7.7e-10 68.2 133 38.3
Gohir.A09G245200 Gossypium hirsutum HOM05D008121 ORTHO05D009878 1.0e-09 67.8 159 39.6
Glyma.05G045100 Glycine max HOM05D008121 ORTHO05D009878 1.7e-09 67.0 157 34.4
Dinv38465 Davidia involucrata HOM05D008121 ORTHO05D009878 2.2e-09 66.6 164 37.2
AT3G48490 Arabidopsis thaliana HOM05D011481 ORTHO05D009878 2.9e-09 66.2 133 39.1
Migut.I00480 Erythranthe guttata HOM05D008121 ORTHO05D009878 2.9e-09 66.2 151 35.8
AL5G27920 Arabidopsis lyrata HOM05D011481 ORTHO05D009878 3.8e-09 65.9 134 38.8
A06p19190 Brassica napus HOM05D011481 ORTHO05D009878 3.8e-09 65.9 133 37.6
BraA06t25002Z Brassica rapa HOM05D011481 ORTHO05D009878 3.8e-09 65.9 133 37.6
PGR044G1447 Punica granatum HOM05D011481 ORTHO05D009878 3.8e-09 65.9 180 30.6
SGA_v2.0_scaffold161G37821 Striga asiatica HOM05D008121 ORTHO05D009878 3.8e-09 65.9 136 37.5
Cc04_g10260 Coffea canephora HOM05D008121 ORTHO05D009878 5.0e-09 65.5 183 32.8
Lalb_Chr13g0297421 Lupinus albus HOM05D008121 ORTHO05D009878 5.0e-09 65.5 133 39.1
Dinv02922 Davidia involucrata HOM05D008121 ORTHO05D009878 8.5e-09 64.7 164 37.2
PGSC0003DMG400015199 Solanum tuberosum HOM05D008121 ORTHO05D009878 8.5e-09 64.7 181 32.0
BcaB01g00807 Brassica carinata HOM05D011481 ORTHO05D009878 1.1e-08 64.3 133 36.8
Solyc03g110980.4 Solanum lycopersicum HOM05D008121 ORTHO05D009878 1.1e-08 64.3 181 32.6
THA.LOC104821506 Tarenaya hassleriana HOM05D011481 ORTHO05D009878 1.1e-08 64.3 135 34.1
Sopen03g030170 Solanum pennellii HOM05D008121 ORTHO05D009878 1.5e-08 63.9 181 32.6
CAN.G352.52 Capsicum annuum HOM05D008121 ORTHO05D009878 2.5e-08 63.2 181 32.0
VMungo1215G2720 Vigna mungo HOM05D000290 ORTHO05D004630 3.2e-08 62.8 175 35.4
Ciclev10023121m.g Citrus clementina HOM05D008121 ORTHO05D009878 4.2e-08 62.4 54 63.0
Ciclev10024026m.g Citrus clementina HOM05D008121 ORTHO05D009878 4.2e-08 62.4 54 63.0
Psat4g064880 Pisum sativum HOM05D008121 ORTHO05D009878 4.2e-08 62.4 165 39.4
vmacro19236 Vaccinium macrocarpon HOM05D008121 ORTHO05D009878 5.5e-08 62.0 154 33.8
DCAR_026211 Daucus carota HOM05D008121 ORTHO05D009878 7.2e-08 61.6 156 34.6
Oeu018378.1 Olea europaea HOM05D008121 ORTHO05D009878 9.4e-08 61.2 147 36.7
TPR.G37567 Trifolium pratense HOM05D008121 ORTHO05D009878 9.4e-08 61.2 141 40.4
MSTRG.22918 Avicennia marina HOM05D008121 ORTHO05D009878 1.2e-07 60.8 162 34.0
AUR62001288 Chenopodium quinoa HOM05D008121 ORTHO05D009878 1.2e-07 60.8 164 36.0
Ah.15g095290 Amaranthus hybridus HOM05D001185 ORTHO05D002551 1.6e-07 60.5 135 42.2
Nitab4.5_0005418g0010 Nicotiana tabacum HOM05D008121 ORTHO05D009878 1.6e-07 60.5 183 32.2
Aa31LG4G17080 Aethionema arabicum HOM05D011481 ORTHO05D009878 2.7e-07 59.7 133 36.8
Nitab4.5_0005327g0050 Nicotiana tabacum HOM05D008121 ORTHO05D009878 2.7e-07 59.7 176 31.8
Medtr4g104040 Medicago truncatula HOM05D008121 ORTHO05D009878 4.7e-07 58.9 150 36.7
HanXRQChr09g0272891 Helianthus annuus HOM05D008121 ORTHO05D009878 1.4e-06 57.4 161 36.0
Nn4g22451 Nelumbo nucifera HOM05D008121 ORTHO05D009878 1.4e-06 57.4 84 44.0
Hund05652 Selenicereus undatus HOM05D008121 ORTHO05D009878 1.8e-06 57.0 50 70.0
Ca_05561_v3 Cicer arietinum L. HOM05D008121 ORTHO05D009878 3.0e-06 56.2 174 37.4
ECA232G1254 Erigeron canadensis HOM05D008121 ORTHO05D009878 6.7e-06 55.1 135 37.0


User provided reference genes

Program Settings