Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G006800 Carya illinoinensis HOM05D005804 ORTHO05D006849 1.5e-305 1052.0 527 100.0
QL10p002869 Quercus lobata HOM05D005804 ORTHO05D006849 2.3e-184 649.4 422 75.4
Haze_07141 Corylus avellana HOM05D005804 ORTHO05D006849 1.3e-179 633.6 446 71.5
Cfa018793 Carpinus fangiana HOM05D005804 ORTHO05D006849 1.2e-172 610.5 474 66.9
Prupe.5G150700 Prunus persica HOM05D005804 ORTHO05D006849 2.4e-149 533.1 431 64.0
Psat5g051400 Pisum sativum HOM05D005804 ORTHO05D006849 4.9e-142 508.8 428 61.2
Lalb_Chr11g0069551 Lupinus albus HOM05D005804 ORTHO05D006849 2.7e-140 503.1 462 58.2
TPR.G14211 Trifolium pratense HOM05D005804 ORTHO05D006849 3.5e-140 502.7 429 60.4
GSVIVG01008547001 Vitis vinifera HOM05D005804 ORTHO05D006849 1.3e-139 500.7 452 59.1
Thecc.03G129500 Theobroma cacao HOM05D005804 ORTHO05D006849 2.5e-138 496.5 443 59.6
Ca_16047_v3 Cicer arietinum L. HOM05D005804 ORTHO05D006849 1.6e-137 493.8 427 59.5
MD14G1156600 Malus domestica HOM05D005804 ORTHO05D006849 6.2e-137 491.9 431 60.1
Medtr3g099220 Medicago truncatula HOM05D005804 ORTHO05D006849 8.1e-137 491.5 424 61.1
Dinv23150 Davidia involucrata HOM05D005804 ORTHO05D006849 2.0e-135 486.9 426 61.5
Medtr2g045240 Medicago truncatula HOM05D005804 ORTHO05D006849 1.7e-134 483.8 419 60.9
Medtr2g045245 Medicago truncatula HOM05D005804 ORTHO05D006849 1.7e-134 483.8 419 60.9
Gorai.001G058800 Gossypium raimondii HOM05D005804 ORTHO05D006849 3.2e-133 479.6 429 57.1
Duzib205G0351 Durio zibethinus HOM05D005804 ORTHO05D006849 5.4e-133 478.8 458 54.4
COL.COLO4_28132 Corchorus olitorius HOM05D005804 ORTHO05D006849 9.2e-133 478.0 423 57.2
Lj1g0008882 Lotus japonicus HOM05D005804 ORTHO05D006849 1.1e-128 464.5 428 59.3
TWI23G1188 Tripterygium wilfordii HOM05D005804 ORTHO05D006849 1.4e-128 464.2 434 56.2
Cpa.g.sc13.112 Carica papaya HOM05D005804 ORTHO05D006849 3.4e-127 459.5 458 52.8
Hma1.2p1_0014F.1_g009390 Hydrangea macrophylla HOM05D005804 ORTHO05D006849 5.8e-127 458.8 429 57.8
TAR629G0711 Trochodendron aralioides HOM05D005804 ORTHO05D006849 1.1e-125 454.5 441 57.6
FAN13G2030 Fragaria x ananassa HOM05D005804 ORTHO05D006849 2.4e-125 453.4 429 56.4
FAN08G1998 Fragaria x ananassa HOM05D005804 ORTHO05D006849 1.0e-123 448.0 422 55.7
arahy.Tifrunner.gnm1.ann1.489AYV Arachis hypogaea HOM05D005804 ORTHO05D006849 5.1e-123 445.7 441 56.7
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 2.5e-122 443.4 431 56.6
FvH4_5g08360 Fragaria vesca HOM05D005804 ORTHO05D006849 3.3e-122 443.0 430 55.6
arahy.Tifrunner.gnm1.ann1.Y2QIS7 Arachis hypogaea HOM05D005804 ORTHO05D006849 4.3e-122 442.6 420 58.3
CsaV3_1G009670 Cucumis sativus L. HOM05D005804 ORTHO05D006849 1.6e-121 440.7 434 54.6
arahy.Tifrunner.gnm1.ann1.PR501J Arachis hypogaea HOM05D005804 ORTHO05D006849 3.6e-121 439.5 441 54.2
FAN04G2797 Fragaria x ananassa HOM05D005804 ORTHO05D006849 3.6e-121 439.5 429 54.8
ClCG03G003790 Citrullus lanatus HOM05D005804 ORTHO05D006849 1.4e-120 437.6 443 53.3
FAN18G4115 Fragaria x ananassa HOM05D005804 ORTHO05D006849 1.4e-120 437.6 425 55.5
Rhsim12G0175100 Rhododendron simsii HOM05D005804 ORTHO05D006849 8.4e-118 428.3 477 52.0
THA.LOC104825017 Tarenaya hassleriana HOM05D005804 ORTHO05D006849 7.1e-117 425.2 433 52.0
CANSAT80G2783 Cannabis sativa HOM05D005804 ORTHO05D006849 7.9e-116 421.8 400 55.8
MD06G1141400 Malus domestica HOM05D005804 ORTHO05D006849 1.7e-115 420.6 376 59.3
VMungo1309G0122 Vigna mungo HOM05D005804 ORTHO05D006849 1.9e-114 417.2 427 53.6
Ciclev10031832m.g Citrus clementina HOM05D005804 ORTHO05D006849 2.5e-114 416.8 425 53.9
arahy.Tifrunner.gnm1.ann1.I073XK Arachis hypogaea HOM05D005804 ORTHO05D006849 3.3e-114 416.4 422 54.3
Aqoxy5G03360 Aquilegia oxysepala HOM05D005804 ORTHO05D006849 1.1e-112 411.4 438 51.4
MELO3C002363.2 Cucumis melo HOM05D005804 ORTHO05D006849 2.0e-111 407.1 430 53.3
AL7G28300 Arabidopsis lyrata HOM05D005804 ORTHO05D006849 1.3e-110 404.4 433 51.3
AT4G24900 Arabidopsis thaliana HOM05D005804 ORTHO05D006849 2.1e-108 397.1 432 50.7
Atru.chr12.1219 Acer truncatum HOM05D005804 ORTHO05D006849 4.6e-108 396.0 439 49.9
DCAR_007491 Daucus carota HOM05D005804 ORTHO05D006849 3.9e-107 392.9 421 50.8
HanXRQChr13g0408711 Helianthus annuus HOM05D005804 ORTHO05D006849 8.7e-107 391.7 426 50.5
Cc04_g08810 Coffea canephora HOM05D005804 ORTHO05D006849 1.6e-105 387.5 435 51.0
Oeu058729.2 Olea europaea HOM05D005804 ORTHO05D006849 2.8e-105 386.7 474 46.6
Sc22g0003840 Simmondsia chinensis HOM05D005804 ORTHO05D006849 6.2e-105 385.6 437 48.3
Atru.chr6.1796 Acer truncatum HOM05D005804 ORTHO05D006849 2.4e-104 383.6 431 50.3
PSO478G1623 Papaver somniferum HOM05D005804 ORTHO05D006849 3.1e-104 383.3 446 49.8
Aa31LG7G10880 Aethionema arabicum HOM05D005804 ORTHO05D006849 4.5e-103 379.4 429 49.0
Hund02443 Selenicereus undatus HOM05D005804 ORTHO05D006849 1.9e-101 374.0 427 48.9
Sp7g22880 Schrenkiella parvula HOM05D005804 ORTHO05D006849 9.3e-101 371.7 428 48.6
Lj9A479T55 Lonicera japonica HOM05D005804 ORTHO05D006849 1.0e-99 368.2 405 52.1
SGA_v2.0_scaffold164G38120 Striga asiatica HOM05D005804 ORTHO05D006849 1.8e-99 367.5 457 44.6
Migut.O00254 Erythranthe guttata HOM05D005804 ORTHO05D006849 2.3e-99 367.1 429 46.4
Peaxi162Scf00171g00421 Petunia axillaris HOM05D005804 ORTHO05D006849 3.0e-99 366.7 434 46.3
Lsat_1_v5_gn_1_33221 Lactuca sativa HOM05D005804 ORTHO05D006849 8.7e-99 365.2 462 47.8
Thhalv10025155m.g Eutrema salsugineum HOM05D005804 ORTHO05D006849 2.1e-97 360.5 440 45.9
MBI11_g05331_MAGBIO Magnolia biondii HOM05D005804 ORTHO05D006849 1.1e-96 358.2 413 51.3
Nitab4.5_0010950g0010 Nicotiana tabacum HOM05D005804 ORTHO05D006849 1.1e-96 358.2 437 45.8
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 1.5e-95 354.4 420 46.9
Solyc03g098330.2 Solanum lycopersicum HOM05D005804 ORTHO05D006849 2.6e-95 353.6 427 44.7
Sopen03g029080 Solanum pennellii HOM05D005804 ORTHO05D006849 1.0e-94 351.7 421 44.9
Glyma.06G170000 Glycine max HOM05D005804 ORTHO05D006849 2.5e-93 347.1 421 47.5
SHI10578 Sapria himalayana HOM05D005804 ORTHO05D006849 3.5e-92 343.2 433 44.8
PGSC0003DMG400025629 Solanum tuberosum HOM05D005804 ORTHO05D006849 4.6e-92 342.8 420 44.3
SalBow8G2935 Salvia bowleyana HOM05D005804 ORTHO05D006849 8.7e-91 338.6 441 44.9
BcaNung06008 Brassica carinata HOM05D005804 ORTHO05D006849 5.3e-88 329.3 444 44.1
Ah.02g114880 Amaranthus hybridus HOM05D005804 ORTHO05D006849 8.8e-83 312.0 425 44.5
Sed0001636 Sechium edule HOM05D005804 ORTHO05D006849 1.5e-82 311.2 429 45.2
BraA01t01555Z Brassica rapa HOM05D005804 ORTHO05D006849 4.3e-82 309.7 442 42.5
BcaC09g52237 Brassica carinata HOM05D005804 ORTHO05D006849 5.7e-82 309.3 448 43.1
BolC1t01947H Brassica oleracea HOM05D005804 ORTHO05D006849 9.7e-82 308.5 449 42.8
A01p16190 Brassica napus HOM05D005804 ORTHO05D006849 1.7e-81 307.8 442 42.1
AUR62029607 Chenopodium quinoa HOM05D005804 ORTHO05D006849 8.2e-81 305.4 408 44.1
C01p20180 Brassica napus HOM05D005804 ORTHO05D006849 3.1e-80 303.5 440 42.5
Potri.012G098000 Populus trichocarpa HOM05D005804 ORTHO05D006849 5.3e-80 302.8 252 57.9
EL10Ac5g11407 Beta vulgaris HOM05D005804 ORTHO05D006849 1.2e-79 301.6 527 38.9
HPP92_013611 Vanilla planifolia HOM05D005804 ORTHO05D006849 9.4e-77 292.0 432 39.4
CSS0001147 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 1.5e-74 284.6 213 65.7
Actinidia08874 Actinidia chinensis HOM05D005804 ORTHO05D006849 4.4e-74 283.1 271 55.7
Manes.14G051101 Manihot esculenta HOM05D005804 ORTHO05D006849 1.3e-73 281.6 233 58.4
unitig_26.g9610 Utricularia gibba HOM05D005804 ORTHO05D006849 1.5e-71 274.6 443 39.3
RcHm_v2.0_Chr7g0190091 Rosa chinensis HOM05D005804 ORTHO05D006849 1.0e-70 271.9 262 57.3
Eucgr.K02724 Eucalyptus grandis HOM05D005804 ORTHO05D006849 1.1e-69 268.5 320 46.6
Zm00001eb102430 Zea mays HOM05D005804 ORTHO05D006849 2.0e-66 257.7 429 39.4
SEGI_29979 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 1.2e-60 238.4 450 33.6
Nitab4.5_0001180g0250 Nicotiana tabacum HOM05D005804 ORTHO05D006849 2.1e-60 237.7 326 42.0
ECA247G1629 Erigeron canadensis HOM05D005804 ORTHO05D006849 3.6e-60 236.9 322 46.3
Dinv11177 Davidia involucrata HOM05D005804 ORTHO05D006849 2.3e-59 234.2 263 53.2
Gohir.A07G051132 Gossypium hirsutum HOM05D005804 ORTHO05D006849 2.9e-54 217.2 158 61.4
Gohir.D07G055466 Gossypium hirsutum HOM05D005804 ORTHO05D006849 8.5e-54 215.7 158 69.6
Gohir.A07G051066 Gossypium hirsutum HOM05D005804 ORTHO05D006849 2.5e-53 214.2 158 69.6
Phvul.009G166301 Phaseolus vulgaris HOM05D005804 ORTHO05D006849 1.2e-52 211.8 174 60.3
Carub.0007s1617 Capsella rubella HOM05D005804 ORTHO05D006849 6.1e-52 209.5 149 65.8
RcHm_v2.0_Chr7g0190081 Rosa chinensis HOM05D005804 ORTHO05D006849 8.0e-52 209.1 199 56.8
Gohir.D07G055532 Gossypium hirsutum HOM05D005804 ORTHO05D006849 1.4e-51 208.4 154 59.7
CSS0012660 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 9.8e-50 202.2 162 64.2
Manes.14G051001 Manihot esculenta HOM05D005804 ORTHO05D006849 1.1e-48 198.7 159 66.7
Medtr2g045235 Medicago truncatula HOM05D005804 ORTHO05D006849 1.8e-48 198.0 169 63.9
Lalb_Chr08g0237201 Lupinus albus HOM05D005804 ORTHO05D006849 2.0e-47 194.5 170 64.1
Os09g0506900 Oryza sativa ssp. japonica HOM05D005804 ORTHO05D006849 2.7e-47 194.1 187 49.7
Lalb_Chr08g0237181 Lupinus albus HOM05D005804 ORTHO05D006849 3.5e-47 193.7 127 67.7
CDE05G3468 Ceratophyllum demersum HOM05D005804 ORTHO05D006849 8.6e-46 189.1 300 42.0
AagrBONN_evm.TU.Sc2ySwM_362.247 Anthoceros agrestis HOM05D005804 ORTHO05D006849 4.3e-45 186.8 429 31.0
CARHR232300 Cardamine hirsuta HOM05D005804 ORTHO05D006849 3.0e-43 180.6 241 44.4
Pp3c6_21480 Physcomitrium patens HOM05D005804 ORTHO05D006849 1.8e-40 171.4 485 32.2
Carub.0007s1616 Capsella rubella HOM05D005804 ORTHO05D006849 2.4e-40 171.0 182 51.6
ATR0178G019 Amborella trichopoda HOM05D005804 ORTHO05D006849 3.9e-38 163.7 125 60.0
SMO133G0032 Selaginella moellendorffii HOM05D005804 ORTHO05D006849 5.0e-38 163.3 434 30.9
vmacro16719 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 1.9e-37 161.4 185 49.7
AUR62034829 Chenopodium quinoa HOM05D005804 ORTHO05D006849 3.3e-37 160.6 213 43.7
AUR62034830 Chenopodium quinoa HOM05D005804 ORTHO05D006849 3.3e-37 160.6 213 43.7
Dinv11175 Davidia involucrata HOM05D005804 ORTHO05D006849 1.5e-34 151.8 120 65.0
SGA_v2.0_scaffold110G31174 Striga asiatica HOM05D052586 ORTHO05D006849 4.4e-34 150.2 113 55.8
vmacro16720 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 9.8e-34 149.1 143 57.3
ATR0178G002 Amborella trichopoda HOM05D005804 ORTHO05D006849 2.9e-33 147.5 288 39.2
SEGI_03962 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 4.6e-31 140.2 352 31.0
Potri.015G096700 Populus trichocarpa HOM05D005804 ORTHO05D006849 2.3e-30 137.9 242 38.0
SEGI_07598 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 7.5e-26 122.9 137 40.1
Oeu016044.4 Olea europaea HOM05D005804 ORTHO05D006849 1.9e-24 118.2 178 41.0
Mapoly0096s0044 Marchantia polymorpha HOM05D005804 ORTHO05D006849 7.1e-24 116.3 128 38.3
Mapoly0096s0043 Marchantia polymorpha HOM05D005804 ORTHO05D006849 4.3e-21 107.1 138 46.4
Zm00001eb317740 Zea mays HOM05D005804 ORTHO05D006849 5.6e-21 106.7 128 51.6
CSS0025658 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 2.3e-19 101.3 158 42.4
SalBow2G1912 Salvia bowleyana HOM05D000011 ORTHO05D000018 6.8e-19 99.8 91 52.7
CiPaw.12G043400 Carya illinoinensis HOM05D005804 ORTHO05D006849 3.2e-16 90.9 67 71.6
CBR_g12751 Chara braunii HOM05D005804 ORTHO05D006849 4.4e-10 70.5 159 34.6
Actinidia36808 Actinidia chinensis HOM05D005804 ORTHO05D006849 2.2e-09 68.2 70 51.4
Sabra15G0117400 Salix brachista HOM05D005804 ORTHO05D006849 1.4e-08 65.5 107 38.3


User provided reference genes

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