Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G159900 Carya illinoinensis HOM05D005958 ORTHO05D007469 3.5e-264 914.4 479 100.0
Haze_21057 Corylus avellana HOM05D005958 ORTHO05D007469 4.6e-123 445.7 516 53.1
TAR357G0008 Trochodendron aralioides HOM05D005958 ORTHO05D007469 1.2e-110 404.4 540 44.8
Duzib093G1771 Durio zibethinus HOM05D005958 ORTHO05D007469 2.9e-109 399.8 538 44.4
TAR369G0426 Trochodendron aralioides HOM05D005958 ORTHO05D007469 1.9e-108 397.1 542 45.6
Thecc.05G009300 Theobroma cacao HOM05D005958 ORTHO05D007469 2.1e-107 393.7 539 45.3
CSS0015840 Camellia sinensis var. sinensis HOM05D005958 ORTHO05D007469 1.3e-106 391.0 541 44.4
CSS0028387 Camellia sinensis var. sinensis HOM05D005958 ORTHO05D007469 1.3e-106 391.0 541 44.4
Prupe.6G282800 Prunus persica HOM05D005958 ORTHO05D007469 1.9e-105 387.1 543 45.7
Potri.016G122500 Populus trichocarpa HOM05D005958 ORTHO05D007469 2.2e-104 383.6 542 43.5
CiPaw.10G159700 Carya illinoinensis HOM05D005958 ORTHO05D007469 3.7e-104 382.9 256 79.3
CSS0033178 Camellia sinensis var. sinensis HOM05D005958 ORTHO05D007469 1.4e-103 380.9 540 45.2
Dinv12141 Davidia involucrata HOM05D005958 ORTHO05D007469 1.4e-103 380.9 538 44.6
FvH4_6g10950 Fragaria vesca HOM05D005958 ORTHO05D007469 1.8e-98 364.0 546 41.9
TWI77G0943 Tripterygium wilfordii HOM05D005958 ORTHO05D007469 3.9e-98 362.8 540 43.3
Actinidia29080 Actinidia chinensis HOM05D005958 ORTHO05D007469 2.8e-96 356.7 536 43.7
Ciclev10011458m.g Citrus clementina HOM05D005958 ORTHO05D007469 2.8e-96 356.7 538 41.3
FAN14G5414 Fragaria x ananassa HOM05D005958 ORTHO05D007469 8.2e-96 355.1 540 41.7
TWI74G1578 Tripterygium wilfordii HOM05D005958 ORTHO05D007469 9.1e-95 351.7 543 41.6
FAN09G0235 Fragaria x ananassa HOM05D005958 ORTHO05D007469 1.5e-94 350.9 546 40.5
Manes.09G109800 Manihot esculenta HOM05D005958 ORTHO05D007469 1.5e-94 350.9 537 41.3
FAN05G5785 Fragaria x ananassa HOM05D005958 ORTHO05D007469 4.5e-94 349.4 547 40.4
FAN02G1060 Fragaria x ananassa HOM05D005958 ORTHO05D007469 5.9e-94 349.0 547 40.4
Gohir.A09G166900 Gossypium hirsutum HOM05D005958 ORTHO05D007469 5.9e-94 349.0 541 41.6
CSS0015551 Camellia sinensis var. sinensis HOM05D005958 ORTHO05D007469 7.7e-94 348.6 542 41.3
Gohir.D09G162800 Gossypium hirsutum HOM05D005958 ORTHO05D007469 1.0e-93 348.2 541 41.4
Gorai.006G184400 Gossypium raimondii HOM05D005958 ORTHO05D007469 1.0e-93 348.2 541 41.4
FAN05G4888 Fragaria x ananassa HOM05D005958 ORTHO05D007469 1.9e-92 344.0 547 40.0
RcHm_v2.0_Chr3g0462231 Rosa chinensis HOM05D005958 ORTHO05D007469 9.4e-92 341.7 548 40.3
MD04G1163300 Malus domestica HOM05D005958 ORTHO05D007469 3.0e-90 336.7 547 39.7
MD12G1176900 Malus domestica HOM05D005958 ORTHO05D007469 3.0e-90 336.7 547 40.6
Manes.08G095500 Manihot esculenta HOM05D005958 ORTHO05D007469 3.9e-90 336.3 541 39.2
Cfa017138 Carpinus fangiana HOM05D005958 ORTHO05D007469 1.1e-89 334.7 477 47.2
RcHm_v2.0_Chr3g0462211 Rosa chinensis HOM05D005958 ORTHO05D007469 2.6e-89 333.6 549 40.3
Dinv04446 Davidia involucrata HOM05D005958 ORTHO05D007469 5.7e-89 332.4 458 44.5
MD04G1163400 Malus domestica HOM05D005958 ORTHO05D007469 1.7e-88 330.9 543 40.0
MD12G1177000 Malus domestica HOM05D005958 ORTHO05D007469 5.9e-86 322.4 547 39.1
Gorai.012G118000 Gossypium raimondii HOM05D005958 ORTHO05D007469 6.5e-85 318.9 546 40.5
Dinv08434 Davidia involucrata HOM05D005958 ORTHO05D007469 3.2e-84 316.6 416 46.9
Dinv08437 Davidia involucrata HOM05D005958 ORTHO05D007469 2.7e-83 313.5 443 44.2
COL.COLO4_14482 Corchorus olitorius HOM05D005958 ORTHO05D007469 2.3e-82 310.5 547 40.6
Gohir.A04G094800 Gossypium hirsutum HOM05D005958 ORTHO05D007469 4.0e-82 309.7 546 39.7
MD12G1177200 Malus domestica HOM05D005958 ORTHO05D007469 4.0e-82 309.7 382 46.6
FvH4_6g10940 Fragaria vesca HOM05D005958 ORTHO05D007469 9.7e-81 305.1 466 41.2
FAN05G1422 Fragaria x ananassa HOM05D005958 ORTHO05D007469 9.7e-81 305.1 543 37.8
Glyma.18G205100 Glycine max HOM05D005958 ORTHO05D007469 4.8e-80 302.8 570 38.1
Cc06_g00950 Coffea canephora HOM05D005958 ORTHO05D007469 2.4e-79 300.4 419 44.2
Glyma.07G154300 Glycine max HOM05D005958 ORTHO05D007469 5.3e-79 299.3 573 37.3
Aqoxy2G00814 Aquilegia oxysepala HOM05D005958 ORTHO05D007469 1.2e-78 298.1 550 39.3
Actinidia20755 Actinidia chinensis HOM05D005958 ORTHO05D007469 4.5e-78 296.2 533 39.6
FAN02G3855 Fragaria x ananassa HOM05D005958 ORTHO05D007469 5.9e-78 295.8 467 39.8
VMungo1383G1981 Vigna mungo HOM05D005958 ORTHO05D007469 5.9e-78 295.8 473 40.6
Actinidia11559 Actinidia chinensis HOM05D000026 ORTHO05D000094 8.5e-77 292.0 527 38.9
Actinidia29081 Actinidia chinensis HOM05D005958 ORTHO05D007469 8.5e-77 292.0 443 42.9
FAN09G1941 Fragaria x ananassa HOM05D005958 ORTHO05D007469 7.2e-76 288.9 467 40.0
Gohir.D04G134450 Gossypium hirsutum HOM05D005958 ORTHO05D007469 8.0e-75 285.4 527 39.3
Lsat_1_v5_gn_8_102760 Lactuca sativa HOM05D005958 ORTHO05D007469 1.8e-74 284.3 467 40.7
Cc06_g00940 Coffea canephora HOM05D005958 ORTHO05D007469 3.0e-74 283.5 549 36.6
Phvul.008G094400 Phaseolus vulgaris HOM05D005958 ORTHO05D007469 1.5e-73 281.2 473 40.2
Eucgr.A00605 Eucalyptus grandis HOM05D005958 ORTHO05D007469 9.8e-73 278.5 532 36.8
Medtr7g069740 Medicago truncatula HOM05D005958 ORTHO05D007469 8.3e-72 275.4 417 41.7
Psat3g124280 Pisum sativum HOM05D005958 ORTHO05D007469 1.8e-71 274.2 417 41.5
MBI15_g36987_MAGBIO Magnolia biondii HOM05D005958 ORTHO05D007469 4.1e-71 273.1 405 42.2
Actinidia29082 Actinidia chinensis HOM05D005958 ORTHO05D007469 7.0e-71 272.3 406 42.1
Nitab4.5_0010796g0010 Nicotiana tabacum HOM05D005958 ORTHO05D007469 9.1e-71 271.9 379 42.5
Thecc.09G354200 Theobroma cacao HOM05D005958 ORTHO05D007469 1.2e-70 271.6 536 36.6
TWI77G0187 Tripterygium wilfordii HOM05D005958 ORTHO05D007469 3.5e-70 270.0 456 39.7
TPR.G21328 Trifolium pratense HOM05D005958 ORTHO05D007469 1.0e-69 268.5 396 41.9
Oeu038745.1 Olea europaea HOM05D005958 ORTHO05D007469 8.5e-69 265.4 376 43.4
Glyma.03G050800 Glycine max HOM05D005958 ORTHO05D007469 1.9e-68 264.2 426 40.1
Lsat_1_v5_gn_9_37360 Lactuca sativa HOM05D005958 ORTHO05D007469 1.2e-67 261.5 403 39.5
DCAR_028875 Daucus carota HOM05D005958 ORTHO05D007469 2.7e-67 260.4 422 38.4
CANSAT35G2009 Cannabis sativa HOM05D005958 ORTHO05D007469 4.7e-67 259.6 522 37.0
Lsat_1_v5_gn_9_37380 Lactuca sativa HOM05D005958 ORTHO05D007469 2.3e-66 257.3 437 38.4
Manes.08G095400 Manihot esculenta HOM05D005958 ORTHO05D007469 2.3e-66 257.3 391 39.4
Potri.009G075500 Populus trichocarpa HOM05D005958 ORTHO05D007469 2.3e-66 257.3 440 39.3
Actinidia23873 Actinidia chinensis HOM05D005958 ORTHO05D007469 4.0e-66 256.5 387 44.2
Oeu042662.1 Olea europaea HOM05D005958 ORTHO05D007469 5.2e-66 256.1 538 35.3
PGR031G2865 Punica granatum HOM05D005958 ORTHO05D007469 5.2e-66 256.1 542 34.9
Solyc09g018460.1 Solanum lycopersicum HOM05D005958 ORTHO05D007469 8.8e-66 255.4 467 36.8
HanXRQChr04g0105851 Helianthus annuus HOM05D005958 ORTHO05D007469 2.0e-65 254.2 398 40.5
COL.COLO4_11067 Corchorus olitorius HOM05D005958 ORTHO05D007469 2.6e-65 253.8 536 36.6
Lj1g0001035 Lotus japonicus HOM05D005958 ORTHO05D007469 2.6e-65 253.8 575 35.1
Sopen09g011650 Solanum pennellii HOM05D005958 ORTHO05D007469 5.7e-65 252.7 467 36.4
Duzib150G1675 Durio zibethinus HOM05D005958 ORTHO05D007469 7.5e-65 252.3 529 35.0
Rhsim01G0239700 Rhododendron simsii HOM05D005958 ORTHO05D007469 1.3e-64 251.5 543 36.1
Ca_07677_v3 Cicer arietinum L. HOM05D005958 ORTHO05D007469 1.7e-64 251.1 382 39.8
CAN.G456.8 Capsicum annuum HOM05D005958 ORTHO05D007469 2.2e-64 250.8 456 37.5
DCAR_007350 Daucus carota HOM05D005958 ORTHO05D007469 6.3e-64 249.2 541 33.1
PSO801G0039 Papaver somniferum HOM05D005958 ORTHO05D007469 3.1e-63 246.9 429 40.3
PGSC0003DMG400026643 Solanum tuberosum HOM05D005958 ORTHO05D007469 3.1e-63 246.9 472 35.2
Migut.J00119 Erythranthe guttata HOM05D005958 ORTHO05D007469 1.6e-62 244.6 542 33.6
ECA247G1750 Erigeron canadensis HOM05D005958 ORTHO05D007469 7.7e-62 242.3 376 40.7
Gohir.D08G219600 Gossypium hirsutum HOM05D005958 ORTHO05D007469 1.7e-61 241.1 414 39.9
Actinidia34469 Actinidia chinensis HOM05D000314 ORTHO05D007469 2.3e-61 240.7 453 38.6
DCAR_024004 Daucus carota HOM05D005958 ORTHO05D007469 5.0e-61 239.6 387 38.5
HanXRQChr10g0287091 Helianthus annuus HOM05D005958 ORTHO05D007469 5.0e-61 239.6 392 39.0
Gohir.A08G202600 Gossypium hirsutum HOM05D005958 ORTHO05D007469 6.6e-61 239.2 414 39.6
Gorai.004G233600 Gossypium raimondii HOM05D005958 ORTHO05D007469 1.5e-60 238.0 414 39.6
Atru.chr3.4148 Acer truncatum HOM05D005958 ORTHO05D007469 4.3e-60 236.5 552 33.7
Lsat_1_v5_gn_9_37400 Lactuca sativa HOM05D005958 ORTHO05D007469 5.6e-60 236.1 403 38.7
Nitab4.5_0000230g0040 Nicotiana tabacum HOM05D005958 ORTHO05D007469 2.1e-59 234.2 374 39.8
Lsat_1_v5_gn_9_37420 Lactuca sativa HOM05D005958 ORTHO05D007469 3.6e-59 233.4 414 37.7
Manes.02G212600 Manihot esculenta HOM05D005958 ORTHO05D007469 3.6e-59 233.4 412 40.0
ECA247G0388 Erigeron canadensis HOM05D005958 ORTHO05D007469 4.7e-59 233.0 411 37.5
ECA247G2256 Erigeron canadensis HOM05D005958 ORTHO05D007469 6.1e-59 232.6 400 38.5
Eucgr.K02965 Eucalyptus grandis HOM05D005958 ORTHO05D007469 6.8e-58 229.2 400 39.8
ECA247G0460 Erigeron canadensis HOM05D005958 ORTHO05D007469 2.6e-57 227.3 381 39.4
PGR004G1314 Punica granatum HOM05D005958 ORTHO05D007469 2.2e-56 224.2 425 36.5
GSVIVG01030305001 Vitis vinifera HOM05D005958 ORTHO05D007469 6.4e-56 222.6 343 42.9
Cpa.g.sc120.45 Carica papaya HOM05D005958 ORTHO05D007469 2.4e-55 220.7 412 37.4
HanXRQChr15g0463921 Helianthus annuus HOM05D005958 ORTHO05D007469 2.0e-54 217.6 368 38.0
Atru.chr8.2303 Acer truncatum HOM05D005958 ORTHO05D007469 7.8e-54 215.7 407 37.6
Migut.J00120 Erythranthe guttata HOM05D005958 ORTHO05D007469 1.3e-53 214.9 391 38.4
HanXRQChr10g0291521 Helianthus annuus HOM05D005958 ORTHO05D007469 1.5e-49 201.4 406 36.9
SalBow4G2100 Salvia bowleyana HOM05D005958 ORTHO05D007469 2.0e-49 201.1 403 35.5
SalBow4G2317 Salvia bowleyana HOM05D005958 ORTHO05D007469 2.0e-49 201.1 403 35.5
FAN05G3596 Fragaria x ananassa HOM05D005958 ORTHO05D007469 2.9e-48 197.2 258 42.2
Peaxi162Scf01132g00321 Petunia axillaris HOM05D005958 ORTHO05D007469 7.0e-47 192.6 406 34.7
Lsat_1_v5_gn_2_47641 Lactuca sativa HOM05D005958 ORTHO05D007469 4.6e-46 189.9 449 33.9
Oeu009109.1 Olea europaea HOM05D005958 ORTHO05D007469 2.6e-41 174.1 236 42.4
Dinv08433 Davidia involucrata HOM05D005958 ORTHO05D007469 2.2e-40 171.0 491 30.1
ATR0174G041 Amborella trichopoda HOM05D005958 ORTHO05D007469 1.2e-35 155.2 380 34.2
Eucgr.K02964 Eucalyptus grandis HOM05D005958 ORTHO05D007469 9.9e-33 145.6 358 33.8
Atru.chr8.2302 Acer truncatum HOM05D005958 ORTHO05D007469 1.2e-27 128.6 316 33.5
SalBow5G4815 Salvia bowleyana HOM05D005958 ORTHO05D007469 5.4e-23 113.2 410 28.3
CAN.G122.2 Capsicum annuum HOM05D005958 ORTHO05D007469 9.3e-15 85.9 166 34.3
Cpa.g.sc120.44 Carica papaya HOM05D005958 ORTHO05D007469 3.0e-13 80.9 112 41.1
SEGI_12970 Sequoiadendron giganteum HOM05D000063 ORTHO05D006939 2.1e-11 74.7 477 23.3
Lalb_Chr23g0270931 Lupinus albus HOM05D000063 ORTHO05D006939 1.1e-10 72.4 410 25.1
Lalb_Chr23g0270961 Lupinus albus HOM05D000063 ORTHO05D006939 1.4e-10 72.0 410 25.1
Peaxi162Scf00650g00223 Petunia axillaris HOM05D000063 ORTHO05D006939 1.8e-10 71.6 409 26.7
DCAR_014105 Daucus carota HOM05D000063 ORTHO05D006939 2.4e-10 71.2 461 26.2
Thecc.08G121400 Theobroma cacao HOM05D000063 ORTHO05D006939 1.2e-09 68.9 385 27.3
TWI56G1247 Tripterygium wilfordii HOM05D000063 ORTHO05D006939 1.5e-09 68.6 405 26.4
CsaV3_6G003620 Cucumis sativus L. HOM05D000063 ORTHO05D006939 3.4e-09 67.4 404 25.7
Ciclev10000940m.g Citrus clementina HOM05D000063 ORTHO05D006939 7.6e-09 66.2 425 25.9
Manes.02G161100 Manihot esculenta HOM05D000063 ORTHO05D006939 7.6e-09 66.2 387 26.6
Medtr5g058860 Medicago truncatula HOM05D000063 ORTHO05D006939 7.6e-09 66.2 306 27.5
MELO3C011591.2 Cucumis melo HOM05D000063 ORTHO05D006939 9.9e-09 65.9 404 26.0
Duzib093G0593 Durio zibethinus HOM05D000063 ORTHO05D006939 9.9e-09 65.9 407 25.8
Oeu047937.1 Olea europaea HOM05D000063 ORTHO05D006939 9.9e-09 65.9 383 26.1
Oeu047938.1 Olea europaea HOM05D000063 ORTHO05D006939 9.9e-09 65.9 383 26.1
Gohir.D05G235900 Gossypium hirsutum HOM05D000063 ORTHO05D006939 1.3e-08 65.5 382 26.2
RcHm_v2.0_Chr6g0295411 Rosa chinensis HOM05D000063 ORTHO05D006939 1.3e-08 65.5 471 25.7
TAR625G1273 Trochodendron aralioides HOM05D000063 ORTHO05D006939 1.3e-08 65.5 401 25.7
Gorai.009G244200 Gossypium raimondii HOM05D000063 ORTHO05D006939 1.7e-08 65.1 382 26.2
PGR044G1484 Punica granatum HOM05D000063 ORTHO05D006939 1.7e-08 65.1 428 24.8
TAR376G0211 Trochodendron aralioides HOM05D000063 ORTHO05D006939 1.7e-08 65.1 422 24.9
Atru.chr13.1410 Acer truncatum HOM05D000063 ORTHO05D006939 2.2e-08 64.7 424 25.7
MD15G1353200 Malus domestica HOM05D000063 ORTHO05D006939 3.8e-08 63.9 417 25.4
Potri.005G175300 Populus trichocarpa HOM05D000063 ORTHO05D006939 3.8e-08 63.9 296 27.4
CSS0020262 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D006939 4.9e-08 63.5 458 24.9
ClCG00G002990 Citrullus lanatus HOM05D000063 ORTHO05D006939 4.9e-08 63.5 407 25.3
ClCG08G005520 Citrullus lanatus HOM05D000063 ORTHO05D006939 4.9e-08 63.5 407 25.3
Nitab4.5_0009190g0010 Nicotiana tabacum HOM05D000063 ORTHO05D006939 4.9e-08 63.5 391 26.1
Psat2g077640 Pisum sativum HOM05D000063 ORTHO05D006939 4.9e-08 63.5 304 28.3
Prupe.1G501500 Prunus persica HOM05D000063 ORTHO05D006939 6.4e-08 63.2 417 25.4
Sabra05G0132200 Salix brachista HOM05D000063 ORTHO05D006939 6.4e-08 63.2 297 27.6
VMungo1309G2683 Vigna mungo HOM05D000063 ORTHO05D006939 6.4e-08 63.2 299 27.8
PSO170G3365 Papaver somniferum HOM05D000063 ORTHO05D006939 8.4e-08 62.8 466 23.8
Rhsim06G0105300 Rhododendron simsii HOM05D000063 ORTHO05D006939 8.4e-08 62.8 386 25.1
PSO782G3880 Papaver somniferum HOM05D000063 ORTHO05D006939 1.1e-07 62.4 466 24.2
Glyma.13G081700 Glycine max HOM05D000063 ORTHO05D006939 1.4e-07 62.0 383 26.4
CiPaw.05G224400 Carya illinoinensis HOM05D000063 ORTHO05D006939 1.9e-07 61.6 389 25.4
FAN27G1014 Fragaria x ananassa HOM05D000063 ORTHO05D006939 1.9e-07 61.6 470 24.9
Glyma.06G110800 Glycine max HOM05D000063 ORTHO05D006939 1.9e-07 61.6 298 29.2
Lj4P618T2 Lonicera japonica HOM05D000063 ORTHO05D006939 1.9e-07 61.6 299 27.4
Manes.18G075300 Manihot esculenta HOM05D000063 ORTHO05D006939 4.2e-07 60.5 299 27.8
Phvul.008G165200 Phaseolus vulgaris HOM05D000063 ORTHO05D006939 4.2e-07 60.5 376 25.3
Duzib041G0179 Durio zibethinus HOM05D000063 ORTHO05D006939 5.5e-07 60.1 385 26.0
MD08G1167600 Malus domestica HOM05D000063 ORTHO05D006939 7.1e-07 59.7 420 26.0
SMO351G0504 Selaginella moellendorffii HOM05D000063 ORTHO05D006939 7.1e-07 59.7 378 23.8
HanXRQChr15g0484601 Helianthus annuus HOM05D000063 ORTHO05D006939 9.3e-07 59.3 430 23.7
Hma1.2p1_0248F.1_g102030 Hydrangea macrophylla HOM05D000063 ORTHO05D006939 1.2e-06 58.9 388 26.5
Phvul.009G122700 Phaseolus vulgaris HOM05D000063 ORTHO05D006939 1.2e-06 58.9 302 27.5
TWI56G1233 Tripterygium wilfordii HOM05D000063 ORTHO05D006939 1.2e-06 58.9 401 25.2
VMungo0647G0062 Vigna mungo HOM05D000063 ORTHO05D006939 1.2e-06 58.9 472 24.4
Eucgr.L03490 Eucalyptus grandis HOM05D000063 ORTHO05D006939 1.6e-06 58.5 457 25.4
Sabra02G0067500 Salix brachista HOM05D000063 ORTHO05D006939 2.1e-06 58.2 301 28.6
TWI36G0962 Tripterygium wilfordii HOM05D000063 ORTHO05D006939 2.7e-06 57.8 299 27.4
Cpa.g.sc36.32 Carica papaya HOM05D000063 ORTHO05D006939 3.5e-06 57.4 389 27.0
Gohir.D06G043700 Gossypium hirsutum HOM05D000063 ORTHO05D006939 3.5e-06 57.4 384 25.0
Nitab4.5_0000193g0120 Nicotiana tabacum HOM05D000063 ORTHO05D006939 3.5e-06 57.4 416 25.2
Gorai.010G048800 Gossypium raimondii HOM05D000063 ORTHO05D006939 4.6e-06 57.0 385 25.7
Ca_03721_v3 Cicer arietinum L. HOM05D000063 ORTHO05D006939 6.0e-06 56.6 304 26.0
Lj1g0016752 Lotus japonicus HOM05D000063 ORTHO05D006939 7.9e-06 56.2 320 25.9


User provided reference genes

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