Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G132400 Carya illinoinensis HOM05D001006 ORTHO05D000868 3.4e-39 164.5 79 100.0
Atru.chr1.915 Acer truncatum HOM05D001006 ORTHO05D000868 1.9e-13 79.0 45 80.0
Ciclev10005243m.g Citrus clementina HOM05D001006 ORTHO05D000868 2.4e-13 78.6 45 80.0
CiPaw.08G041500 Carya illinoinensis HOM05D001006 ORTHO05D000868 4.2e-13 77.8 45 80.0
Hma1.2p1_1580F.1_g291920 Hydrangea macrophylla HOM05D001006 ORTHO05D000868 6.0e-12 73.9 79 49.4
Manes.14G038700 Manihot esculenta HOM05D001006 ORTHO05D000868 7.9e-12 73.6 77 48.1
Actinidia13609 Actinidia chinensis HOM05D001006 ORTHO05D000868 1.0e-11 73.2 48 68.8
CSS0030582 Camellia sinensis var. sinensis HOM05D001006 ORTHO05D000868 1.3e-11 72.8 78 44.9
COL.COLO4_37341 Corchorus olitorius HOM05D001006 ORTHO05D000868 1.3e-11 72.8 45 73.3
Dinv16865 Davidia involucrata HOM05D001006 ORTHO05D000868 1.3e-11 72.8 45 71.1
Duzib205G1749 Durio zibethinus HOM05D001006 ORTHO05D000868 1.8e-11 72.4 45 73.3
QL09p027977 Quercus lobata HOM05D001006 ORTHO05D000868 1.8e-11 72.4 45 73.3
Thecc.03G148900 Theobroma cacao HOM05D001006 ORTHO05D000868 1.8e-11 72.4 45 73.3
Duzib084G1087 Durio zibethinus HOM05D001006 ORTHO05D000868 3.9e-11 71.2 45 71.1
Haze_22196 Corylus avellana HOM05D001006 ORTHO05D000868 5.1e-11 70.9 48 70.8
MD01G1177400 Malus domestica HOM05D001006 ORTHO05D000868 6.7e-11 70.5 45 71.1
Gohir.D03G106100 Gossypium hirsutum HOM05D001006 ORTHO05D000868 8.7e-11 70.1 45 71.1
TWI14G0311 Tripterygium wilfordii HOM05D001006 ORTHO05D000868 8.7e-11 70.1 45 68.9
CiPaw.07G185200 Carya illinoinensis HOM05D001006 ORTHO05D000868 1.1e-10 69.7 45 71.1
Potri.003G151300 Populus trichocarpa HOM05D001006 ORTHO05D000868 1.9e-10 68.9 45 71.1
RcHm_v2.0_Chr1g0373671 Rosa chinensis HOM05D001006 ORTHO05D000868 1.9e-10 68.9 46 73.9
ClCG07G016970 Citrullus lanatus HOM05D000640 ORTHO05D000868 2.5e-10 68.6 45 68.9
Eucgr.K00129 Eucalyptus grandis HOM05D001006 ORTHO05D000868 2.5e-10 68.6 45 71.1
Gohir.D12G199000 Gossypium hirsutum HOM05D001006 ORTHO05D000868 2.5e-10 68.6 45 68.9
Gorai.008G214100 Gossypium raimondii HOM05D001006 ORTHO05D000868 2.5e-10 68.6 45 68.9
MELO3C017647.2 Cucumis melo HOM05D001006 ORTHO05D000868 3.3e-10 68.2 45 68.9
Gohir.A12G196600 Gossypium hirsutum HOM05D001006 ORTHO05D000868 3.3e-10 68.2 45 68.9
Sabra03G0109500 Salix brachista HOM05D001006 ORTHO05D000868 3.3e-10 68.2 45 71.1
Actinidia31773 Actinidia chinensis HOM05D001006 ORTHO05D000868 4.3e-10 67.8 45 71.1
Prupe.2G272700 Prunus persica HOM05D001006 ORTHO05D000868 4.3e-10 67.8 45 68.9
Gohir.A03G059900 Gossypium hirsutum HOM05D001006 ORTHO05D000868 5.6e-10 67.4 45 68.9
TWI39G1024 Tripterygium wilfordii HOM05D001006 ORTHO05D000868 5.6e-10 67.4 45 68.9
Gorai.003G112300 Gossypium raimondii HOM05D001006 ORTHO05D000868 7.4e-10 67.0 45 68.9
Cpa.g.sc13.256 Carica papaya HOM05D001006 ORTHO05D000868 9.6e-10 66.6 40 72.5
CsaV3_4G004190 Cucumis sativus L. HOM05D001006 ORTHO05D000868 9.6e-10 66.6 45 66.7
Actinidia01045 Actinidia chinensis HOM05D001006 ORTHO05D000868 2.1e-09 65.5 45 68.9
THA.LOC104825052 Tarenaya hassleriana HOM05D001006 ORTHO05D000868 4.8e-09 64.3 39 71.8
GSVIVG01013965001 Vitis vinifera HOM05D001006 ORTHO05D000868 4.8e-09 64.3 45 60.0
CARHR256840 Cardamine hirsuta HOM05D001006 ORTHO05D000868 6.2e-09 63.9 45 64.4
MD07G1249100 Malus domestica HOM05D001006 ORTHO05D000868 6.2e-09 63.9 45 66.7
Manes.06G131400 Manihot esculenta HOM05D001006 ORTHO05D000868 6.2e-09 63.9 43 69.8
FAN10G4348 Fragaria x ananassa HOM05D000640 ORTHO05D000849 8.1e-09 63.5 46 69.6
Rhsim03G0161400 Rhododendron simsii HOM05D001006 ORTHO05D000868 8.1e-09 63.5 48 60.4
vmacro06836 Vaccinium macrocarpon HOM05D001006 ORTHO05D000868 8.1e-09 63.5 48 62.5
Carub.0008s1122 Capsella rubella HOM05D001006 ORTHO05D000868 1.1e-08 63.2 45 62.2
FAN06G0481 Fragaria x ananassa HOM05D001006 ORTHO05D000868 2.4e-08 62.0 46 69.6
FvH4_7g26960 Fragaria vesca HOM05D001006 ORTHO05D000868 3.1e-08 61.6 46 67.4
CAN.G296.12 Capsicum annuum HOM05D001006 ORTHO05D000868 4.0e-08 61.2 48 60.4
Rhsim09G0190000 Rhododendron simsii HOM05D001006 ORTHO05D000868 4.0e-08 61.2 46 58.7
AT5G51180 Arabidopsis thaliana HOM05D001006 ORTHO05D000868 5.3e-08 60.8 45 60.0
FAN03G0477 Fragaria x ananassa HOM05D006663 ORTHO05D008269 5.3e-08 60.8 46 67.4
PGR142G2161 Punica granatum HOM05D001006 ORTHO05D000868 5.3e-08 60.8 45 62.2
Sed0022686 Sechium edule HOM05D000640 ORTHO05D000868 1.2e-07 59.7 40 65.0
Aa31LG3G7680 Aethionema arabicum HOM05D001006 ORTHO05D000868 1.5e-07 59.3 39 66.7
Cc02_g04710 Coffea canephora HOM05D001006 ORTHO05D000868 1.5e-07 59.3 80 41.2
Thhalv10013958m.g Eutrema salsugineum HOM05D001006 ORTHO05D000868 1.5e-07 59.3 39 66.7
BcaC04g20724 Brassica carinata HOM05D001006 ORTHO05D000868 2.0e-07 58.9 40 70.0
C09p39860 Brassica napus HOM05D001006 ORTHO05D000868 2.0e-07 58.9 40 70.0
BolC9t56885H Brassica oleracea HOM05D001006 ORTHO05D000868 2.0e-07 58.9 40 70.0
vmacro09920 Vaccinium macrocarpon HOM05D001006 ORTHO05D000868 2.0e-07 58.9 46 58.7
Potri.001G079400 Populus trichocarpa HOM05D001006 ORTHO05D000868 2.6e-07 58.5 40 65.0
Sed0025613 Sechium edule HOM05D001006 ORTHO05D000868 3.4e-07 58.2 40 62.5
PGSC0003DMG400026888 Solanum tuberosum HOM05D001006 ORTHO05D000868 3.4e-07 58.2 48 60.4
THA.LOC104811540 Tarenaya hassleriana HOM05D001006 ORTHO05D000868 3.4e-07 58.2 39 66.7
Nitab4.5_0002211g0150 Nicotiana tabacum HOM05D001006 ORTHO05D000868 4.5e-07 57.8 46 67.4
Nitab4.5_0010756g0030 Nicotiana tabacum HOM05D001006 ORTHO05D000868 4.5e-07 57.8 46 65.2
CANSAT56G3401 Cannabis sativa HOM05D001006 ORTHO05D000868 5.8e-07 57.4 45 62.2
Nitab4.5_0012028g0010 Nicotiana tabacum HOM05D001006 ORTHO05D000868 9.9e-07 56.6 46 63.0
Sopen05g030570 Solanum pennellii HOM05D001006 ORTHO05D000868 9.9e-07 56.6 48 58.3
Ah.13g066220 Amaranthus hybridus HOM05D001006 ORTHO05D000868 1.3e-06 56.2 47 57.4
Solyc05g052020.3 Solanum lycopersicum HOM05D001006 ORTHO05D000868 2.2e-06 55.5 48 56.2
BcaB08g35477 Brassica carinata HOM05D001006 ORTHO05D000868 2.9e-06 55.1 40 65.0
Hma1.2p1_1305F.1_g274610 Hydrangea macrophylla HOM05D001006 ORTHO05D000868 2.9e-06 55.1 45 55.6
Nitab4.5_0003173g0020 Nicotiana tabacum HOM05D001006 ORTHO05D000868 2.9e-06 55.1 46 58.7
Oeu006089.1 Olea europaea HOM05D001006 ORTHO05D000868 2.9e-06 55.1 47 57.4
Peaxi162Scf00271g00614 Petunia axillaris HOM05D001006 ORTHO05D000868 2.9e-06 55.1 46 60.9
Sc19g0002140 Simmondsia chinensis HOM05D001006 ORTHO05D000868 2.9e-06 55.1 79 41.8
AUR62002242 Chenopodium quinoa HOM05D001006 ORTHO05D000868 3.8e-06 54.7 48 58.3
Hund11853 Selenicereus undatus HOM05D001006 ORTHO05D000868 3.8e-06 54.7 40 62.5
unitig_0.g2510 Utricularia gibba HOM05D001006 ORTHO05D000868 8.4e-06 53.5 44 54.5


User provided reference genes

Program Settings