Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 3.8e-114 414.8 211 100.0
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 2.1e-83 312.8 209 78.5
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 1.7e-82 309.7 197 79.2
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 1.7e-82 309.7 211 76.8
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 7.6e-78 294.3 196 74.5
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 6.0e-75 284.6 201 71.1
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 7.8e-75 284.3 203 73.9
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 1.0e-74 283.9 198 74.7
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.3e-74 282.7 197 74.1
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.3e-74 282.7 197 74.1
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.5e-73 279.3 200 73.5
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 2.8e-72 275.8 194 74.7
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.1e-71 273.9 206 70.4
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.1e-71 273.9 195 72.8
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.1e-71 272.3 206 70.4
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 4.0e-71 271.9 208 69.7
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.0e-71 271.9 207 70.0
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.0e-71 271.9 208 69.7
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.2e-70 270.4 199 71.9
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.2e-70 270.4 199 71.9
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 2.6e-70 269.2 205 70.7
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 3.4e-70 268.9 210 68.6
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 3.4e-70 268.9 196 71.9
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 4.4e-70 268.5 203 70.9
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 5.8e-70 268.1 217 68.2
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 9.9e-70 267.3 199 71.4
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.7e-69 266.5 199 69.3
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 8.4e-69 264.2 197 71.6
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 9.3e-68 260.8 196 69.4
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 9.3e-68 260.8 195 66.7
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.2e-67 260.4 196 70.4
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 3.5e-67 258.8 206 69.4
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 4.6e-67 258.5 196 70.4
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 6.0e-67 258.1 206 69.4
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 7.9e-67 257.7 199 68.3
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 1.0e-66 257.3 191 66.5
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 1.3e-66 256.9 205 66.3
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 1.7e-66 256.5 203 69.5
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 2.3e-66 256.1 207 65.2
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.0e-66 255.8 194 70.1
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 8.7e-66 254.2 205 65.9
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 1.9e-65 253.1 192 67.7
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 1.9e-65 253.1 193 67.4
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 1.9e-65 253.1 190 66.3
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 2.5e-65 252.7 202 67.3
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 3.3e-65 252.3 199 64.8
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 5.6e-65 251.5 216 64.8
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 7.3e-65 251.1 199 64.3
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 1.6e-64 250.0 195 68.7
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 2.8e-64 249.2 197 64.5
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 6.2e-64 248.1 225 62.2
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 6.2e-64 248.1 208 64.9
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 2.6e-62 242.7 202 64.4
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 3.4e-62 242.3 209 64.6
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 3.4e-62 242.3 218 62.4
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 5.8e-62 241.5 209 63.2
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 9.9e-62 240.7 193 65.8
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 9.9e-62 240.7 218 61.9
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 1.3e-61 240.4 193 64.2
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.7e-61 240.0 222 61.3
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 2.9e-61 239.2 196 65.8
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 3.8e-61 238.8 194 67.0
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 6.4e-61 238.0 195 66.2
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 8.4e-61 237.7 196 65.3
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.1e-60 237.3 211 62.6
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 1.4e-60 236.9 216 61.6
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 1.9e-60 236.5 199 63.3
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 2.4e-60 236.1 192 64.6
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 3.2e-60 235.7 198 64.1
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 3.2e-60 235.7 209 62.7
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 5.4e-60 235.0 210 61.9
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 7.1e-60 234.6 196 64.8
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 7.1e-60 234.6 196 64.8
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 7.1e-60 234.6 211 62.6
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 9.3e-60 234.2 205 61.5
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 9.3e-60 234.2 209 60.8
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.2e-59 233.8 188 63.3
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 2.7e-59 232.6 212 61.3
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 2.7e-59 232.6 200 63.0
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 4.6e-59 231.9 201 63.2
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 6.0e-59 231.5 228 56.6
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 1.0e-58 230.7 192 62.0
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 1.3e-58 230.3 199 62.3
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.8e-58 229.9 215 59.5
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 6.7e-58 228.0 213 59.2
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 8.7e-58 227.6 193 63.2
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 1.1e-57 227.3 209 58.4
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.9e-57 226.5 197 64.0
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 1.9e-57 226.5 231 58.9
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 5.6e-57 224.9 201 61.2
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 7.4e-57 224.6 214 59.3
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.3e-56 223.8 197 60.9
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 1.6e-56 223.4 211 57.3
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 1.1e-55 220.7 207 56.0
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.2e-54 217.2 216 56.9
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 3.4e-54 215.7 209 58.4
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 4.5e-54 215.3 210 57.6
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 4.5e-54 215.3 234 54.3
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.9e-53 212.6 194 60.3
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 6.5e-53 211.5 223 53.4
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 6.5e-53 211.5 183 65.0
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.4e-52 210.3 159 69.2
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 9.3e-52 207.6 206 58.7
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.2e-51 207.2 156 68.6
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 1.3e-50 203.8 210 54.8
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 3.0e-50 202.6 133 80.5
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 1.9e-49 199.9 224 52.7
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 2.1e-48 196.4 195 56.9
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 1.4e-47 193.7 206 53.4
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 2.0e-46 189.9 211 51.7
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 4.5e-46 188.7 205 53.7
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 2.9e-45 186.0 214 51.4
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 3.0e-42 176.0 186 56.5
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 3.0e-42 176.0 211 49.3
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.5e-41 172.9 131 69.5
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 2.8e-40 169.5 183 49.7
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.4e-39 167.2 175 52.0
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 2.4e-39 166.4 213 46.9
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 9.0e-39 164.5 152 57.2
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 2.5e-36 156.4 139 61.2
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 2.5e-36 156.4 213 43.7
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 3.2e-36 156.0 191 43.5
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 7.2e-36 154.8 212 44.8
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 7.2e-36 154.8 194 46.9
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 1.6e-35 153.7 219 41.1
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 4.6e-35 152.1 180 47.8
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 3.0e-34 149.4 197 48.7
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 5.1e-34 148.7 209 43.5
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 1.1e-33 147.5 114 64.0
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 2.0e-33 146.7 123 58.5
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 5.7e-33 145.2 199 46.2
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 9.7e-33 144.4 144 57.6
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.8e-32 142.9 196 42.9
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 3.1e-31 139.4 174 43.7
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.0e-29 134.4 123 63.4
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 5.0e-29 132.1 97 67.0
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 8.5e-29 131.3 123 62.6
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 3.9e-26 122.5 158 41.8
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 6.7e-26 121.7 186 43.0
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 3.3e-25 119.4 200 37.5
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 2.8e-24 116.3 178 39.3
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.1e-23 114.4 173 39.9
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 5.3e-23 112.1 91 48.4
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 5.0e-21 105.5 115 59.1
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 8.5e-21 104.8 116 45.7
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 1.2e-19 100.9 112 60.7
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 1.2e-19 100.9 135 35.6
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 6.1e-19 98.6 186 38.2
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.4e-18 97.4 87 48.3
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 3.0e-18 96.3 125 40.8
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 6.7e-18 95.1 128 39.1
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 8.8e-18 94.7 96 50.0
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 2.6e-14 83.2 175 37.7
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 5.9e-14 82.0 111 43.2
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 1.9e-12 77.0 90 56.7
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 4.2e-12 75.9 68 58.8
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 2.7e-11 73.2 68 57.4
CiPaw.05G236000 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.4e-10 70.9 73 61.6
Ah.00g000610 Amaranthus hybridus HOM05D004429 ORTHO05D005583 2.7e-06 56.6 73 46.6
AT3G53342 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 2.7e-06 56.6 60 56.7
AT4G18692 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 2.7e-06 56.6 60 56.7


User provided reference genes

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