Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G136300 Carya illinoinensis HOM05D004125 ORTHO05D004933 1.1e-110 403.3 198 100.0
CiPaw.10G136500 Carya illinoinensis HOM05D004125 ORTHO05D004933 2.1e-98 362.5 175 100.0
CiPaw.09G178600 Carya illinoinensis HOM05D004125 ORTHO05D004933 1.1e-70 270.4 179 74.9
Cfa017522 Carpinus fangiana HOM05D004125 ORTHO05D004933 3.9e-68 261.9 178 73.0
Haze_20626 Corylus avellana HOM05D004125 ORTHO05D004933 6.5e-63 244.6 182 68.1
MD12G1121900 Malus domestica HOM05D004125 ORTHO05D004933 1.2e-61 240.4 185 67.6
Prupe.6G240600 Prunus persica HOM05D004125 ORTHO05D004933 3.9e-60 235.3 183 66.7
MD04G1102200 Malus domestica HOM05D004125 ORTHO05D004933 6.7e-60 234.6 174 70.7
Thecc.05G056000 Theobroma cacao HOM05D004125 ORTHO05D004933 4.3e-59 231.9 179 68.2
PGR004G0966 Punica granatum HOM05D004125 ORTHO05D004933 9.6e-59 230.7 177 68.4
CANSAT80G2417 Cannabis sativa HOM05D004125 ORTHO05D004933 1.3e-58 230.3 180 68.3
Gohir.A04G075700 Gossypium hirsutum HOM05D004125 ORTHO05D004933 1.3e-58 230.3 171 69.6
Manes.09G077179 Manihot esculenta HOM05D004125 ORTHO05D004933 1.3e-58 230.3 171 68.4
QL04p031281 Quercus lobata HOM05D004125 ORTHO05D004933 2.8e-58 229.2 181 66.3
QL07p045037 Quercus lobata HOM05D004125 ORTHO05D004933 2.8e-58 229.2 181 66.3
Gorai.009G419400 Gossypium raimondii HOM05D004125 ORTHO05D004933 3.7e-58 228.8 171 69.0
Gohir.D04G114800 Gossypium hirsutum HOM05D004125 ORTHO05D004933 1.4e-57 226.9 171 68.4
TWI53G0971 Tripterygium wilfordii HOM05D004125 ORTHO05D004933 1.8e-57 226.5 174 64.9
Lj2A109G40 Lonicera japonica HOM05D004125 ORTHO05D004933 6.9e-57 224.6 172 67.4
Manes.08G004600 Manihot esculenta HOM05D004125 ORTHO05D004933 6.9e-57 224.6 167 71.3
Ciclev10012548m.g Citrus clementina HOM05D004125 ORTHO05D004933 1.5e-56 223.4 166 68.7
CSS0038970 Camellia sinensis var. sinensis HOM05D004125 ORTHO05D004933 7.6e-56 221.1 117 86.3
Cc06_g03700 Coffea canephora HOM05D004125 ORTHO05D004933 1.3e-55 220.3 172 69.8
Hma1.2p1_0614F.1_g189600 Hydrangea macrophylla HOM05D004125 ORTHO05D004933 1.3e-55 220.3 169 66.9
Sabra06G0102300 Salix brachista HOM05D004125 ORTHO05D004933 2.2e-55 219.5 174 64.9
Potri.006G130300 Populus trichocarpa HOM05D004125 ORTHO05D004933 5.0e-55 218.4 174 65.5
COL.COLO4_27059 Corchorus olitorius HOM05D004125 ORTHO05D004933 6.5e-55 218.0 161 69.6
Duzib093G1421 Durio zibethinus HOM05D004125 ORTHO05D004933 3.2e-54 215.7 179 62.6
Atru.chr8.1894 Acer truncatum HOM05D004125 ORTHO05D004933 4.2e-54 215.3 172 64.5
TWI74G1587 Tripterygium wilfordii HOM05D004125 ORTHO05D004933 4.2e-54 215.3 174 66.1
Rhsim04G0149200 Rhododendron simsii HOM05D004125 ORTHO05D004933 5.5e-54 214.9 174 64.9
Aa31LG5G22400 Aethionema arabicum HOM05D004125 ORTHO05D004933 9.3e-54 214.2 166 65.1
Dinv35730 Davidia involucrata HOM05D004125 ORTHO05D004933 9.3e-54 214.2 167 64.7
Duzib106G0069 Durio zibethinus HOM05D004125 ORTHO05D004933 9.3e-54 214.2 167 66.5
Gorai.002G249400 Gossypium raimondii HOM05D004125 ORTHO05D004933 9.3e-54 214.2 180 63.3
Duzib128G0675 Durio zibethinus HOM05D004125 ORTHO05D004933 1.2e-53 213.8 118 81.4
Gohir.D01G205100 Gossypium hirsutum HOM05D004125 ORTHO05D004933 1.6e-53 213.4 180 63.3
Nn2g10707 Nelumbo nucifera HOM05D004125 ORTHO05D004933 1.6e-53 213.4 169 65.1
Nn2g13030 Nelumbo nucifera HOM05D004125 ORTHO05D004933 2.1e-53 213.0 170 65.3
TAR633G1040 Trochodendron aralioides HOM05D004125 ORTHO05D004933 2.1e-53 213.0 173 64.2
CSS0018032 Camellia sinensis var. sinensis HOM05D004125 ORTHO05D004933 3.5e-53 212.2 115 86.1
Gohir.A01G216300 Gossypium hirsutum HOM05D004125 ORTHO05D004933 3.5e-53 212.2 178 63.5
Sp4g19430 Schrenkiella parvula HOM05D004125 ORTHO05D004933 2.3e-52 209.5 166 66.3
BraA03t11288Z Brassica rapa HOM05D004125 ORTHO05D004933 3.9e-52 208.8 166 65.1
CARHR131620 Cardamine hirsuta HOM05D004125 ORTHO05D004933 3.9e-52 208.8 166 67.5
Thhalv10017172m.g Eutrema salsugineum HOM05D004125 ORTHO05D004933 3.9e-52 208.8 161 65.2
Dinv37266 Davidia involucrata HOM05D004125 ORTHO05D004933 6.7e-52 208.0 180 63.3
BcaB01g03789 Brassica carinata HOM05D004125 ORTHO05D004933 8.7e-52 207.6 166 64.5
Sabra16G0093400 Salix brachista HOM05D004125 ORTHO05D004933 8.7e-52 207.6 175 63.4
TAR623G1581 Trochodendron aralioides HOM05D004125 ORTHO05D004933 1.1e-51 207.2 166 65.1
Phvul.001G175500 Phaseolus vulgaris HOM05D004125 ORTHO05D004933 1.5e-51 206.8 174 60.9
A03p20450 Brassica napus HOM05D004125 ORTHO05D004933 1.9e-51 206.5 166 64.5
C03p24050 Brassica napus HOM05D004125 ORTHO05D004933 1.9e-51 206.5 150 68.7
VMungo1383G2095 Vigna mungo HOM05D004125 ORTHO05D004933 1.9e-51 206.5 150 66.7
BolC4t28068H Brassica oleracea HOM05D004125 ORTHO05D004933 4.3e-51 205.3 166 63.3
HanXRQChr13g0399591 Helianthus annuus HOM05D004125 ORTHO05D004933 4.3e-51 205.3 168 63.7
Potri.016G087200 Populus trichocarpa HOM05D004125 ORTHO05D004933 4.3e-51 205.3 176 61.9
Carub.0004s1900 Capsella rubella HOM05D004125 ORTHO05D004933 7.4e-51 204.5 165 64.8
A04p28380 Brassica napus HOM05D004125 ORTHO05D004933 9.7e-51 204.1 114 79.8
C04p65690 Brassica napus HOM05D004125 ORTHO05D004933 9.7e-51 204.1 114 79.8
AL4G33460 Arabidopsis lyrata HOM05D004125 ORTHO05D004933 1.6e-50 203.4 165 63.6
RcHm_v2.0_Chr3g0469051 Rosa chinensis HOM05D004125 ORTHO05D004933 2.2e-50 203.0 177 64.4
Sed0009991 Sechium edule HOM05D004125 ORTHO05D004933 2.2e-50 203.0 170 62.9
AT2G37110 Arabidopsis thaliana HOM05D004125 ORTHO05D004933 2.8e-50 202.6 165 64.8
BcaB06g28978 Brassica carinata HOM05D004125 ORTHO05D004933 2.8e-50 202.6 165 63.6
BcaC02g07548 Brassica carinata HOM05D004125 ORTHO05D004933 2.8e-50 202.6 166 62.7
THA.LOC104806497 Tarenaya hassleriana HOM05D004125 ORTHO05D004933 2.8e-50 202.6 175 62.3
Glyma.19G179500 Glycine max HOM05D004125 ORTHO05D004933 3.7e-50 202.2 174 59.2
Lsat_1_v5_gn_6_30280 Lactuca sativa HOM05D004125 ORTHO05D004933 3.7e-50 202.2 186 58.1
BraA04t18316Z Brassica rapa HOM05D004125 ORTHO05D004933 4.8e-50 201.8 114 78.9
TAR636G1871 Trochodendron aralioides HOM05D004125 ORTHO05D004933 4.8e-50 201.8 171 63.7
Cfa017523 Carpinus fangiana HOM05D004125 ORTHO05D004933 8.2e-50 201.1 173 64.2
MELO3C014254.2 Cucumis melo HOM05D004125 ORTHO05D004933 2.4e-49 199.5 173 61.8
BcaC01g05633 Brassica carinata HOM05D004125 ORTHO05D004933 3.1e-49 199.1 166 62.7
BolC3t14795H Brassica oleracea HOM05D004125 ORTHO05D004933 3.1e-49 199.1 166 62.7
FAN02G0333 Fragaria x ananassa HOM05D004125 ORTHO05D004933 4.1e-49 198.7 177 63.3
Glyma.03G178800 Glycine max HOM05D004125 ORTHO05D004933 4.1e-49 198.7 134 70.9
Oeu059982.1 Olea europaea HOM05D004125 ORTHO05D004933 4.1e-49 198.7 170 63.5
Aqoxy4G03230 Aquilegia oxysepala HOM05D004125 ORTHO05D004933 6.9e-49 198.0 173 59.5
Ca_08833_v3 Cicer arietinum L. HOM05D004125 ORTHO05D004933 6.9e-49 198.0 117 76.9
PSO339G6461 Papaver somniferum HOM05D004125 ORTHO05D004933 6.9e-49 198.0 181 60.2
SEGI_21681 Sequoiadendron giganteum HOM05D004125 ORTHO05D004933 6.9e-49 198.0 123 72.4
arahy.Tifrunner.gnm1.ann1.DS9KFU Arachis hypogaea HOM05D004125 ORTHO05D004933 1.2e-48 197.2 113 78.8
arahy.Tifrunner.gnm1.ann1.SDZN59 Arachis hypogaea HOM05D004125 ORTHO05D004933 1.2e-48 197.2 113 78.8
Atru.chr12.53 Acer truncatum HOM05D004125 ORTHO05D004933 1.5e-48 196.8 174 60.9
DCAR_017716 Daucus carota HOM05D004125 ORTHO05D004933 1.5e-48 196.8 170 63.5
PGR142G2082 Punica granatum HOM05D004125 ORTHO05D004933 2.0e-48 196.4 170 64.1
FvH4_6g15540 Fragaria vesca HOM05D004125 ORTHO05D004933 2.6e-48 196.1 177 63.3
FAN05G0570 Fragaria x ananassa HOM05D004125 ORTHO05D004933 3.4e-48 195.7 174 62.6
FAN14G3382 Fragaria x ananassa HOM05D004125 ORTHO05D004933 4.5e-48 195.3 177 62.7
Eucgr.A01169 Eucalyptus grandis HOM05D004125 ORTHO05D004933 5.9e-48 194.9 174 60.9
Lj1g0007543 Lotus japonicus HOM05D004125 ORTHO05D004933 5.9e-48 194.9 177 57.1
PSO384G3223 Papaver somniferum HOM05D004125 ORTHO05D004933 5.9e-48 194.9 119 76.5
Lj3C980T5 Lonicera japonica HOM05D004125 ORTHO05D004933 7.7e-48 194.5 170 60.6
Sed0002474 Sechium edule HOM05D004125 ORTHO05D004933 7.7e-48 194.5 170 60.6
TPR.G18284 Trifolium pratense HOM05D004125 ORTHO05D004933 7.7e-48 194.5 121 73.6
Gohir.A11G324600 Gossypium hirsutum HOM05D004125 ORTHO05D004933 1.0e-47 194.1 178 57.3
Nitab4.5_0008568g0040 Nicotiana tabacum HOM05D004125 ORTHO05D004933 1.0e-47 194.1 174 58.0
THA.LOC104823453 Tarenaya hassleriana HOM05D004125 ORTHO05D004933 1.0e-47 194.1 115 78.3
Duzib093G1540 Durio zibethinus HOM05D004125 ORTHO05D004933 1.3e-47 193.7 128 72.7
Nitab4.5_0003871g0020 Nicotiana tabacum HOM05D004125 ORTHO05D004933 1.3e-47 193.7 174 58.0
Sopen09g002360 Solanum pennellii HOM05D004125 ORTHO05D004933 1.7e-47 193.4 170 60.6
FAN09G3242 Fragaria x ananassa HOM05D004125 ORTHO05D004933 5.0e-47 191.8 177 62.1
Sopen10g033700 Solanum pennellii HOM05D004125 ORTHO05D004933 6.5e-47 191.4 173 56.1
PGSC0003DMG400001744 Solanum tuberosum HOM05D004125 ORTHO05D004933 8.5e-47 191.0 170 60.6
Peaxi162Scf00472g00039 Petunia axillaris HOM05D004125 ORTHO05D004933 1.4e-46 190.3 172 58.1
Solyc09g007490.3 Solanum lycopersicum HOM05D004125 ORTHO05D004933 1.4e-46 190.3 169 58.0
Solyc10g084260.3 Solanum lycopersicum HOM05D004125 ORTHO05D004933 1.4e-46 190.3 173 56.1
PGSC0003DMG400010481 Solanum tuberosum HOM05D004125 ORTHO05D004933 1.4e-46 190.3 173 54.9
RhsimUnG0115400 Rhododendron simsii HOM05D004125 ORTHO05D004933 1.9e-46 189.9 115 76.5
CsaV3_6G039390 Cucumis sativus L. HOM05D004125 ORTHO05D004933 2.5e-46 189.5 118 72.9
ClCG04G008880 Citrullus lanatus HOM05D004125 ORTHO05D004933 4.2e-46 188.7 167 60.5
CDE04G0632 Ceratophyllum demersum HOM05D004125 ORTHO05D004933 5.5e-46 188.3 175 55.4
vmacro08723 Vaccinium macrocarpon HOM05D004125 ORTHO05D004933 7.2e-46 188.0 167 61.7
Lalb_Chr20g0112841 Lupinus albus HOM05D004125 ORTHO05D004933 9.4e-46 187.6 118 74.6
Medtr7g100870 Medicago truncatula HOM05D004125 ORTHO05D004933 9.4e-46 187.6 174 55.7
MSTRG.19144 Avicennia marina HOM05D004125 ORTHO05D004933 1.2e-45 187.2 168 61.9
Actinidia13097 Actinidia chinensis HOM05D004125 ORTHO05D004933 2.7e-45 186.0 169 59.2
Migut.J00424 Erythranthe guttata HOM05D004125 ORTHO05D004933 2.7e-45 186.0 170 59.4
HPP92_012053 Vanilla planifolia HOM05D004125 ORTHO05D004933 3.6e-45 185.7 154 60.4
SalBow3G3732 Salvia bowleyana HOM05D004125 ORTHO05D004933 7.9e-45 184.5 166 60.8
CDE07G0936 Ceratophyllum demersum HOM05D004125 ORTHO05D004933 1.0e-44 184.1 175 54.3
Nitab4.5_0000669g0120 Nicotiana tabacum HOM05D004125 ORTHO05D004933 1.0e-44 184.1 169 60.4
PSO063G5409 Papaver somniferum HOM05D004125 ORTHO05D004933 2.3e-44 183.0 112 73.2
Nitab4.5_0006156g0040 Nicotiana tabacum HOM05D004125 ORTHO05D004933 3.9e-44 182.2 169 60.4
ECA233G4685 Erigeron canadensis HOM05D004125 ORTHO05D004933 1.1e-43 180.6 179 53.1
Oeu001336.1 Olea europaea HOM05D004125 ORTHO05D004933 1.1e-43 180.6 172 58.1
EL10Ac7g16513 Beta vulgaris HOM05D004125 ORTHO05D004933 3.3e-43 179.1 180 54.4
vmacro20050 Vaccinium macrocarpon HOM05D004125 ORTHO05D004933 3.3e-43 179.1 151 60.9
Oeu014972.1 Olea europaea HOM05D004125 ORTHO05D004933 5.7e-43 178.3 170 57.1
CAN.G915.16 Capsicum annuum HOM05D004125 ORTHO05D004933 1.7e-42 176.8 121 66.1
MSTRG.5726 Avicennia marina HOM05D004125 ORTHO05D004933 4.8e-42 175.3 169 60.9
CAN.G1091.11 Capsicum annuum HOM05D004125 ORTHO05D004933 2.4e-41 172.9 169 55.0
Sc07g0006290 Simmondsia chinensis HOM05D004125 ORTHO05D004933 2.4e-41 172.9 172 54.7
SGA_v2.0_scaffold126G33910 Striga asiatica HOM05D004125 ORTHO05D004933 3.1e-41 172.6 171 57.9
Peaxi162Scf00005g03811 Petunia axillaris HOM05D004125 ORTHO05D004933 5.3e-41 171.8 170 58.2
Migut.L01669 Erythranthe guttata HOM05D004125 ORTHO05D004933 9.1e-41 171.0 146 58.9
Ah.15g092190 Amaranthus hybridus HOM05D004125 ORTHO05D004933 2.0e-40 169.9 165 57.0
Hma1.2p1_0111F.1_g054010 Hydrangea macrophylla HOM05D004125 ORTHO05D004933 1.7e-39 166.8 167 61.1
SGA_v2.0_scaffold94G28676 Striga asiatica HOM05D004125 ORTHO05D004933 3.8e-39 165.6 139 59.7
Gorai.007G374200 Gossypium raimondii HOM05D004125 ORTHO05D004933 1.1e-38 164.1 98 74.5
Os01g0157900 Oryza sativa ssp. japonica HOM05D004125 ORTHO05D004933 1.9e-38 163.3 115 64.3
Zm00001eb123690 Zea mays HOM05D004125 ORTHO05D004933 1.9e-38 163.3 174 52.3
Psat0s1011g0040 Pisum sativum HOM05D004125 ORTHO05D004933 4.2e-38 162.2 103 73.8
unitig_0.g689 Utricularia gibba HOM05D004125 ORTHO05D004933 2.7e-37 159.5 129 56.6
AUR62040494 Chenopodium quinoa HOM05D004125 ORTHO05D004933 1.4e-36 157.1 107 68.2
Actinidia05264 Actinidia chinensis HOM05D004125 ORTHO05D004933 3.3e-35 152.5 93 77.4
SalBow5G0726 Salvia bowleyana HOM05D004125 ORTHO05D004933 1.4e-33 147.1 118 61.0
SalBow5G1492 Salvia bowleyana HOM05D004125 ORTHO05D004933 4.1e-33 145.6 115 62.6
SalBow5G2572 Salvia bowleyana HOM05D004125 ORTHO05D004933 4.1e-33 145.6 115 62.6
DCAR_014971 Daucus carota HOM05D004125 ORTHO05D004933 3.5e-32 142.5 171 50.9
Gohir.D11G343850 Gossypium hirsutum HOM05D004125 ORTHO05D004933 8.5e-31 137.9 78 76.9
AagrBONN_evm.TU.Sc2ySwM_369.209 Anthoceros agrestis HOM05D004125 ORTHO05D004933 6.7e-28 128.3 160 46.2
Pp3c2_28280 Physcomitrium patens HOM05D004125 ORTHO05D004933 4.8e-26 122.1 114 53.5
Mapoly0052s0073 Marchantia polymorpha HOM05D004125 ORTHO05D004933 4.5e-24 115.5 166 41.6
PSO339G6532 Papaver somniferum HOM05D004125 ORTHO05D004933 1.7e-23 113.6 74 70.3
Pp3c19_5790 Physcomitrium patens HOM05D004125 ORTHO05D004933 4.2e-22 109.0 111 51.4
Pp3c21_3760 Physcomitrium patens HOM05D004125 ORTHO05D004933 5.7e-19 98.6 111 47.7
QL07p045063 Quercus lobata HOM05D004125 ORTHO05D004933 7.5e-19 98.2 122 49.2
MBI15_g00075_MAGBIO Magnolia biondii HOM05D004125 ORTHO05D004933 1.7e-18 97.1 128 46.1
ATR0594G238 Amborella trichopoda HOM05D004125 ORTHO05D004933 8.5e-15 84.7 96 49.0
Lj2A109G39 Lonicera japonica HOM05D004125 ORTHO05D004933 6.8e-12 75.1 38 89.5


User provided reference genes

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