Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G136500 Carya illinoinensis HOM05D004125 ORTHO05D004933 5.7e-115 417.5 202 100.0
CiPaw.10G136300 Carya illinoinensis HOM05D004125 ORTHO05D004933 1.3e-98 363.2 175 100.0
CiPaw.09G178600 Carya illinoinensis HOM05D004125 ORTHO05D004933 3.3e-70 268.9 176 75.6
Cfa017522 Carpinus fangiana HOM05D004125 ORTHO05D004933 1.2e-67 260.4 175 73.7
Haze_20626 Corylus avellana HOM05D004125 ORTHO05D004933 1.0e-63 247.3 181 68.5
MD12G1121900 Malus domestica HOM05D004125 ORTHO05D004933 3.6e-61 238.8 182 68.1
Prupe.6G240600 Prunus persica HOM05D004125 ORTHO05D004933 1.5e-59 233.4 180 67.2
MD04G1102200 Malus domestica HOM05D004125 ORTHO05D004933 2.6e-59 232.6 171 71.3
Thecc.05G056000 Theobroma cacao HOM05D004125 ORTHO05D004933 1.3e-58 230.3 176 68.8
PGR004G0966 Punica granatum HOM05D004125 ORTHO05D004933 2.9e-58 229.2 174 69.0
Gohir.A04G075700 Gossypium hirsutum HOM05D004125 ORTHO05D004933 3.7e-58 228.8 168 70.2
Manes.09G077179 Manihot esculenta HOM05D004125 ORTHO05D004933 3.7e-58 228.8 168 69.0
CANSAT80G2417 Cannabis sativa HOM05D004125 ORTHO05D004933 4.9e-58 228.4 177 68.9
QL04p031281 Quercus lobata HOM05D004125 ORTHO05D004933 8.3e-58 227.6 178 66.9
QL07p045037 Quercus lobata HOM05D004125 ORTHO05D004933 8.3e-58 227.6 178 66.9
Gorai.009G419400 Gossypium raimondii HOM05D004125 ORTHO05D004933 1.1e-57 227.3 168 69.6
Gohir.D04G114800 Gossypium hirsutum HOM05D004125 ORTHO05D004933 4.1e-57 225.3 168 69.0
TWI53G0971 Tripterygium wilfordii HOM05D004125 ORTHO05D004933 5.4e-57 224.9 171 65.5
Ciclev10012548m.g Citrus clementina HOM05D004125 ORTHO05D004933 9.2e-57 224.2 166 68.7
Manes.08G004600 Manihot esculenta HOM05D004125 ORTHO05D004933 2.7e-56 222.6 164 72.0
Lj2A109G40 Lonicera japonica HOM05D004125 ORTHO05D004933 6.0e-56 221.5 165 69.1
Sabra06G0102300 Salix brachista HOM05D004125 ORTHO05D004933 1.3e-55 220.3 173 65.3
CSS0038970 Camellia sinensis var. sinensis HOM05D004125 ORTHO05D004933 2.3e-55 219.5 114 87.7
Cc06_g03700 Coffea canephora HOM05D004125 ORTHO05D004933 3.9e-55 218.8 169 70.4
COL.COLO4_27059 Corchorus olitorius HOM05D004125 ORTHO05D004933 3.9e-55 218.8 161 69.6
Hma1.2p1_0614F.1_g189600 Hydrangea macrophylla HOM05D004125 ORTHO05D004933 3.9e-55 218.8 166 67.5
Potri.006G130300 Populus trichocarpa HOM05D004125 ORTHO05D004933 1.5e-54 216.9 171 66.1
Aa31LG5G22400 Aethionema arabicum HOM05D004125 ORTHO05D004933 4.3e-54 215.3 166 65.1
Dinv35730 Davidia involucrata HOM05D004125 ORTHO05D004933 5.6e-54 214.9 166 65.1
Atru.chr8.1894 Acer truncatum HOM05D004125 ORTHO05D004933 1.2e-53 213.8 169 65.1
Duzib093G1421 Durio zibethinus HOM05D004125 ORTHO05D004933 1.2e-53 213.8 176 63.1
TWI74G1587 Tripterygium wilfordii HOM05D004125 ORTHO05D004933 1.6e-53 213.4 171 66.7
Rhsim04G0149200 Rhododendron simsii HOM05D004125 ORTHO05D004933 2.1e-53 213.0 166 66.9
Duzib106G0069 Durio zibethinus HOM05D004125 ORTHO05D004933 2.8e-53 212.6 164 67.1
Gorai.002G249400 Gossypium raimondii HOM05D004125 ORTHO05D004933 2.8e-53 212.6 177 63.8
Duzib128G0675 Durio zibethinus HOM05D004125 ORTHO05D004933 3.6e-53 212.2 115 82.6
Gohir.D01G205100 Gossypium hirsutum HOM05D004125 ORTHO05D004933 4.7e-53 211.8 177 63.8
Nn2g10707 Nelumbo nucifera HOM05D004125 ORTHO05D004933 4.7e-53 211.8 166 65.7
Nn2g13030 Nelumbo nucifera HOM05D004125 ORTHO05D004933 6.2e-53 211.5 167 65.9
TAR633G1040 Trochodendron aralioides HOM05D004125 ORTHO05D004933 6.2e-53 211.5 170 64.7
CSS0018032 Camellia sinensis var. sinensis HOM05D004125 ORTHO05D004933 1.1e-52 210.7 112 87.5
Gohir.A01G216300 Gossypium hirsutum HOM05D004125 ORTHO05D004933 1.1e-52 210.7 175 64.0
Sp4g19430 Schrenkiella parvula HOM05D004125 ORTHO05D004933 1.1e-52 210.7 166 66.3
BraA03t11288Z Brassica rapa HOM05D004125 ORTHO05D004933 1.8e-52 209.9 166 65.1
CARHR131620 Cardamine hirsuta HOM05D004125 ORTHO05D004933 1.8e-52 209.9 166 67.5
Thhalv10017172m.g Eutrema salsugineum HOM05D004125 ORTHO05D004933 1.8e-52 209.9 161 65.2
BcaB01g03789 Brassica carinata HOM05D004125 ORTHO05D004933 4.0e-52 208.8 166 64.5
Sabra16G0093400 Salix brachista HOM05D004125 ORTHO05D004933 4.0e-52 208.8 174 63.8
TAR623G1581 Trochodendron aralioides HOM05D004125 ORTHO05D004933 5.2e-52 208.4 166 65.1
A03p20450 Brassica napus HOM05D004125 ORTHO05D004933 8.9e-52 207.6 166 64.5
C03p24050 Brassica napus HOM05D004125 ORTHO05D004933 1.2e-51 207.2 150 68.7
Dinv37266 Davidia involucrata HOM05D004125 ORTHO05D004933 1.2e-51 207.2 166 66.3
BolC4t28068H Brassica oleracea HOM05D004125 ORTHO05D004933 2.0e-51 206.5 166 63.3
HanXRQChr13g0399591 Helianthus annuus HOM05D004125 ORTHO05D004933 2.0e-51 206.5 168 63.7
Carub.0004s1900 Capsella rubella HOM05D004125 ORTHO05D004933 3.4e-51 205.7 165 64.8
Phvul.001G175500 Phaseolus vulgaris HOM05D004125 ORTHO05D004933 4.4e-51 205.3 171 61.4
A04p28380 Brassica napus HOM05D004125 ORTHO05D004933 5.8e-51 204.9 114 79.8
C04p65690 Brassica napus HOM05D004125 ORTHO05D004933 5.8e-51 204.9 114 79.8
VMungo1383G2095 Vigna mungo HOM05D004125 ORTHO05D004933 5.8e-51 204.9 147 67.3
AL4G33460 Arabidopsis lyrata HOM05D004125 ORTHO05D004933 7.6e-51 204.5 165 63.6
AT2G37110 Arabidopsis thaliana HOM05D004125 ORTHO05D004933 1.3e-50 203.8 165 64.8
BcaB06g28978 Brassica carinata HOM05D004125 ORTHO05D004933 1.3e-50 203.8 165 63.6
BcaC02g07548 Brassica carinata HOM05D004125 ORTHO05D004933 1.3e-50 203.8 166 62.7
Potri.016G087200 Populus trichocarpa HOM05D004125 ORTHO05D004933 1.3e-50 203.8 173 62.4
THA.LOC104806497 Tarenaya hassleriana HOM05D004125 ORTHO05D004933 1.7e-50 203.4 175 62.3
Lsat_1_v5_gn_6_30280 Lactuca sativa HOM05D004125 ORTHO05D004933 2.2e-50 203.0 185 58.4
BraA04t18316Z Brassica rapa HOM05D004125 ORTHO05D004933 2.9e-50 202.6 114 78.9
Cfa017523 Carpinus fangiana HOM05D004125 ORTHO05D004933 4.9e-50 201.8 173 64.2
RcHm_v2.0_Chr3g0469051 Rosa chinensis HOM05D004125 ORTHO05D004933 6.4e-50 201.4 174 64.9
Sed0009991 Sechium edule HOM05D004125 ORTHO05D004933 8.3e-50 201.1 167 63.5
Glyma.19G179500 Glycine max HOM05D004125 ORTHO05D004933 1.1e-49 200.7 171 59.6
BcaC01g05633 Brassica carinata HOM05D004125 ORTHO05D004933 1.9e-49 199.9 166 62.7
BolC3t14795H Brassica oleracea HOM05D004125 ORTHO05D004933 1.9e-49 199.9 166 62.7
TAR636G1871 Trochodendron aralioides HOM05D004125 ORTHO05D004933 1.9e-49 199.9 168 64.3
Aqoxy4G03230 Aquilegia oxysepala HOM05D004125 ORTHO05D004933 3.2e-49 199.1 173 59.5
arahy.Tifrunner.gnm1.ann1.DS9KFU Arachis hypogaea HOM05D004125 ORTHO05D004933 7.1e-49 198.0 112 79.5
arahy.Tifrunner.gnm1.ann1.SDZN59 Arachis hypogaea HOM05D004125 ORTHO05D004933 7.1e-49 198.0 112 79.5
MELO3C014254.2 Cucumis melo HOM05D004125 ORTHO05D004933 9.2e-49 197.6 170 62.4
FAN05G0570 Fragaria x ananassa HOM05D004125 ORTHO05D004933 9.2e-49 197.6 180 61.1
PGR142G2082 Punica granatum HOM05D004125 ORTHO05D004933 9.2e-49 197.6 170 64.1
Glyma.03G178800 Glycine max HOM05D004125 ORTHO05D004933 1.2e-48 197.2 131 71.8
Oeu059982.1 Olea europaea HOM05D004125 ORTHO05D004933 1.2e-48 197.2 167 64.1
Ca_08833_v3 Cicer arietinum L. HOM05D004125 ORTHO05D004933 2.1e-48 196.4 114 78.1
FAN02G0333 Fragaria x ananassa HOM05D004125 ORTHO05D004933 2.1e-48 196.4 180 62.2
PSO339G6461 Papaver somniferum HOM05D004125 ORTHO05D004933 2.1e-48 196.4 178 60.7
SEGI_21681 Sequoiadendron giganteum HOM05D004125 ORTHO05D004933 2.7e-48 196.1 120 73.3
Lj3C980T5 Lonicera japonica HOM05D004125 ORTHO05D004933 3.5e-48 195.7 169 60.9
Atru.chr12.53 Acer truncatum HOM05D004125 ORTHO05D004933 4.6e-48 195.3 171 61.4
DCAR_017716 Daucus carota HOM05D004125 ORTHO05D004933 4.6e-48 195.3 167 64.1
THA.LOC104823453 Tarenaya hassleriana HOM05D004125 ORTHO05D004933 4.6e-48 195.3 115 78.3
FvH4_6g15540 Fragaria vesca HOM05D004125 ORTHO05D004933 7.8e-48 194.5 174 63.8
Gohir.A11G324600 Gossypium hirsutum HOM05D004125 ORTHO05D004933 1.3e-47 193.7 176 57.4
Lj1g0007543 Lotus japonicus HOM05D004125 ORTHO05D004933 1.7e-47 193.4 174 57.5
PSO384G3223 Papaver somniferum HOM05D004125 ORTHO05D004933 1.7e-47 193.4 116 77.6
Eucgr.A01169 Eucalyptus grandis HOM05D004125 ORTHO05D004933 2.3e-47 193.0 171 61.4
Sed0002474 Sechium edule HOM05D004125 ORTHO05D004933 2.3e-47 193.0 167 61.1
TPR.G18284 Trifolium pratense HOM05D004125 ORTHO05D004933 2.3e-47 193.0 118 74.6
FAN14G3382 Fragaria x ananassa HOM05D004125 ORTHO05D004933 3.0e-47 192.6 177 62.7
Nitab4.5_0008568g0040 Nicotiana tabacum HOM05D004125 ORTHO05D004933 3.9e-47 192.2 171 58.5
Duzib093G1540 Durio zibethinus HOM05D004125 ORTHO05D004933 5.1e-47 191.8 125 73.6
Nitab4.5_0003871g0020 Nicotiana tabacum HOM05D004125 ORTHO05D004933 5.1e-47 191.8 171 58.5
Sopen09g002360 Solanum pennellii HOM05D004125 ORTHO05D004933 5.1e-47 191.8 167 61.1
RhsimUnG0115400 Rhododendron simsii HOM05D004125 ORTHO05D004933 1.1e-46 190.7 114 77.2
vmacro08723 Vaccinium macrocarpon HOM05D004125 ORTHO05D004933 1.9e-46 189.9 171 60.8
ClCG04G008880 Citrullus lanatus HOM05D004125 ORTHO05D004933 2.5e-46 189.5 167 60.5
FAN09G3242 Fragaria x ananassa HOM05D004125 ORTHO05D004933 2.5e-46 189.5 180 61.1
Sopen10g033700 Solanum pennellii HOM05D004125 ORTHO05D004933 2.5e-46 189.5 170 56.5
PGSC0003DMG400001744 Solanum tuberosum HOM05D004125 ORTHO05D004933 2.5e-46 189.5 167 61.1
Solyc09g007490.3 Solanum lycopersicum HOM05D004125 ORTHO05D004933 5.6e-46 188.3 166 58.4
Solyc10g084260.3 Solanum lycopersicum HOM05D004125 ORTHO05D004933 5.6e-46 188.3 170 56.5
PGSC0003DMG400010481 Solanum tuberosum HOM05D004125 ORTHO05D004933 5.6e-46 188.3 170 55.3
Peaxi162Scf00472g00039 Petunia axillaris HOM05D004125 ORTHO05D004933 7.3e-46 188.0 169 58.6
CsaV3_6G039390 Cucumis sativus L. HOM05D004125 ORTHO05D004933 9.6e-46 187.6 115 73.9
HPP92_012053 Vanilla planifolia HOM05D004125 ORTHO05D004933 1.6e-45 186.8 154 60.4
CDE04G0632 Ceratophyllum demersum HOM05D004125 ORTHO05D004933 2.1e-45 186.4 172 55.8
Medtr7g100870 Medicago truncatula HOM05D004125 ORTHO05D004933 2.8e-45 186.0 171 56.1
Lalb_Chr20g0112841 Lupinus albus HOM05D004125 ORTHO05D004933 3.6e-45 185.7 115 75.7
SalBow3G3732 Salvia bowleyana HOM05D004125 ORTHO05D004933 3.6e-45 185.7 166 60.8
MSTRG.19144 Avicennia marina HOM05D004125 ORTHO05D004933 4.7e-45 185.3 165 62.4
Actinidia13097 Actinidia chinensis HOM05D004125 ORTHO05D004933 8.1e-45 184.5 166 59.6
Migut.J00424 Erythranthe guttata HOM05D004125 ORTHO05D004933 8.1e-45 184.5 167 59.9
PSO063G5409 Papaver somniferum HOM05D004125 ORTHO05D004933 1.1e-44 184.1 112 73.2
Nitab4.5_0000669g0120 Nicotiana tabacum HOM05D004125 ORTHO05D004933 3.1e-44 182.6 166 60.8
CDE07G0936 Ceratophyllum demersum HOM05D004125 ORTHO05D004933 4.0e-44 182.2 172 54.7
ECA233G4685 Erigeron canadensis HOM05D004125 ORTHO05D004933 5.2e-44 181.8 179 53.1
Nitab4.5_0006156g0040 Nicotiana tabacum HOM05D004125 ORTHO05D004933 1.2e-43 180.6 166 60.8
vmacro20050 Vaccinium macrocarpon HOM05D004125 ORTHO05D004933 3.4e-43 179.1 151 60.9
Oeu001336.1 Olea europaea HOM05D004125 ORTHO05D004933 4.4e-43 178.7 169 58.6
Oeu014972.1 Olea europaea HOM05D004125 ORTHO05D004933 9.9e-43 177.6 172 57.0
EL10Ac7g16513 Beta vulgaris HOM05D004125 ORTHO05D004933 1.3e-42 177.2 177 54.8
CAN.G915.16 Capsicum annuum HOM05D004125 ORTHO05D004933 8.4e-42 174.5 118 66.9
MSTRG.5726 Avicennia marina HOM05D004125 ORTHO05D004933 1.4e-41 173.7 166 61.4
Sc07g0006290 Simmondsia chinensis HOM05D004125 ORTHO05D004933 7.1e-41 171.4 169 55.0
CAN.G1091.11 Capsicum annuum HOM05D004125 ORTHO05D004933 9.3e-41 171.0 166 55.4
SGA_v2.0_scaffold126G33910 Striga asiatica HOM05D004125 ORTHO05D004933 9.3e-41 171.0 168 58.3
Ah.15g092190 Amaranthus hybridus HOM05D004125 ORTHO05D004933 1.2e-40 170.6 165 57.0
Peaxi162Scf00005g03811 Petunia axillaris HOM05D004125 ORTHO05D004933 1.6e-40 170.2 167 58.7
Migut.L01669 Erythranthe guttata HOM05D004125 ORTHO05D004933 3.5e-40 169.1 159 54.7
Hma1.2p1_0111F.1_g054010 Hydrangea macrophylla HOM05D004125 ORTHO05D004933 1.0e-39 167.5 168 60.7
SGA_v2.0_scaffold94G28676 Striga asiatica HOM05D004125 ORTHO05D004933 1.7e-39 166.8 139 59.7
Gorai.007G374200 Gossypium raimondii HOM05D004125 ORTHO05D004933 1.1e-38 164.1 98 74.5
Os01g0157900 Oryza sativa ssp. japonica HOM05D004125 ORTHO05D004933 1.1e-38 164.1 115 64.3
Zm00001eb123690 Zea mays HOM05D004125 ORTHO05D004933 1.1e-38 164.1 174 52.3
Psat0s1011g0040 Pisum sativum HOM05D004125 ORTHO05D004933 1.3e-37 160.6 100 75.0
unitig_0.g689 Utricularia gibba HOM05D004125 ORTHO05D004933 8.1e-37 157.9 126 57.1
AUR62040494 Chenopodium quinoa HOM05D004125 ORTHO05D004933 1.1e-36 157.5 107 68.2
Actinidia05264 Actinidia chinensis HOM05D004125 ORTHO05D004933 9.9e-35 151.0 90 78.9
SalBow5G1492 Salvia bowleyana HOM05D004125 ORTHO05D004933 1.9e-33 146.7 116 62.1
SalBow5G2572 Salvia bowleyana HOM05D004125 ORTHO05D004933 1.9e-33 146.7 116 62.1
SalBow5G0726 Salvia bowleyana HOM05D004125 ORTHO05D004933 4.2e-33 145.6 115 61.7
DCAR_014971 Daucus carota HOM05D004125 ORTHO05D004933 9.3e-33 144.4 180 48.9
Gohir.D11G343850 Gossypium hirsutum HOM05D004125 ORTHO05D004933 8.7e-31 137.9 78 76.9
AagrBONN_evm.TU.Sc2ySwM_369.209 Anthoceros agrestis HOM05D004125 ORTHO05D004933 3.1e-28 129.4 164 45.1
Pp3c2_28280 Physcomitrium patens HOM05D004125 ORTHO05D004933 2.2e-26 123.2 114 53.5
Mapoly0052s0073 Marchantia polymorpha HOM05D004125 ORTHO05D004933 2.1e-24 116.7 166 41.6
PSO339G6532 Papaver somniferum HOM05D004125 ORTHO05D004933 1.0e-23 114.4 74 70.3
Pp3c19_5790 Physcomitrium patens HOM05D004125 ORTHO05D004933 1.9e-22 110.2 111 51.4
Pp3c21_3760 Physcomitrium patens HOM05D004125 ORTHO05D004933 5.8e-19 98.6 109 47.7
QL07p045063 Quercus lobata HOM05D004125 ORTHO05D004933 7.6e-19 98.2 122 49.2
MBI15_g00075_MAGBIO Magnolia biondii HOM05D004125 ORTHO05D004933 1.7e-18 97.1 128 46.1
ATR0594G238 Amborella trichopoda HOM05D004125 ORTHO05D004933 8.7e-15 84.7 96 49.0
Lj2A109G39 Lonicera japonica HOM05D004125 ORTHO05D004933 6.9e-12 75.1 38 89.5
Glyma.01G230400 Glycine max HOM05D000414 ORTHO05D000276 7.4e-06 55.1 117 31.6


User provided reference genes

Program Settings