Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 2.3e-41 171.8 87 100.0
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 5.1e-20 100.9 80 61.2
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 5.1e-20 100.9 80 61.2
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.1e-19 99.8 80 67.5
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 8.1e-18 93.6 55 78.2
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 1.8e-17 92.4 57 71.9
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.1e-17 91.7 69 60.9
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 4.0e-17 91.3 69 60.9
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 4.0e-17 91.3 69 60.9
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 6.8e-17 90.5 80 55.0
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 8.9e-17 90.1 55 69.1
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 1.5e-16 89.4 80 55.0
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 2.0e-16 89.0 76 59.2
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 4.4e-16 87.8 77 53.2
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 7.6e-16 87.0 76 53.9
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 1.7e-15 85.9 77 53.2
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 1.7e-15 85.9 56 66.1
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 4.9e-15 84.3 53 69.8
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 6.4e-15 84.0 79 53.2
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 6.4e-15 84.0 69 53.6
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 6.4e-15 84.0 79 50.6
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 8.4e-15 83.6 79 54.4
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 8.4e-15 83.6 79 53.2
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 8.4e-15 83.6 55 65.5
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 1.4e-14 82.8 53 64.2
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 1.4e-14 82.8 53 64.2
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.4e-14 82.8 58 69.0
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 1.4e-14 82.8 52 69.2
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.9e-14 82.4 58 67.2
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.9e-14 82.4 82 53.7
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.9e-14 82.4 82 53.7
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 1.9e-14 82.4 77 51.9
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 3.2e-14 81.6 59 64.4
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 3.2e-14 81.6 52 67.3
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 3.2e-14 81.6 68 51.5
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 4.2e-14 81.3 51 70.6
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 5.4e-14 80.9 71 57.7
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 5.4e-14 80.9 52 63.5
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 7.1e-14 80.5 66 59.1
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 7.1e-14 80.5 76 53.9
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 9.2e-14 80.1 67 61.2
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 9.2e-14 80.1 78 59.0
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 1.2e-13 79.7 79 49.4
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 1.6e-13 79.3 65 53.8
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 2.1e-13 79.0 79 49.4
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 2.7e-13 78.6 56 60.7
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 3.5e-13 78.2 51 62.7
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 3.5e-13 78.2 77 51.9
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 3.5e-13 78.2 51 64.7
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 6.0e-13 77.4 77 50.6
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 7.8e-13 77.0 55 56.4
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 1.0e-12 76.6 76 50.0
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.0e-12 76.6 51 60.8
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.0e-12 76.6 51 60.8
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.0e-12 76.6 59 61.0
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.3e-12 76.3 51 60.8
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.3e-12 76.3 53 62.3
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 1.3e-12 76.3 81 49.4
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 1.7e-12 75.9 51 60.8
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 1.7e-12 75.9 51 60.8
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 2.3e-12 75.5 73 50.7
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 3.9e-12 74.7 63 54.0
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 8.7e-12 73.6 80 55.0
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 1.1e-11 73.2 59 55.9
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 1.1e-11 73.2 59 55.9
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 1.5e-11 72.8 63 52.4
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 1.5e-11 72.8 79 48.1
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 1.9e-11 72.4 68 51.5
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 3.3e-11 71.6 57 50.9
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 5.6e-11 70.9 56 55.4
Cpa.g.sc19.256 Carica papaya HOM05D006892 ORTHO05D008592 7.3e-11 70.5 57 59.6
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 1.3e-10 69.7 54 59.3
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 1.6e-10 69.3 79 48.1
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 2.8e-10 68.6 54 51.9
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 4.8e-10 67.8 84 48.8
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 4.8e-10 67.8 93 43.0
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 6.2e-10 67.4 78 41.0
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 8.1e-10 67.0 60 53.3
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 1.1e-09 66.6 48 68.8
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 1.4e-09 66.2 78 46.2
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.4e-09 66.2 37 64.9
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.4e-09 66.2 77 41.6
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 2.4e-09 65.5 43 67.4
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 2.4e-09 65.5 72 47.2
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 4.0e-09 64.7 58 55.2
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 5.3e-09 64.3 79 46.8
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 5.3e-09 64.3 57 54.4
TAR633G0009 Trochodendron aralioides HOM05D006892 ORTHO05D414936 5.3e-09 64.3 53 52.8
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 6.9e-09 63.9 82 45.1
TPR.G33720 Trifolium pratense HOM05D006892 ORTHO05D008592 6.9e-09 63.9 82 39.0
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 9.0e-09 63.5 43 65.1
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 1.2e-08 63.2 62 51.6
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.5e-08 62.8 44 59.1
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 2.0e-08 62.4 38 65.8
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 3.4e-08 61.6 52 50.0
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 4.4e-08 61.2 80 42.5
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 9.9e-08 60.1 38 63.2
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 1.3e-07 59.7 58 48.3
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 1.3e-07 59.7 55 54.5
Sc07g0007010 Simmondsia chinensis HOM05D006892 ORTHO05D008592 2.2e-07 58.9 59 52.5
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 2.9e-07 58.5 55 49.1
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 2.9e-07 58.5 43 58.1
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 3.8e-07 58.2 37 64.9
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 6.4e-07 57.4 56 41.1
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 6.4e-07 57.4 106 34.9
Sopen09g006190 Solanum pennellii HOM05D006892 ORTHO05D008592 6.4e-07 57.4 68 50.0
HPP92_019858 Vanilla planifolia HOM05D006892 ORTHO05D008592 6.4e-07 57.4 56 44.6
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 8.4e-07 57.0 61 45.9
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 8.4e-07 57.0 73 39.7
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 8.4e-07 57.0 37 59.5
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 2.4e-06 55.5 35 60.0
arahy.Tifrunner.gnm1.ann1.F5D7CA Arachis hypogaea HOM05D006892 ORTHO05D008592 4.2e-06 54.7 57 43.9
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 9.3e-06 53.5 43 48.8


User provided reference genes

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