Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 8.3e-132 474.2 327 100.0
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 3.4e-69 266.2 315 57.5
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 3.8e-68 262.7 313 56.9
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 2.2e-60 236.9 319 53.9
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 5.7e-40 169.1 327 41.9
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 1.7e-36 157.5 329 40.7
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 8.5e-36 155.2 329 40.4
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 2.0e-32 144.1 335 38.8
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 3.3e-32 143.3 326 40.2
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.1e-30 138.3 333 39.0
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 1.4e-30 137.9 332 38.0
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 1.6e-29 134.4 326 38.0
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.0e-29 134.0 328 39.6
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 3.5e-29 133.3 329 38.3
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 3.2e-27 126.7 325 40.0
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 3.2e-27 126.7 243 46.1
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 4.2e-27 126.3 328 38.4
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 9.4e-27 125.2 342 37.1
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 2.7e-26 123.6 315 38.7
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 3.6e-26 123.2 311 38.3
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 6.8e-25 119.0 338 36.7
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.5e-24 117.9 316 37.7
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.3e-23 114.8 343 35.6
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.7e-23 114.4 316 37.0
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 1.7e-23 114.4 324 37.7
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 3.7e-23 113.2 333 35.7
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 4.8e-23 112.8 218 45.4
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 8.3e-23 112.1 320 36.2
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 1.0e-20 105.1 308 36.4
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.9e-20 103.6 316 34.8
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 1.5e-19 101.3 308 35.7
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 1.5e-19 101.3 333 37.2
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 1.5e-19 101.3 314 35.4
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 7.2e-19 99.0 318 34.6
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 7.2e-19 99.0 315 36.2
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 9.4e-19 98.6 185 48.6
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 9.4e-19 98.6 306 34.3
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 3.6e-18 96.7 309 36.9
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 6.1e-18 95.9 326 32.5
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 1.4e-17 94.7 200 44.5
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 1.8e-17 94.4 328 35.1
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 2.3e-17 94.0 314 34.1
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 5.2e-17 92.8 321 33.3
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 5.2e-17 92.8 306 34.6
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 6.8e-17 92.4 325 33.5
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 1.2e-16 91.7 307 34.9
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 1.5e-16 91.3 316 32.6
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 2.6e-16 90.5 297 34.3
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 3.4e-16 90.1 304 34.2
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 3.4e-16 90.1 163 44.2
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 9.8e-16 88.6 329 33.7
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 1.3e-15 88.2 145 49.7
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 2.8e-15 87.0 195 41.5
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 3.7e-15 86.7 123 51.2
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 3.7e-15 86.7 184 43.5
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 3.7e-15 86.7 324 33.3
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 3.7e-15 86.7 166 45.2
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 1.1e-14 85.1 317 37.2
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 7.0e-14 82.4 326 31.0
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 9.1e-14 82.0 131 52.7
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 1.6e-13 81.3 211 38.9
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 3.5e-13 80.1 311 34.1
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 3.5e-13 80.1 357 31.7
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 1.0e-12 78.6 321 31.5
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 1.0e-12 78.6 225 39.6
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 1.3e-12 78.2 325 34.8
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 1.7e-12 77.8 348 31.9
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 1.7e-12 77.8 205 41.5
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 2.9e-12 77.0 118 48.3
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 3.8e-12 76.6 315 30.5
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 5.0e-12 76.3 322 31.4
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 5.0e-12 76.3 192 43.2
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 6.6e-12 75.9 100 57.0
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 1.1e-11 75.1 379 30.1
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 1.9e-11 74.3 173 43.9
Nitab4.5_0007045g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 3.3e-11 73.6 270 33.3
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 5.6e-11 72.8 130 46.9
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 7.2e-11 72.4 163 42.3
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 7.2e-11 72.4 108 52.8
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 7.2e-11 72.4 172 40.1
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 9.5e-11 72.0 169 43.8
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 1.2e-10 71.6 305 36.1
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 1.2e-10 71.6 123 48.0
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 1.6e-10 71.2 312 30.8
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 2.1e-10 70.9 305 31.5
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 2.8e-10 70.5 188 38.3
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 2.8e-10 70.5 83 54.2
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 3.6e-10 70.1 99 53.5
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 3.6e-10 70.1 321 31.8
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 4.7e-10 69.7 304 32.9
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 8.0e-10 68.9 139 46.8
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 1.4e-09 68.2 228 34.2
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 1.4e-09 68.2 80 56.2
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 1.8e-09 67.8 177 40.1
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 1.8e-09 67.8 177 40.1
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.8e-09 67.8 311 31.8
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 1.8e-09 67.8 175 38.9
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 2.3e-09 67.4 171 38.0
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 3.0e-09 67.0 167 44.3
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 4.0e-09 66.6 168 41.1
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 5.2e-09 66.2 113 46.9
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 6.8e-09 65.9 59 64.4
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 8.9e-09 65.5 324 29.9
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 8.9e-09 65.5 108 47.2
Glyma.13G135200 Glycine max HOM05D004973 ORTHO05D006119 8.9e-09 65.5 279 33.3
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 8.9e-09 65.5 206 37.4
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 1.2e-08 65.1 59 62.7
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 1.2e-08 65.1 73 54.8
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 1.5e-08 64.7 162 40.7
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 2.0e-08 64.3 60 61.7
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 2.0e-08 64.3 173 41.6
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 3.4e-08 63.5 168 39.3
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 7.5e-08 62.4 201 35.3
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 1.4e-06 58.2 74 48.6
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 1.8e-06 57.8 218 33.0
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 2.4e-06 57.4 81 48.1
CAN.G867.2 Capsicum annuum HOM05D004973 ORTHO05D006119 4.1e-06 56.6 269 30.1
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 5.4e-06 56.2 312 28.2
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 5.4e-06 56.2 318 29.6
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 5.4e-06 56.2 316 29.7


User provided reference genes

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