Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 2.3e-301 1038.1 516 100.0
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 3.2e-231 805.1 482 83.4
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 2.4e-210 735.7 486 75.5
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 1.2e-209 733.4 489 75.5
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 6.5e-208 727.6 572 66.8
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 3.0e-205 718.8 474 75.7
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 1.2e-204 716.8 479 74.9
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 2.0e-204 716.1 486 73.3
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 2.2e-203 712.6 540 70.7
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 4.9e-203 711.4 489 74.0
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 1.6e-201 706.4 482 74.1
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 2.3e-200 702.6 482 72.2
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 8.6e-200 700.7 489 72.6
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 5.6e-199 698.0 481 73.0
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 9.5e-199 697.2 489 70.3
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 3.6e-198 695.3 512 69.5
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 4.7e-198 694.9 489 71.6
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 8.0e-198 694.1 507 68.8
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 5.2e-197 691.4 490 69.0
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 1.5e-196 689.9 521 68.9
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 9.8e-196 687.2 491 69.9
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 1.7e-195 686.4 479 72.2
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 3.7e-195 685.3 487 69.8
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 3.7e-195 685.3 489 70.8
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.4e-194 683.3 479 72.0
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.8e-194 682.9 479 71.8
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.5e-191 673.3 470 72.1
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 1.9e-191 672.9 489 69.1
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 2.5e-191 672.5 483 71.2
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.6e-190 669.8 485 70.7
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 2.1e-190 669.5 472 70.6
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 3.1e-189 665.6 491 69.9
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.5e-188 663.3 491 69.5
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 1.5e-188 663.3 489 69.9
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 2.6e-188 662.5 478 69.7
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.4e-188 662.1 480 70.4
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 5.8e-188 661.4 490 69.4
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.3e-187 660.2 489 69.5
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 1.7e-187 659.8 491 68.8
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.7e-187 658.7 489 69.3
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 3.7e-187 658.7 480 70.0
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 6.4e-187 657.9 484 68.8
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 8.3e-187 657.5 506 67.0
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 8.3e-187 657.5 487 68.4
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 1.1e-186 657.1 476 70.0
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 1.9e-186 656.4 471 70.5
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 3.2e-186 655.6 486 67.7
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 4.1e-186 655.2 503 65.8
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 5.4e-186 654.8 480 69.6
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.6e-185 653.3 486 68.3
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.7e-185 652.5 503 67.8
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 7.8e-185 651.0 505 66.1
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 7.8e-185 651.0 486 67.7
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 1.9e-183 646.4 452 72.6
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 2.5e-183 646.0 504 67.3
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 1.8e-181 639.8 515 64.5
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.5e-180 636.7 528 64.6
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 2.6e-180 636.0 429 73.9
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 8.3e-179 630.9 528 62.3
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 4.1e-178 628.6 449 68.6
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 1.6e-177 626.7 489 64.6
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 3.9e-176 622.1 485 64.3
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 5.1e-176 621.7 526 63.3
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 1.9e-175 619.8 513 64.3
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 4.7e-174 615.1 533 61.2
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 6.2e-174 614.8 525 60.8
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 1.4e-173 613.6 530 60.2
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 1.2e-172 610.5 525 60.4
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 3.4e-172 609.0 486 64.4
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 3.8e-171 605.5 523 60.4
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.1e-170 604.0 481 64.9
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 9.2e-170 600.9 525 59.8
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.0e-168 597.4 492 61.8
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 4.3e-167 592.0 482 62.7
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 1.2e-166 590.5 482 62.9
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 1.2e-166 590.5 481 63.4
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 6.2e-166 588.2 487 61.8
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.4e-165 587.0 488 61.7
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 3.1e-165 585.9 520 57.9
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.5e-164 583.6 489 62.4
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 3.4e-164 582.4 490 62.7
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 4.4e-164 582.0 482 63.7
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 4.9e-163 578.6 479 62.2
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.1e-162 577.4 364 74.7
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 1.1e-162 577.4 522 57.7
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 7.1e-162 574.7 500 60.0
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 1.3e-160 570.5 499 60.1
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 2.3e-160 569.7 483 61.7
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 2.3e-160 569.7 538 55.8
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 5.1e-160 568.5 499 60.1
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 7.3e-159 564.7 479 60.3
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 9.6e-159 564.3 483 60.2
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.6e-158 563.5 452 63.7
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 8.1e-158 561.2 489 60.7
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 1.1e-157 560.8 509 56.8
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 3.4e-156 555.8 525 55.4
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 7.6e-156 554.7 487 60.4
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 4.2e-154 548.9 404 65.6
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 2.1e-153 546.6 481 58.8
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 1.8e-152 543.5 495 56.8
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 8.7e-152 541.2 374 68.2
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 1.1e-151 540.8 493 58.2
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 2.5e-151 539.7 524 54.4
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 3.1e-149 532.7 523 54.3
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 6.4e-147 525.0 499 56.7
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 6.0e-145 518.5 478 56.3
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.8e-144 516.9 487 55.9
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 1.9e-143 513.5 490 57.8
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 9.6e-143 511.1 402 65.2
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 1.1e-141 507.7 422 60.0
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 5.3e-141 505.4 297 78.1
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.2e-140 504.2 481 55.5
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 1.5e-140 503.8 479 53.7
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 2.6e-140 503.1 491 54.4
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 1.0e-139 501.1 354 67.2
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 4.6e-137 492.3 499 54.3
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 2.3e-136 490.0 481 55.9
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 1.1e-133 481.1 338 68.0
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.5e-132 477.2 314 70.4
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 1.9e-130 470.3 509 54.0
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.8e-125 453.8 438 55.5
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 1.1e-119 434.5 312 69.9
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 2.6e-119 433.3 270 75.9
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 3.7e-118 429.5 375 57.9
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 2.4e-117 426.8 348 58.3
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 5.3e-117 425.6 354 57.3
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.2e-116 424.5 385 53.2
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 5.9e-116 422.2 445 49.4
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 7.7e-116 421.8 504 45.8
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 1.7e-115 420.6 347 56.8
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 3.8e-115 419.5 370 54.6
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 2.5e-114 416.8 505 45.5
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 2.5e-114 416.8 505 45.5
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 9.4e-114 414.8 520 44.6
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 9.4e-114 414.8 445 50.6
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 2.1e-113 413.7 516 44.6
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 2.1e-113 413.7 520 44.4
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.5e-111 407.5 446 48.0
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.5e-111 407.5 281 65.5
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 3.1e-109 399.8 430 48.1
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 7.2e-106 388.7 421 50.8
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 2.7e-105 386.7 531 42.0
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 2.7e-105 386.7 531 42.0
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.7e-105 386.7 298 59.1
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 1.0e-104 384.8 535 43.4
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 1.0e-104 384.8 535 43.4
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 4.4e-103 379.4 508 41.1
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.6e-100 370.9 226 73.0
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 1.6e-97 360.9 393 51.7
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.7e-94 350.9 207 78.7
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 9.1e-93 345.1 207 76.3
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 2.1e-81 307.4 298 49.7
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 2.5e-74 283.9 265 59.6
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 3.6e-65 253.4 500 36.6
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 4.4e-63 246.5 450 37.1
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 1.0e-59 235.3 290 50.3
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 1.1e-53 215.3 163 63.2
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 7.8e-52 209.1 204 59.3
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 5.3e-48 196.4 535 30.3
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 1.2e-47 195.3 124 74.2
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 6.4e-46 189.5 264 45.8
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 4.3e-42 176.8 133 66.2
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 1.8e-40 171.4 259 36.3
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 4.2e-37 160.2 99 72.7
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.5e-34 151.8 83 84.3
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 5.3e-32 143.3 82 84.1
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 6.0e-28 129.8 103 54.4
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 1.3e-27 128.6 67 88.1
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 1.1e-24 119.0 94 59.6
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 4.0e-24 117.1 65 84.6
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.1e-18 99.0 200 37.0
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 7.7e-15 86.3 201 33.8
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.4e-13 82.0 132 40.2
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 5.0e-06 57.0 140 34.3


User provided reference genes

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