Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G139300 Carya illinoinensis HOM05D007171 ORTHO05D008946 6.6e-128 460.7 227 100.0
Cfa017468 Carpinus fangiana HOM05D007171 ORTHO05D008946 1.7e-91 339.7 227 71.4
QL07p045896 Quercus lobata HOM05D007171 ORTHO05D008946 6.0e-89 331.3 229 70.3
Hma1.2p1_0350F.1_g132480 Hydrangea macrophylla HOM05D007171 ORTHO05D008946 1.1e-82 310.5 224 64.3
Manes.09G071900 Manihot esculenta HOM05D007171 ORTHO05D008946 2.7e-81 305.8 228 64.0
CSS0013206 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 6.0e-81 304.7 224 63.8
CSS0034218 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 6.0e-81 304.7 224 63.8
Dinv37232 Davidia involucrata HOM05D007171 ORTHO05D008946 7.9e-81 304.3 230 64.3
GSVIVG01025575001 Vitis vinifera HOM05D007171 ORTHO05D008946 1.0e-80 303.9 211 70.6
Actinidia11236 Actinidia chinensis HOM05D007171 ORTHO05D008946 8.7e-80 300.8 205 66.8
MD04G1110400 Malus domestica HOM05D007171 ORTHO05D008946 2.5e-79 299.3 238 62.6
Eucgr.K03186 Eucalyptus grandis HOM05D007171 ORTHO05D008946 9.6e-79 297.4 220 66.4
Lj2C103T12 Lonicera japonica HOM05D007171 ORTHO05D008946 6.9e-77 291.2 227 59.5
Sed0019751 Sechium edule HOM05D007171 ORTHO05D008946 9.0e-77 290.8 228 62.7
Nn2g10565 Nelumbo nucifera HOM05D007171 ORTHO05D008946 3.4e-76 288.9 228 62.3
Haze_20689 Corylus avellana HOM05D007171 ORTHO05D008946 1.3e-75 287.0 209 67.0
Ciclev10012666m.g Citrus clementina HOM05D007171 ORTHO05D008946 2.9e-75 285.8 228 57.5
Prupe.6G245500 Prunus persica HOM05D007171 ORTHO05D008946 2.3e-72 276.2 256 55.1
MELO3C003081.2 Cucumis melo HOM05D007171 ORTHO05D008946 8.7e-72 274.2 228 58.3
PGR004G1538 Punica granatum HOM05D007171 ORTHO05D008946 3.3e-71 272.3 203 61.1
RcHm_v2.0_Chr3g0468061 Rosa chinensis HOM05D007171 ORTHO05D008946 4.8e-70 268.5 239 56.9
Lalb_Chr21g0317461 Lupinus albus HOM05D007171 ORTHO05D008946 1.8e-69 266.5 206 60.7
Atru.chr8.2508 Acer truncatum HOM05D007171 ORTHO05D008946 3.1e-69 265.8 232 54.7
Cc06_g03280 Coffea canephora HOM05D007171 ORTHO05D008946 6.9e-69 264.6 224 56.2
Ca_04434_v3 Cicer arietinum L. HOM05D007171 ORTHO05D008946 1.5e-68 263.5 196 61.7
TWI74G0166 Tripterygium wilfordii HOM05D007171 ORTHO05D008946 1.3e-67 260.4 232 55.6
Medtr6g023885 Medicago truncatula HOM05D007171 ORTHO05D008946 5.0e-67 258.5 196 59.7
Migut.L01644 Erythranthe guttata HOM05D007171 ORTHO05D008946 1.1e-66 257.3 225 56.9
CANSAT80G0026 Cannabis sativa HOM05D007171 ORTHO05D008946 2.5e-66 256.1 233 58.4
Peaxi162Scf00039g00419 Petunia axillaris HOM05D007171 ORTHO05D008946 7.1e-66 254.6 225 52.4
CsaV3_4G024490 Cucumis sativus L. HOM05D007171 ORTHO05D008946 9.3e-66 254.2 228 54.4
Gorai.001G248800 Gossypium raimondii HOM05D007171 ORTHO05D008946 2.7e-65 252.7 228 53.1
MSTRG.10286 Avicennia marina HOM05D007171 ORTHO05D008946 3.5e-65 252.3 194 58.2
ATR0594G074 Amborella trichopoda HOM05D007171 ORTHO05D008946 4.6e-65 251.9 233 50.6
Gohir.A13G095390 Gossypium hirsutum HOM05D007171 ORTHO05D008946 4.6e-65 251.9 228 52.6
Gohir.D13G097200 Gossypium hirsutum HOM05D007171 ORTHO05D008946 6.1e-65 251.5 228 53.1
VMungo0464G1509 Vigna mungo HOM05D007171 ORTHO05D008946 7.9e-65 251.1 214 56.5
HanXRQChr13g0399321 Helianthus annuus HOM05D007171 ORTHO05D008946 1.8e-64 250.0 229 55.5
arahy.Tifrunner.gnm1.ann1.J666ZG Arachis hypogaea HOM05D007171 ORTHO05D008946 3.0e-64 249.2 210 54.8
arahy.Tifrunner.gnm1.ann1.56UX32 Arachis hypogaea HOM05D007171 ORTHO05D008946 1.1e-63 247.3 210 53.8
FvH4_6g14830 Fragaria vesca HOM05D007171 ORTHO05D008946 1.3e-62 243.8 242 53.7
Nitab4.5_0002774g0040 Nicotiana tabacum HOM05D007171 ORTHO05D008946 1.6e-62 243.4 209 56.0
FAN05G0875 Fragaria x ananassa HOM05D007171 ORTHO05D008946 1.1e-61 240.7 241 53.5
FAN09G2349 Fragaria x ananassa HOM05D007171 ORTHO05D008946 2.4e-61 239.6 242 52.9
FAN14G2678 Fragaria x ananassa HOM05D007171 ORTHO05D008946 2.4e-61 239.6 242 52.9
Phvul.004G054300 Phaseolus vulgaris HOM05D007171 ORTHO05D008946 3.1e-61 239.2 197 55.3
EL10Ac7g17274 Beta vulgaris HOM05D007171 ORTHO05D008946 6.9e-61 238.0 214 52.8
Thecc.05G049600 Theobroma cacao HOM05D007171 ORTHO05D008946 9.0e-61 237.7 229 51.1
THA.LOC104826994 Tarenaya hassleriana HOM05D007171 ORTHO05D008946 1.5e-60 236.9 200 56.0
Glyma.05G078000 Glycine max HOM05D007171 ORTHO05D008946 2.0e-60 236.5 213 53.5
FAN02G0958 Fragaria x ananassa HOM05D007171 ORTHO05D008946 2.6e-60 236.1 242 52.5
Glyma.19G071700 Glycine max HOM05D007171 ORTHO05D008946 2.6e-60 236.1 213 54.0
SHI12609 Sapria himalayana HOM05D007171 ORTHO05D008946 3.4e-60 235.7 164 62.2
TPR.G16189 Trifolium pratense HOM05D007171 ORTHO05D008946 3.4e-60 235.7 195 55.9
Lj2g0011641 Lotus japonicus HOM05D007171 ORTHO05D008946 1.3e-59 233.8 224 50.4
SalBow4G3339 Salvia bowleyana HOM05D007171 ORTHO05D008946 1.7e-59 233.4 194 55.2
Nitab4.5_0000643g0130 Nicotiana tabacum HOM05D007171 ORTHO05D008946 3.8e-59 232.3 211 54.5
AUR62036841 Chenopodium quinoa HOM05D007171 ORTHO05D008946 1.1e-58 230.7 208 52.4
Solyc09g005930.4 Solanum lycopersicum HOM05D007171 ORTHO05D008946 5.5e-58 228.4 218 50.0
PGSC0003DMG400023935 Solanum tuberosum HOM05D007171 ORTHO05D008946 7.2e-58 228.0 218 50.0
Sopen09g001790 Solanum pennellii HOM05D007171 ORTHO05D008946 9.4e-58 227.6 218 50.0
MBI14_g46135_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 1.2e-57 227.3 303 40.9
AUR62042289 Chenopodium quinoa HOM05D007171 ORTHO05D008946 2.7e-57 226.1 199 53.8
Lsat_1_v5_gn_6_33220 Lactuca sativa HOM05D007171 ORTHO05D008946 3.6e-57 225.7 205 53.7
DCAR_017747 Daucus carota HOM05D007171 ORTHO05D008946 6.7e-56 221.5 226 48.2
CDE04G2331 Ceratophyllum demersum HOM05D007171 ORTHO05D008946 2.2e-54 216.5 190 53.7
CAN.G350.19 Capsicum annuum HOM05D007171 ORTHO05D008946 1.4e-53 213.8 225 49.3
Duzib128G0424 Durio zibethinus HOM05D007171 ORTHO05D008946 4.1e-53 212.2 229 48.5
BcaC06g32009 Brassica carinata HOM05D007171 ORTHO05D008946 2.6e-52 209.5 237 45.6
ECA233G5714 Erigeron canadensis HOM05D007171 ORTHO05D008946 5.9e-52 208.4 167 59.3
Carub.0006s0150 Capsella rubella HOM05D007171 ORTHO05D008946 1.3e-51 207.2 230 46.1
Thhalv10014568m.g Eutrema salsugineum HOM05D007171 ORTHO05D008946 2.9e-51 206.1 236 44.5
BraA10t45334Z Brassica rapa HOM05D007171 ORTHO05D008946 6.5e-51 204.9 238 44.5
A10p32970 Brassica napus HOM05D007171 ORTHO05D008946 8.5e-51 204.5 238 44.5
BolC9t60129H Brassica oleracea HOM05D007171 ORTHO05D008946 8.5e-51 204.5 238 44.5
AT5G02740 Arabidopsis thaliana HOM05D007171 ORTHO05D008946 1.9e-50 203.4 201 49.8
Sc07g0006190 Simmondsia chinensis HOM05D007171 ORTHO05D008946 1.9e-50 203.4 175 54.9
Aa31LG1G22150 Aethionema arabicum HOM05D007171 ORTHO05D008946 2.5e-50 203.0 244 44.7
BcaNung03278 Brassica carinata HOM05D007171 ORTHO05D008946 4.2e-50 202.2 237 43.5
C09p73940 Brassica napus HOM05D007171 ORTHO05D008946 3.6e-49 199.1 238 43.7
Potri.006G215800 Populus trichocarpa HOM05D007171 ORTHO05D008946 3.6e-49 199.1 256 43.4
AL6G11990 Arabidopsis lyrata HOM05D007171 ORTHO05D008946 4.7e-49 198.7 201 48.3
unitig_0.g696 Utricularia gibba HOM05D007171 ORTHO05D008946 1.0e-48 197.6 213 46.0
SGA_v2.0_scaffold94G28650 Striga asiatica HOM05D007171 ORTHO05D008946 3.0e-48 196.1 227 42.7
Os03g0282900 Oryza sativa ssp. japonica HOM05D007171 ORTHO05D008946 2.8e-46 189.5 238 45.0
Zm00001eb397290 Zea mays HOM05D007171 ORTHO05D008946 3.7e-46 189.1 208 46.2
PSO384G3756 Papaver somniferum HOM05D007171 ORTHO05D008946 6.3e-46 188.3 185 47.6
PSO339G0903 Papaver somniferum HOM05D007171 ORTHO05D008946 4.1e-45 185.7 185 47.0
SEGI_11390 Sequoiadendron giganteum HOM05D007171 ORTHO05D008946 4.2e-42 175.6 193 48.2
Sabra06G0166400 Salix brachista HOM05D007171 ORTHO05D008946 1.2e-41 174.1 195 47.2
vmacro20092 Vaccinium macrocarpon HOM05D007171 ORTHO05D008946 1.2e-41 174.1 152 58.6
Psat1g085840 Pisum sativum HOM05D007171 ORTHO05D008946 1.3e-38 164.1 116 62.9
COL.COLO4_10310 Corchorus olitorius HOM05D007171 ORTHO05D008946 8.2e-38 161.4 222 41.9
ClCG04G008670 Citrullus lanatus HOM05D007171 ORTHO05D008946 4.0e-32 142.5 183 44.8
Oeu035685.1 Olea europaea HOM05D007171 ORTHO05D008946 9.8e-31 137.9 82 72.0
HPP92_001690 Vanilla planifolia HOM05D007171 ORTHO05D008946 2.7e-25 119.8 122 44.3
CARHR210640 Cardamine hirsuta HOM05D007171 ORTHO05D008946 4.7e-25 119.0 160 40.0
Aqoxy2G01927 Aquilegia oxysepala HOM05D007171 ORTHO05D008946 6.1e-25 118.6 111 51.4
TAR383G0190 Trochodendron aralioides HOM05D007171 ORTHO05D008946 6.1e-25 118.6 114 51.8
Ah.08g212060 Amaranthus hybridus HOM05D007171 ORTHO05D008946 9.1e-21 104.8 87 46.0
MBI14_g16337_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 1.1e-18 97.8 65 69.2
Ah.08g212070 Amaranthus hybridus HOM05D007171 ORTHO05D008946 2.5e-18 96.7 90 54.4
Mapoly0061s0086 Marchantia polymorpha HOM05D007171 ORTHO05D008946 2.8e-17 93.2 200 30.5
HanXRQChr13g0399281 Helianthus annuus HOM05D007171 ORTHO05D008946 3.7e-14 82.8 74 52.7
SMO358G0627 Selaginella moellendorffii HOM05D007171 ORTHO05D008946 1.4e-13 80.9 186 30.6
Oeu008469.1 Olea europaea HOM05D007171 ORTHO05D008946 3.9e-11 72.8 89 42.7


User provided reference genes

Program Settings