Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G006200 Carya illinoinensis HOM05D005391 ORTHO05D006694 8.9e-97 357.1 197 100.0
CiPaw.12G044000 Carya illinoinensis HOM05D005391 ORTHO05D006694 1.7e-68 263.1 199 73.9
Dinv23158 Davidia involucrata HOM05D005391 ORTHO05D006694 1.5e-56 223.4 197 68.5
MD08G1006700 Malus domestica HOM05D005391 ORTHO05D006694 2.6e-56 222.6 206 64.6
MD15G1005900 Malus domestica HOM05D005391 ORTHO05D006694 2.6e-56 222.6 206 65.5
Prupe.1G358600 Prunus persica HOM05D005391 ORTHO05D006694 2.6e-56 222.6 204 66.2
Haze_07152 Corylus avellana HOM05D005391 ORTHO05D006694 8.4e-55 217.6 197 67.0
Thecc.03G130500 Theobroma cacao HOM05D005391 ORTHO05D006694 3.2e-54 215.7 206 68.0
Cfa018784 Carpinus fangiana HOM05D005391 ORTHO05D006694 5.4e-54 214.9 197 66.5
TWI23G0649 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 2.1e-53 213.0 202 62.4
COL.COLO4_28143 Corchorus olitorius HOM05D005391 ORTHO05D006694 2.7e-53 212.6 207 63.8
CANSAT80G1472 Cannabis sativa HOM05D005391 ORTHO05D006694 4.6e-53 211.8 206 62.1
Manes.14G050400 Manihot esculenta HOM05D005391 ORTHO05D006694 1.3e-52 210.3 208 62.0
Sed0002904 Sechium edule HOM05D005391 ORTHO05D006694 1.3e-52 210.3 198 62.1
CSS0043065 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 6.7e-52 208.0 197 62.9
vmacro16727 Vaccinium macrocarpon HOM05D005391 ORTHO05D006694 8.7e-52 207.6 191 62.8
Actinidia36818 Actinidia chinensis HOM05D005391 ORTHO05D006694 1.3e-50 203.8 185 63.8
MELO3C026202.2 Cucumis melo HOM05D005391 ORTHO05D006694 1.6e-50 203.4 203 59.1
FAN20G0870 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.6e-50 203.4 202 60.9
TWI14G1436 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 2.8e-50 202.6 192 66.1
FAN15G0439 Fragaria x ananassa HOM05D005391 ORTHO05D006694 3.7e-50 202.2 202 60.9
TAR371G0831 Trochodendron aralioides HOM05D005391 ORTHO05D006694 3.7e-50 202.2 189 62.4
CsaV3_1G000500 Cucumis sativus L. HOM05D005391 ORTHO05D006694 4.8e-50 201.8 202 59.9
FvH4_2g37750 Fragaria vesca HOM05D005391 ORTHO05D006694 1.4e-49 200.3 203 61.1
QL10p002677 Quercus lobata HOM05D005391 ORTHO05D006694 2.4e-49 199.5 196 61.2
Cpa.g.sc13.100 Carica papaya HOM05D005391 ORTHO05D006694 3.1e-49 199.1 204 60.8
Gorai.001G058300 Gossypium raimondii HOM05D005391 ORTHO05D006694 1.5e-48 196.8 208 60.6
Gohir.D07G055100 Gossypium hirsutum HOM05D005391 ORTHO05D006694 2.0e-48 196.4 208 60.6
Nn4g22289 Nelumbo nucifera HOM05D005391 ORTHO05D006694 2.6e-48 196.1 189 63.0
Gohir.A07G050600 Gossypium hirsutum HOM05D005391 ORTHO05D006694 3.4e-48 195.7 206 60.7
CSS0003205 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 4.5e-48 195.3 197 64.0
CSS0033680 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 4.5e-48 195.3 197 64.0
FAN27G0224 Fragaria x ananassa HOM05D005391 ORTHO05D006694 7.6e-48 194.5 203 60.6
Ciclev10032864m.g Citrus clementina HOM05D005391 ORTHO05D006694 1.0e-47 194.1 201 59.2
TAR629G0488 Trochodendron aralioides HOM05D005391 ORTHO05D006694 1.7e-47 193.4 197 59.9
Lsat_1_v5_gn_4_81240 Lactuca sativa HOM05D005391 ORTHO05D006694 2.2e-47 193.0 200 60.0
Atru.chr6.1808 Acer truncatum HOM05D005391 ORTHO05D006694 1.1e-46 190.7 199 58.3
Ca_16053_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 1.9e-46 189.9 199 58.8
Rhsim12G0176000 Rhododendron simsii HOM05D005391 ORTHO05D006694 3.2e-46 189.1 195 60.0
Potri.015G097800 Populus trichocarpa HOM05D005391 ORTHO05D006694 5.5e-46 188.3 188 60.6
DCAR_016386 Daucus carota HOM05D005391 ORTHO05D006694 1.3e-44 183.7 198 57.6
Duzib205G0229 Durio zibethinus HOM05D005391 ORTHO05D006694 1.3e-44 183.7 208 56.2
Nn3g16438 Nelumbo nucifera HOM05D005391 ORTHO05D006694 1.3e-44 183.7 197 55.3
RcHm_v2.0_Chr6g0303761 Rosa chinensis HOM05D005391 ORTHO05D006694 2.3e-44 183.0 199 60.8
Medtr3g099130 Medicago truncatula HOM05D005391 ORTHO05D006694 3.0e-44 182.6 195 56.4
Psat5g051960 Pisum sativum HOM05D005391 ORTHO05D006694 6.7e-44 181.4 187 58.8
Cc08_g07550 Coffea canephora HOM05D005391 ORTHO05D006694 1.1e-43 180.6 212 54.7
Lj1g0005006 Lotus japonicus HOM05D005391 ORTHO05D006694 1.1e-43 180.6 198 56.6
Potri.012G099200 Populus trichocarpa HOM05D005391 ORTHO05D006694 1.1e-43 180.6 185 61.6
Peaxi162Scf00045g01932 Petunia axillaris HOM05D005391 ORTHO05D006694 1.5e-43 180.3 199 57.3
MBI07_g28244_MAGBIO Magnolia biondii HOM05D005391 ORTHO05D006694 5.7e-43 178.3 184 57.1
Sp2g26560 Schrenkiella parvula HOM05D005391 ORTHO05D006694 5.7e-43 178.3 186 58.6
FAN26G2573 Fragaria x ananassa HOM05D005391 ORTHO05D006694 7.4e-43 177.9 198 57.1
PSO478G3696 Papaver somniferum HOM05D005391 ORTHO05D006694 7.4e-43 177.9 190 58.4
GSVIVG01008565001 Vitis vinifera HOM05D005391 ORTHO05D006694 9.6e-43 177.6 185 59.5
PSO017G3900 Papaver somniferum HOM05D005391 ORTHO05D006694 1.3e-42 177.2 190 57.9
PGSC0003DMG400026284 Solanum tuberosum HOM05D005391 ORTHO05D006694 1.3e-42 177.2 200 55.5
Nitab4.5_0000264g0120 Nicotiana tabacum HOM05D005391 ORTHO05D006694 1.6e-42 176.8 199 54.8
Sabra12G0072400 Salix brachista HOM05D005391 ORTHO05D006694 1.6e-42 176.8 191 61.3
Lj5A95T81 Lonicera japonica HOM05D005391 ORTHO05D006694 2.1e-42 176.4 212 57.1
TPR.G14215 Trifolium pratense HOM05D005391 ORTHO05D006694 3.7e-42 175.6 205 56.6
ClCG06G017970 Citrullus lanatus HOM05D005391 ORTHO05D006694 2.4e-41 172.9 250 47.6
ECA232G1626 Erigeron canadensis HOM05D005391 ORTHO05D006694 9.0e-41 171.0 205 53.7
Sabra15G0118500 Salix brachista HOM05D005391 ORTHO05D006694 1.2e-40 170.6 206 54.4
Lalb_Chr23g0273681 Lupinus albus HOM05D005391 ORTHO05D006694 1.5e-40 170.2 196 56.6
Ah.03g143420 Amaranthus hybridus HOM05D005391 ORTHO05D006694 2.0e-40 169.9 194 54.1
Glyma.04G196600 Glycine max HOM05D005391 ORTHO05D006694 2.0e-40 169.9 194 53.6
THA.LOC104798944 Tarenaya hassleriana HOM05D005391 ORTHO05D006694 2.0e-40 169.9 206 52.9
CARHR277330 Cardamine hirsuta HOM05D005391 ORTHO05D006694 5.8e-40 168.3 189 55.6
A06p30110 Brassica napus HOM05D005391 ORTHO05D006694 1.0e-39 167.5 190 55.8
BraA06t25962Z Brassica rapa HOM05D005391 ORTHO05D006694 1.0e-39 167.5 190 55.8
A09p08280 Brassica napus HOM05D005391 ORTHO05D006694 1.3e-39 167.2 188 54.8
C03p62960 Brassica napus HOM05D005391 ORTHO05D006694 1.7e-39 166.8 190 55.3
BolC3t18550H Brassica oleracea HOM05D005391 ORTHO05D006694 1.7e-39 166.8 190 55.3
AUR62002017 Chenopodium quinoa HOM05D005391 ORTHO05D006694 1.7e-39 166.8 196 54.1
Aa31LG1G18560 Aethionema arabicum HOM05D005391 ORTHO05D006694 2.9e-39 166.0 204 52.5
Oeu009657.1 Olea europaea HOM05D005391 ORTHO05D006694 2.9e-39 166.0 214 54.7
Phvul.009G165600 Phaseolus vulgaris HOM05D005391 ORTHO05D006694 2.9e-39 166.0 196 56.1
arahy.Tifrunner.gnm1.ann1.S11VKX Arachis hypogaea HOM05D005391 ORTHO05D006694 3.8e-39 165.6 188 58.5
AUR62003784 Chenopodium quinoa HOM05D005391 ORTHO05D006694 6.5e-39 164.9 184 54.3
Glyma.06G169200 Glycine max HOM05D005391 ORTHO05D006694 8.4e-39 164.5 183 55.7
AL8G40540 Arabidopsis lyrata HOM05D005391 ORTHO05D006694 1.1e-38 164.1 184 53.3
EL10Ac6g15093 Beta vulgaris HOM05D005391 ORTHO05D006694 1.1e-38 164.1 196 53.1
MSTRG.25825 Avicennia marina HOM05D005391 ORTHO05D006694 1.4e-38 163.7 221 51.1
BraA09t36478Z Brassica rapa HOM05D005391 ORTHO05D006694 1.4e-38 163.7 188 54.3
Hund08624 Selenicereus undatus HOM05D005391 ORTHO05D006694 3.2e-38 162.5 195 52.8
Sopen08g002620 Solanum pennellii HOM05D005391 ORTHO05D006694 3.2e-38 162.5 203 53.2
BcaB04g19920 Brassica carinata HOM05D005391 ORTHO05D006694 4.2e-38 162.2 189 52.4
Thhalv10004987m.g Eutrema salsugineum HOM05D005391 ORTHO05D006694 1.2e-37 160.6 192 52.1
Solyc08g006670.3 Solanum lycopersicum HOM05D005391 ORTHO05D006694 2.7e-37 159.5 203 52.2
arahy.Tifrunner.gnm1.ann1.3A01UJ Arachis hypogaea HOM05D005391 ORTHO05D006694 6.1e-37 158.3 196 56.1
Migut.E01449 Erythranthe guttata HOM05D005391 ORTHO05D006694 7.9e-37 157.9 220 49.1
SGA_v2.0_scaffold169G38603 Striga asiatica HOM05D005391 ORTHO05D006694 7.9e-37 157.9 206 52.9
unitig_32.g10935 Utricularia gibba HOM05D005391 ORTHO05D006694 2.3e-36 156.4 223 48.4
BcaB02g09758 Brassica carinata HOM05D005391 ORTHO05D006694 3.9e-36 155.6 184 52.7
SalBow8G3527 Salvia bowleyana HOM05D005391 ORTHO05D006694 8.7e-36 154.5 212 51.9
AT5G63480 Arabidopsis thaliana HOM05D005391 ORTHO05D006694 1.9e-35 153.3 184 54.3
Carub.0008s2418 Capsella rubella HOM05D005391 ORTHO05D006694 2.5e-35 152.9 185 53.0
ATR0171G017 Amborella trichopoda HOM05D005391 ORTHO05D006694 5.7e-35 151.8 185 48.6
Aqoxy3G01572 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 2.8e-34 149.4 185 51.4
Actinidia08882 Actinidia chinensis HOM05D005391 ORTHO05D006694 1.4e-33 147.1 152 58.6
arahy.Tifrunner.gnm1.ann1.CP8X4X Arachis hypogaea HOM05D005391 ORTHO05D006694 5.3e-33 145.2 230 47.8
arahy.Tifrunner.gnm1.ann1.HT4698 Arachis hypogaea HOM05D005391 ORTHO05D006694 5.3e-33 145.2 230 47.8
CDE04G2377 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 6.9e-33 144.8 187 50.3
BolC9t53848H Brassica oleracea HOM05D005391 ORTHO05D006694 7.7e-32 141.4 185 49.7
CDE10G0912 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 7.7e-32 141.4 190 47.9
BcaC04g23332 Brassica carinata HOM05D005391 ORTHO05D006694 1.6e-29 133.7 185 48.6
C09p09360 Brassica napus HOM05D005391 ORTHO05D006694 1.6e-29 133.7 185 48.6
Zm00001eb421130 Zea mays HOM05D005391 ORTHO05D006694 2.7e-29 132.9 182 45.6
Aqoxy3G00618 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 7.9e-29 131.3 183 50.3
HanXRQChr09g0273301 Helianthus annuus HOM05D005391 ORTHO05D006694 7.9e-29 131.3 158 52.5
FAN23G2258 Fragaria x ananassa HOM05D005391 ORTHO05D006694 2.8e-26 122.9 165 52.7
Nitab4.5_0001362g0010 Nicotiana tabacum HOM05D005391 ORTHO05D006694 3.7e-26 122.5 198 44.9
CSS0010891 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 4.8e-26 122.1 131 60.3
Ca_01190_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 6.3e-26 121.7 115 59.1
Ah.07g204620 Amaranthus hybridus HOM05D005391 ORTHO05D006694 5.3e-25 118.6 161 49.7
SEGI_01116 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 6.9e-25 118.2 181 44.2
Sc04g0000550 Simmondsia chinensis HOM05D005391 ORTHO05D006694 3.4e-24 115.9 147 52.4
DCAR_021623 Daucus carota HOM05D005391 ORTHO05D006694 5.0e-23 112.1 183 41.0
FAN23G0903 Fragaria x ananassa HOM05D005391 ORTHO05D006694 8.5e-23 111.3 196 46.4
HPP92_023119 Vanilla planifolia HOM05D005391 ORTHO05D006694 4.2e-22 109.0 191 42.9
Oeu040668.1 Olea europaea HOM05D005391 ORTHO05D006694 2.1e-21 106.7 170 44.7
Pp3c7_3280 Physcomitrium patens HOM05D005391 ORTHO05D006694 1.8e-20 103.6 198 38.4
VMungo1309G0665 Vigna mungo HOM05D005391 ORTHO05D006694 1.3e-18 97.4 135 51.9
Gohir.1Z049409 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.1e-17 94.4 129 54.3
Mapoly0007s0225 Marchantia polymorpha HOM05D005391 ORTHO05D006694 7.0e-17 91.7 185 36.8
CSS0049043 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 5.9e-16 88.6 67 65.7
SMO364G0653 Selaginella moellendorffii HOM05D005391 ORTHO05D006694 2.7e-13 79.7 179 31.3
AagrBONN_evm.TU.Sc2ySwM_369.268 Anthoceros agrestis HOM05D005391 ORTHO05D006694 6.7e-12 75.1 195 31.3
Os04g0388601 Oryza sativa ssp. japonica HOM05D005391 ORTHO05D006694 1.1e-11 74.3 163 41.1
Zm00001eb085410 Zea mays HOM05D005391 ORTHO05D006694 2.0e-08 63.5 110 45.5
SEGI_13536 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 3.5e-08 62.8 109 38.5
CDE10G0174 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 5.5e-06 55.5 63 55.6


User provided reference genes

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