Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G009100 Carya illinoinensis HOM05D005613 ORTHO05D006903 2.1e-171 605.5 293 100.0
PGR044G0561 Punica granatum HOM05D005613 ORTHO05D006903 1.5e-148 529.6 293 86.7
Manes.06G118100 Manihot esculenta HOM05D005613 ORTHO05D006903 2.8e-147 525.4 295 85.4
Manes.14G052800 Manihot esculenta HOM05D005613 ORTHO05D006903 3.7e-147 525.0 295 85.8
Haze_07235 Corylus avellana HOM05D005613 ORTHO05D006903 2.4e-146 522.3 322 82.0
Dinv11157 Davidia involucrata HOM05D005613 ORTHO05D006903 2.4e-146 522.3 295 85.4
Potri.015G093500 Populus trichocarpa HOM05D005613 ORTHO05D006903 3.1e-146 521.9 295 85.1
CSS0000406 Camellia sinensis var. sinensis HOM05D005613 ORTHO05D006903 4.0e-146 521.5 278 89.2
Eucgr.K02737 Eucalyptus grandis HOM05D005613 ORTHO05D006903 1.5e-145 519.6 280 88.9
TWI39G1237 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 3.4e-145 518.5 295 84.1
Thecc.03G126700 Theobroma cacao HOM05D005613 ORTHO05D006903 5.8e-145 517.7 292 85.3
Prupe.5G152900 Prunus persica HOM05D005613 ORTHO05D006903 7.6e-145 517.3 278 88.1
TWI23G0755 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 4.9e-144 514.6 295 84.1
Actinidia15836 Actinidia chinensis HOM05D005613 ORTHO05D006903 6.5e-144 514.2 277 88.1
MD06G1143700 Malus domestica HOM05D005613 ORTHO05D006903 8.4e-144 513.8 289 85.1
TAR371G0420 Trochodendron aralioides HOM05D005613 ORTHO05D006903 1.1e-143 513.5 295 82.7
Lj1g0013310 Lotus japonicus HOM05D005613 ORTHO05D006903 1.9e-143 512.7 284 87.3
MD14G1159000 Malus domestica HOM05D005613 ORTHO05D006903 1.9e-143 512.7 292 84.6
Glyma.04G194500 Glycine max HOM05D005613 ORTHO05D006903 7.1e-143 510.8 280 86.4
Duzib205G1234 Durio zibethinus HOM05D005613 ORTHO05D006903 2.1e-142 509.2 292 83.9
Ciclev10021465m.g Citrus clementina HOM05D005613 ORTHO05D006903 2.7e-142 508.8 284 85.2
CANSAT80G2472 Cannabis sativa HOM05D005613 ORTHO05D006903 3.5e-142 508.4 295 82.7
Phvul.009G167500 Phaseolus vulgaris HOM05D005613 ORTHO05D006903 3.5e-142 508.4 284 85.6
Glyma.06G171500 Glycine max HOM05D005613 ORTHO05D006903 4.6e-142 508.1 282 85.8
Medtr3g089010 Medicago truncatula HOM05D005613 ORTHO05D006903 4.6e-142 508.1 291 85.2
QL10p004130 Quercus lobata HOM05D005613 ORTHO05D006903 4.6e-142 508.1 283 86.6
GSVIVG01008514001 Vitis vinifera HOM05D005613 ORTHO05D006903 7.9e-142 507.3 288 85.1
Gohir.D07G056300 Gossypium hirsutum HOM05D005613 ORTHO05D006903 1.0e-141 506.9 277 86.3
Gorai.001G059700 Gossypium raimondii HOM05D005613 ORTHO05D006903 1.0e-141 506.9 277 86.3
Gohir.A07G051800 Gossypium hirsutum HOM05D005613 ORTHO05D006903 1.3e-141 506.5 277 86.6
QL10p004191 Quercus lobata HOM05D005613 ORTHO05D006903 1.8e-141 506.1 283 86.2
PSO017G2706 Papaver somniferum HOM05D005613 ORTHO05D006903 5.1e-141 504.6 288 84.4
Psat5g169720 Pisum sativum HOM05D005613 ORTHO05D006903 4.3e-140 501.5 284 85.9
RcHm_v2.0_Chr7g0190451 Rosa chinensis HOM05D005613 ORTHO05D006903 5.7e-140 501.1 295 82.0
Aqoxy5G04126 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 1.3e-139 500.0 285 82.8
MSTRG.17588 Avicennia marina HOM05D005613 ORTHO05D006903 6.3e-139 497.7 291 81.8
TPR.G26132 Trifolium pratense HOM05D005613 ORTHO05D006903 1.1e-138 496.9 315 79.0
PSO478G0845 Papaver somniferum HOM05D005613 ORTHO05D006903 5.3e-138 494.6 288 83.0
Lalb_Chr11g0069651 Lupinus albus HOM05D005613 ORTHO05D006903 9.0e-138 493.8 295 79.7
VMungo1309G0937 Vigna mungo HOM05D005613 ORTHO05D006903 1.5e-137 493.0 265 88.7
THA.LOC104803145 Tarenaya hassleriana HOM05D005613 ORTHO05D006903 4.5e-137 491.5 287 80.1
PSO017G3077 Papaver somniferum HOM05D005613 ORTHO05D006903 1.0e-136 490.3 272 85.3
PSO675G0985 Papaver somniferum HOM05D005613 ORTHO05D006903 1.3e-136 490.0 272 85.7
MELO3C002354.2 Cucumis melo HOM05D005613 ORTHO05D006903 1.7e-136 489.6 281 81.9
CsaV3_1G009570 Cucumis sativus L. HOM05D005613 ORTHO05D006903 2.9e-136 488.8 281 81.9
FvH4_5g07950 Fragaria vesca HOM05D005613 ORTHO05D006903 1.1e-135 486.9 288 80.9
Migut.N02308 Erythranthe guttata HOM05D005613 ORTHO05D006903 1.9e-135 486.1 291 81.1
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 2.5e-135 485.7 309 78.0
CAN.G767.35 Capsicum annuum HOM05D005613 ORTHO05D006903 1.2e-134 483.4 283 78.1
Actinidia25589 Actinidia chinensis HOM05D005613 ORTHO05D006903 1.6e-134 483.0 260 89.2
Lsat_1_v5_gn_4_76740 Lactuca sativa HOM05D005613 ORTHO05D006903 1.6e-134 483.0 288 81.6
SalBow7G2516 Salvia bowleyana HOM05D005613 ORTHO05D006903 2.7e-134 482.3 279 82.1
Lj9C477T8 Lonicera japonica HOM05D005613 ORTHO05D006903 3.6e-134 481.9 288 83.3
AL8G24500 Arabidopsis lyrata HOM05D005613 ORTHO05D006903 1.0e-133 480.3 271 82.7
AT5G50375 Arabidopsis thaliana HOM05D005613 ORTHO05D006903 1.4e-133 479.9 277 81.2
HanXRQChr09g0273061 Helianthus annuus HOM05D005613 ORTHO05D006903 1.8e-133 479.6 289 81.0
Sed0021273 Sechium edule HOM05D005613 ORTHO05D006903 1.8e-133 479.6 274 82.1
CARHR258110 Cardamine hirsuta HOM05D005613 ORTHO05D006903 3.0e-133 478.8 271 81.9
Cc07_g17610 Coffea canephora HOM05D005613 ORTHO05D006903 3.9e-133 478.4 270 81.9
Aa31LG3G6910 Aethionema arabicum HOM05D005613 ORTHO05D006903 5.1e-133 478.0 271 83.8
Sabra15G0115100 Salix brachista HOM05D005613 ORTHO05D006903 6.7e-133 477.6 306 77.1
Carub.0008s1047 Capsella rubella HOM05D005613 ORTHO05D006903 8.8e-133 477.2 278 80.2
ECA232G4063 Erigeron canadensis HOM05D005613 ORTHO05D006903 1.5e-132 476.5 272 83.1
Nitab4.5_0007541g0020 Nicotiana tabacum HOM05D005613 ORTHO05D006903 1.5e-132 476.5 287 78.0
Nitab4.5_0011040g0030 Nicotiana tabacum HOM05D005613 ORTHO05D006903 1.5e-132 476.5 281 78.6
SpUn0050_0040 Schrenkiella parvula HOM05D005613 ORTHO05D006903 2.5e-132 475.7 280 80.4
Cc00_g03610 Coffea canephora HOM05D005613 ORTHO05D006903 3.3e-132 475.3 272 81.2
ClCG03G003690 Citrullus lanatus HOM05D005613 ORTHO05D006903 4.3e-132 474.9 322 72.0
Hund02427 Selenicereus undatus HOM05D005613 ORTHO05D006903 4.3e-132 474.9 294 76.2
Sed0001462 Sechium edule HOM05D005613 ORTHO05D006903 5.7e-132 474.6 284 79.9
Solyc12g098640.3 Solanum lycopersicum HOM05D005613 ORTHO05D006903 7.4e-132 474.2 275 79.6
BcaC01g04807 Brassica carinata HOM05D005613 ORTHO05D006903 1.3e-131 473.4 271 82.3
PGSC0003DMG400004674 Solanum tuberosum HOM05D005613 ORTHO05D006903 1.3e-131 473.4 271 79.7
BcaB01g02892 Brassica carinata HOM05D005613 ORTHO05D006903 2.8e-131 472.2 275 81.1
EL10Ac5g11023 Beta vulgaris HOM05D005613 ORTHO05D006903 3.7e-131 471.9 271 82.3
Sopen12g033400 Solanum pennellii HOM05D005613 ORTHO05D006903 3.7e-131 471.9 271 80.1
Thhalv10014300m.g Eutrema salsugineum HOM05D005613 ORTHO05D006903 4.8e-131 471.5 282 79.1
Rhsim08G0188600 Rhododendron simsii HOM05D005613 ORTHO05D006903 1.4e-130 469.9 272 83.8
C03p33570 Brassica napus HOM05D005613 ORTHO05D006903 1.8e-130 469.5 273 82.1
Peaxi162Scf00378g00519 Petunia axillaris HOM05D005613 ORTHO05D006903 5.3e-130 468.0 287 76.0
AUR62032039 Chenopodium quinoa HOM05D005613 ORTHO05D006903 6.9e-130 467.6 271 82.3
BolC3t15677H Brassica oleracea HOM05D005613 ORTHO05D006903 9.1e-130 467.2 279 80.3
arahy.Tifrunner.gnm1.ann1.AY81KB Arachis hypogaea HOM05D005613 ORTHO05D006903 1.5e-129 466.5 290 80.0
A03p27830 Brassica napus HOM05D005613 ORTHO05D006903 1.5e-129 466.5 278 80.2
FAN13G2894 Fragaria x ananassa HOM05D005613 ORTHO05D006903 1.5e-129 466.5 295 76.9
BraA03t11994Z Brassica rapa HOM05D005613 ORTHO05D006903 3.4e-129 465.3 284 78.5
Zm00001eb265520 Zea mays HOM05D005613 ORTHO05D006903 6.1e-126 454.5 279 78.5
DCAR_016405 Daucus carota HOM05D005613 ORTHO05D006903 1.8e-125 453.0 286 76.6
unitig_27.g24986 Utricularia gibba HOM05D005613 ORTHO05D006903 3.9e-125 451.8 284 73.9
DCAR_021614 Daucus carota HOM05D005613 ORTHO05D006903 6.7e-125 451.1 283 75.6
Dinv04871 Davidia involucrata HOM05D005613 ORTHO05D006903 6.7e-125 451.1 297 77.1
A09p55960 Brassica napus HOM05D005613 ORTHO05D006903 1.1e-124 450.3 273 78.4
BraA09t40998Z Brassica rapa HOM05D005613 ORTHO05D006903 1.1e-124 450.3 273 78.4
FAN18G4059 Fragaria x ananassa HOM05D005613 ORTHO05D006903 7.4e-124 447.6 328 68.9
C08p38940 Brassica napus HOM05D005613 ORTHO05D006903 1.1e-122 443.7 271 76.8
BolC8t51467H Brassica oleracea HOM05D005613 ORTHO05D006903 3.1e-122 442.2 271 76.8
BcaB08g35134 Brassica carinata HOM05D005613 ORTHO05D006903 4.1e-122 441.8 271 76.8
CDE02G3999 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 1.5e-121 439.9 273 76.9
Nn4g22373 Nelumbo nucifera HOM05D005613 ORTHO05D006903 6.5e-120 434.5 287 73.9
SEGI_09495 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 4.2e-119 431.8 278 71.6
vmacro19214 Vaccinium macrocarpon HOM05D005613 ORTHO05D006903 1.2e-118 430.3 374 62.3
ATR0680G053 Amborella trichopoda HOM05D005613 ORTHO05D006903 1.4e-117 426.8 273 72.5
arahy.Tifrunner.gnm1.ann1.LN4RIT Arachis hypogaea HOM05D005613 ORTHO05D006903 3.0e-117 425.6 242 84.7
FAN08G1682 Fragaria x ananassa HOM05D005613 ORTHO05D006903 1.1e-116 423.7 323 67.5
BcaC07g40897 Brassica carinata HOM05D005613 ORTHO05D006903 7.4e-116 421.0 275 73.5
unitig_699.g19129 Utricularia gibba HOM05D005613 ORTHO05D006903 1.6e-113 413.3 269 71.7
Cpa.g.sc13.142 Carica papaya HOM05D005613 ORTHO05D006903 5.0e-112 408.3 220 88.2
COL.COLO4_28085 Corchorus olitorius HOM05D005613 ORTHO05D006903 7.5e-108 394.4 223 83.9
AUR62036512 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.1e-106 390.6 238 79.0
CiPaw.12G041000 Carya illinoinensis HOM05D005613 ORTHO05D006903 6.5e-104 381.3 199 93.0
CDE09G1331 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 6.5e-104 381.3 273 69.2
Aqoxy22s001 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 2.5e-103 379.4 198 89.9
BcaB05g24059 Brassica carinata HOM05D005613 ORTHO05D006903 1.8e-101 373.2 289 66.1
SMO180G0005 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 3.1e-98 362.5 273 59.7
SpUn0508_0010 Schrenkiella parvula HOM05D005613 ORTHO05D006903 7.0e-98 361.3 210 81.0
Mapoly0019s0004 Marchantia polymorpha HOM05D005613 ORTHO05D006903 2.1e-94 349.7 293 57.7
Aqoxy1G01617 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 8.9e-93 344.4 228 74.1
Pp3c14_22450 Physcomitrium patens HOM05D005613 ORTHO05D006903 8.9e-93 344.4 278 59.0
SHI39270 Sapria himalayana HOM05D005613 ORTHO05D006903 4.5e-89 332.0 189 83.6
SHI42710 Sapria himalayana HOM05D005613 ORTHO05D006903 4.5e-89 332.0 189 83.6
AUR62032713 Chenopodium quinoa HOM05D005613 ORTHO05D006903 3.3e-79 299.3 226 68.6
AagrBONN_evm.TU.Sc2ySwM_362.2466 Anthoceros agrestis HOM05D005613 ORTHO05D006903 2.8e-78 296.2 226 61.5
Cre16.g657300 Chlamydomonas reinhardtii HOM05D005613 ORTHO05D006903 2.9e-75 286.2 269 52.8
SGA_v2.0_scaffold42G16110 Striga asiatica HOM05D005613 ORTHO05D006903 5.1e-72 275.4 311 52.1
HPP92_006202 Vanilla planifolia HOM05D005613 ORTHO05D006903 2.9e-67 259.6 156 81.4
AagrBONN_evm.TU.Sc2ySwM_117.1130 Anthoceros agrestis HOM05D005613 ORTHO05D006903 1.1e-66 257.7 188 62.8
SGA_v2.0_scaffold115G32075 Striga asiatica HOM05D005613 ORTHO05D006903 2.3e-64 250.0 151 78.1
CBR_g48821 Chara braunii HOM05D005613 ORTHO05D006903 5.4e-58 228.8 210 50.5
SMO353G0009 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 3.5e-57 226.1 263 46.8
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 5.6e-55 218.8 131 78.6
SGA_v2.0_scaffold115G32072 Striga asiatica HOM05D000001 ORTHO05D000003 3.5e-49 199.5 253 45.8
PRCOL_00007276 Prasinoderma coloniale HOM05D005613 ORTHO05D006903 1.9e-39 167.2 272 39.0
HPP92_006201 Vanilla planifolia HOM05D005613 ORTHO05D006903 1.9e-39 167.2 96 78.1
MCO03G530 Micromonas commoda HOM05D005613 ORTHO05D006903 1.1e-37 161.4 211 40.3
SGA_v2.0_scaffold3G01513 Striga asiatica HOM05D005613 ORTHO05D006903 5.7e-31 139.0 118 60.2
Os11g0302500 Oryza sativa ssp. japonica HOM05D005613 ORTHO05D006903 1.3e-30 137.9 85 72.9
CBR_g48823 Chara braunii HOM05D005613 ORTHO05D006903 7.9e-17 92.0 78 56.4
SEGI_05867 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 1.4e-13 81.3 47 74.5
arahy.Tifrunner.gnm1.ann1.W1BQBA Arachis hypogaea HOM05D005613 ORTHO05D006903 3.1e-13 80.1 45 77.8


User provided reference genes

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