Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 9.3e-262 906.4 468 100.0
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 3.5e-208 728.4 472 80.5
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 1.7e-207 726.1 476 80.5
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 7.5e-187 657.5 484 72.3
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 5.6e-182 641.3 468 70.3
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 3.1e-172 609.0 484 65.3
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 5.3e-172 608.2 476 67.4
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 9.0e-172 607.4 472 67.2
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 1.5e-171 606.7 466 66.7
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 3.4e-171 605.5 476 67.2
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 9.3e-169 597.4 468 67.1
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.7e-167 593.2 483 65.4
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 2.5e-166 589.3 479 64.1
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 3.3e-166 589.0 482 65.6
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 4.3e-166 588.6 464 65.1
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 2.4e-164 582.8 462 65.6
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 3.1e-164 582.4 453 66.9
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 6.4e-162 574.7 465 65.2
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 4.2e-161 572.0 473 64.9
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 4.2e-161 572.0 480 65.4
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 9.3e-161 570.9 463 63.9
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 1.6e-160 570.1 461 64.6
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 3.0e-159 565.8 468 63.0
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 3.0e-159 565.8 478 63.0
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 8.7e-159 564.3 478 62.8
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 5.6e-158 561.6 465 63.2
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 9.6e-158 560.8 468 64.3
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 1.6e-157 560.1 470 63.6
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 6.2e-157 558.1 463 63.7
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 1.8e-156 556.6 464 63.6
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 1.2e-155 553.9 485 58.4
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 4.5e-155 552.0 475 62.1
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 1.0e-154 550.8 470 62.8
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 1.3e-154 550.4 461 61.2
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 1.7e-154 550.1 475 62.7
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.7e-154 550.1 470 62.6
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.1e-153 547.4 470 62.1
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.2e-153 545.8 470 61.9
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 4.6e-152 542.0 464 61.2
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 7.9e-152 541.2 475 57.9
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 3.9e-151 538.9 495 56.2
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 8.7e-151 537.7 470 59.8
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 1.5e-150 537.0 470 61.5
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 2.5e-150 536.2 470 60.9
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 1.3e-149 533.9 468 61.1
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 1.2e-147 527.3 467 59.5
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 4.5e-147 525.4 472 58.5
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 7.6e-147 524.6 465 58.7
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 7.6e-147 524.6 458 61.8
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.0e-146 524.2 467 58.5
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.0e-146 524.2 455 61.8
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 1.0e-146 524.2 490 55.3
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.3e-146 523.9 462 59.5
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 2.2e-146 523.1 474 60.8
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 2.9e-146 522.7 460 62.4
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 4.9e-146 521.9 470 58.9
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 1.1e-145 520.8 472 58.7
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 1.9e-145 520.0 476 58.4
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 4.2e-145 518.8 474 58.9
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.5e-145 518.5 469 59.9
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.5e-145 518.5 462 58.9
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 7.1e-145 518.1 467 57.8
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.2e-144 517.3 468 59.0
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 6.1e-144 515.0 471 60.3
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.0e-143 514.2 460 58.7
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 8.7e-143 511.1 461 57.5
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 9.7e-142 507.7 458 59.2
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 9.7e-142 507.7 466 59.2
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 6.1e-136 488.4 458 55.7
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 7.9e-136 488.0 471 55.6
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 1.4e-135 487.3 466 54.9
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 1.8e-135 486.9 465 55.3
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 2.3e-135 486.5 471 55.4
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 1.1e-134 484.2 471 55.2
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 1.1e-134 484.2 482 56.0
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 2.0e-134 483.4 468 55.6
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 1.4e-132 477.2 611 46.8
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 2.4e-132 476.5 472 55.7
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 5.3e-132 475.3 458 54.6
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 5.3e-132 475.3 446 56.5
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 2.6e-131 473.0 449 55.5
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 5.9e-131 471.9 449 55.5
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 4.7e-128 462.2 457 52.1
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 3.0e-127 459.5 467 53.7
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 6.7e-127 458.4 521 51.2
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 2.6e-126 456.4 436 53.4
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 3.3e-126 456.1 416 59.9
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 4.4e-126 455.7 453 55.6
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 3.1e-124 449.5 464 54.7
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 1.0e-122 444.5 468 53.4
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 2.2e-122 443.4 473 52.2
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 2.9e-122 443.0 462 51.1
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 1.9e-121 440.3 422 53.6
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 7.2e-121 438.3 461 51.2
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 1.6e-120 437.2 459 49.5
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 6.7e-119 431.8 473 52.6
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 2.6e-118 429.9 459 50.1
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 3.3e-118 429.5 465 51.4
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 3.3e-118 429.5 459 50.1
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 4.4e-118 429.1 338 65.1
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 1.4e-116 424.1 467 52.9
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 2.0e-115 420.2 587 45.0
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 5.0e-114 415.6 448 51.3
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 1.0e-111 407.9 293 68.9
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 2.3e-111 406.8 267 74.5
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 9.8e-110 401.4 302 66.9
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 1.0e-106 391.3 460 50.2
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.7e-106 390.6 300 66.7
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.7e-106 390.6 300 66.7
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.9e-106 389.8 440 46.8
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 9.8e-102 374.8 464 48.3
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 3.7e-101 372.9 369 52.6
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 1.8e-100 370.5 469 44.6
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.3e-98 364.4 354 57.9
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 1.1e-97 361.3 462 43.9
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 1.9e-97 360.5 263 68.8
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 9.5e-97 358.2 449 50.8
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 6.1e-96 355.5 454 43.8
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 7.5e-94 348.6 467 44.5
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 1.1e-92 344.7 457 43.8
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 1.3e-85 321.2 265 61.9
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 7.0e-84 315.5 438 41.1
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 5.2e-71 272.7 457 36.8
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 5.6e-65 252.7 436 36.7
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 4.2e-60 236.5 422 35.8
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 8.4e-53 212.2 450 34.9
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 3.0e-50 203.8 453 32.7
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 3.9e-50 203.4 324 41.7
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 5.1e-50 203.0 341 39.6
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 2.1e-48 197.6 466 32.2
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 2.0e-46 191.0 257 41.6
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 5.5e-44 183.0 234 46.2
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 3.5e-43 180.3 148 64.9
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 5.1e-42 176.4 216 42.6
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 8.7e-42 175.6 136 61.0
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 9.0e-39 165.6 227 43.6
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 5.8e-38 162.9 227 43.6
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 4.2e-36 156.8 165 52.7
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 7.1e-36 156.0 340 32.1
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.8e-32 143.3 106 64.2
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 7.9e-27 125.9 171 48.5
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 3.9e-26 123.6 248 32.3
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 5.1e-26 123.2 192 34.9
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 8.7e-26 122.5 99 57.6
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 1.6e-24 118.2 231 40.3
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 3.7e-24 117.1 452 26.5
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.4e-23 115.2 171 45.6
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.4e-23 114.4 144 51.4
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 1.9e-20 104.8 140 45.0
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 4.2e-20 103.6 124 45.2
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 4.2e-20 103.6 124 45.2
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 1.6e-19 101.7 463 26.1
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 2.7e-19 100.9 294 27.6
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 5.1e-18 96.7 120 44.2
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 8.8e-18 95.9 92 50.0
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 4.1e-15 87.0 245 30.2
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.8e-13 80.5 72 62.5
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 8.5e-13 79.3 72 62.5
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.9e-12 78.2 86 57.0
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.2e-11 75.5 69 60.9
Psat2g063600 Pisum sativum HOM05D004355 ORTHO05D005228 3.9e-10 70.5 84 42.9
Haze_04707 Corylus avellana HOM05D006763 ORTHO05D008659 1.5e-09 68.6 131 42.7
Sabra12G0033900 Salix brachista HOM05D000239 ORTHO05D000484 7.7e-06 56.2 173 28.9


User provided reference genes

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