Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 3.9e-128 461.5 228 100.0
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.6e-97 359.8 223 79.8
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 2.7e-89 332.4 223 76.7
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 2.1e-86 322.8 251 66.5
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 4.5e-84 315.1 205 71.2
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 2.1e-81 306.2 214 68.2
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 3.0e-80 302.4 206 69.9
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 3.9e-80 302.0 220 68.2
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 6.7e-80 301.2 185 75.7
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 1.9e-79 299.7 222 66.7
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 4.3e-79 298.5 206 68.4
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 1.6e-78 296.6 223 65.0
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 2.8e-78 295.8 224 62.5
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 6.3e-78 294.7 218 64.7
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 6.3e-78 294.7 224 62.9
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 8.2e-78 294.3 202 69.3
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 1.5e-76 290.0 216 65.3
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 1.5e-76 290.0 226 62.8
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 3.4e-76 288.9 225 63.1
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 4.5e-76 288.5 213 64.3
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 5.9e-76 288.1 226 62.4
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 1.0e-75 287.3 215 62.3
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 1.3e-75 287.0 220 62.7
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.2e-75 286.2 220 62.3
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 3.8e-75 285.4 220 64.5
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 1.9e-74 283.1 221 60.6
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 1.9e-74 283.1 225 61.8
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 3.2e-74 282.3 212 63.2
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 7.2e-74 281.2 211 63.5
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 1.2e-73 280.4 218 62.8
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 2.1e-73 279.6 197 66.5
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 3.6e-73 278.9 218 61.0
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 6.1e-73 278.1 222 61.3
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 1.0e-72 277.3 229 62.4
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 1.4e-72 276.9 212 62.3
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 6.7e-72 274.6 203 62.6
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 1.1e-71 273.9 223 61.9
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 4.3e-71 271.9 269 55.0
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 4.3e-71 271.9 224 61.6
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 5.7e-71 271.6 219 60.3
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 5.7e-71 271.6 212 61.8
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 7.4e-71 271.2 206 63.1
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 7.4e-71 271.2 224 62.1
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 9.7e-71 270.8 212 61.3
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 1.3e-70 270.4 210 63.3
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 2.2e-70 269.6 215 60.9
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 2.8e-70 269.2 230 60.0
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 6.3e-70 268.1 223 60.5
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 2.4e-69 266.2 218 59.2
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 6.9e-69 264.6 224 60.7
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 6.9e-69 264.6 227 58.1
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 9.1e-69 264.2 223 60.1
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 2.0e-68 263.1 204 60.8
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 4.5e-68 261.9 224 61.2
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 1.0e-67 260.8 212 61.8
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 1.3e-67 260.4 214 57.9
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 2.9e-67 259.2 241 56.8
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 3.8e-67 258.8 223 60.5
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 2.5e-66 256.1 223 56.1
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 2.5e-66 256.1 218 57.8
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 3.2e-66 255.8 223 59.2
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 4.2e-66 255.4 210 59.0
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 4.2e-66 255.4 224 57.1
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 5.5e-66 255.0 208 58.7
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 5.5e-66 255.0 216 57.9
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.2e-65 253.8 216 58.8
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 3.6e-65 252.3 193 62.2
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 4.7e-65 251.9 205 59.5
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 6.1e-65 251.5 222 55.9
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 7.9e-65 251.1 194 59.3
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 1.4e-64 250.4 205 59.5
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.4e-64 250.4 224 57.6
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 1.4e-64 250.4 186 66.7
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.8e-64 250.0 244 53.7
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 3.0e-64 249.2 216 57.4
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 5.1e-64 248.4 216 56.5
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 6.7e-64 248.1 211 55.9
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 6.7e-64 248.1 214 57.9
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 8.8e-64 247.7 215 55.8
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 8.8e-64 247.7 213 56.8
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.1e-63 247.3 210 58.1
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 2.0e-63 246.5 223 59.2
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 2.6e-63 246.1 224 56.7
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 2.6e-63 246.1 222 58.1
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 3.3e-63 245.7 211 55.5
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 4.4e-63 245.4 214 58.4
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 4.4e-63 245.4 224 58.0
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 5.7e-63 245.0 232 54.3
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 7.4e-63 244.6 213 56.8
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 7.4e-63 244.6 223 58.3
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 7.4e-63 244.6 223 58.3
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 9.7e-63 244.2 244 52.9
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 9.7e-63 244.2 223 57.8
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 1.3e-62 243.8 228 56.1
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 2.2e-62 243.0 226 56.2
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 2.8e-62 242.7 226 56.2
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 4.8e-62 241.9 218 55.5
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 6.3e-62 241.5 194 60.8
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 8.2e-62 241.1 223 57.8
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 4.1e-61 238.8 201 56.2
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 5.3e-61 238.4 230 53.5
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 7.0e-61 238.0 224 53.6
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 7.0e-61 238.0 224 54.5
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 7.0e-61 238.0 232 53.4
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.2e-60 237.3 223 57.8
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 1.5e-60 236.9 209 56.9
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.5e-60 236.9 206 57.3
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 2.6e-60 236.1 224 54.5
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 2.6e-60 236.1 224 54.5
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 3.5e-60 235.7 224 54.0
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 5.9e-60 235.0 197 59.9
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 1.0e-59 234.2 224 54.0
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 1.7e-59 233.4 201 59.2
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 1.7e-59 233.4 262 46.9
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 2.2e-59 233.0 214 54.2
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 6.5e-59 231.5 212 55.7
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 3.2e-58 229.2 162 67.9
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 9.4e-58 227.6 223 54.3
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 1.6e-57 226.9 201 54.2
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 6.1e-57 224.9 216 53.7
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.0e-56 224.2 207 50.7
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 1.8e-56 223.4 195 55.9
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 2.3e-56 223.0 202 55.4
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 5.2e-56 221.9 200 54.0
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 1.1e-55 220.7 232 50.4
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.4e-53 213.8 187 56.7
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 9.1e-53 211.1 139 69.8
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 3.5e-52 209.1 219 49.3
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 1.1e-50 204.1 211 49.8
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 1.1e-50 204.1 211 49.3
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 1.2e-49 200.7 210 48.6
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 1.2e-49 200.7 195 50.8
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 4.7e-49 198.7 146 63.0
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 8.8e-48 194.5 211 46.0
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 1.5e-47 193.7 206 46.1
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 3.4e-47 192.6 211 46.0
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 5.7e-47 191.8 211 47.9
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 4.8e-46 188.7 202 49.5
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 8.3e-46 188.0 204 46.6
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 5.4e-45 185.3 238 42.0
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 7.0e-45 184.9 226 43.4
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 1.2e-44 184.1 210 46.2
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 2.0e-44 183.3 183 46.4
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 7.7e-44 181.4 229 43.2
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 7.7e-44 181.4 210 46.2
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 1.0e-43 181.0 210 45.7
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 1.9e-42 176.8 195 48.2
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 4.7e-41 172.2 220 41.4
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.4e-40 170.6 214 44.4
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.4e-40 170.6 214 44.4
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 7.0e-37 158.3 188 45.2
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 1.2e-36 157.5 137 54.0
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 2.0e-36 156.8 135 55.6
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 2.9e-35 152.9 250 38.4
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 1.6e-33 147.1 159 47.8
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 8.9e-32 141.4 182 41.8
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 7.5e-31 138.3 138 46.4
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 1.7e-27 127.1 226 34.5
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 2.3e-27 126.7 212 35.4
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 1.5e-26 124.0 139 43.9
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 1.6e-25 120.6 139 40.3
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 3.4e-23 112.8 129 44.2
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 2.2e-22 110.2 104 53.8
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.6e-20 104.0 161 36.6
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 3.6e-17 92.8 87 57.5
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.1e-16 91.3 67 61.2
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 9.2e-13 78.2 68 54.4
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.5e-12 76.3 60 60.0
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 1.7e-11 73.9 73 49.3
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 3.0e-11 73.2 71 53.5
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 1.1e-10 71.2 68 51.5
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 7.3e-10 68.6 109 34.9
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 2.1e-09 67.0 70 51.4
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 2.1e-09 67.0 68 50.0
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 1.5e-07 60.8 109 33.9
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 2.0e-07 60.5 74 41.9
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 5.8e-07 58.9 75 46.7
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 9.9e-07 58.2 69 43.5
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 2.2e-06 57.0 88 42.0
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.7e-06 56.2 82 41.5
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 3.7e-06 56.2 77 40.3
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 4.9e-06 55.8 69 40.6
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 6.4e-06 55.5 73 38.4
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 6.4e-06 55.5 74 41.9
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 8.4e-06 55.1 70 48.6


User provided reference genes

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