Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 1.2e-161 573.2 310 100.0
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 8.6e-139 497.3 310 85.5
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 1.1e-136 490.3 309 84.8
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 4.3e-130 468.4 312 80.4
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 1.6e-129 466.5 310 80.0
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 2.1e-129 466.1 310 80.6
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 3.6e-129 465.3 310 81.0
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 1.4e-128 463.4 310 80.0
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 1.4e-128 463.4 310 79.0
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.8e-128 463.0 318 78.3
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.8e-128 463.0 310 79.0
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 3.1e-128 462.2 310 79.4
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 4.0e-128 461.8 318 78.3
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.2e-127 460.3 310 79.7
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 1.5e-127 459.9 310 79.4
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 2.0e-127 459.5 317 77.3
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 2.0e-127 459.5 317 77.3
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 2.0e-127 459.5 310 79.4
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 2.6e-127 459.1 310 79.4
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 2.6e-127 459.1 310 79.7
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 3.4e-127 458.8 310 78.7
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 7.6e-127 457.6 310 77.4
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 7.6e-127 457.6 310 79.4
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 9.9e-127 457.2 310 79.4
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 9.9e-127 457.2 310 79.4
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 1.3e-126 456.8 310 79.4
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 1.7e-126 456.4 310 79.0
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 3.8e-126 455.3 310 78.4
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 4.9e-126 454.9 310 78.1
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 8.4e-126 454.1 310 78.4
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 1.4e-125 453.4 310 78.7
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 1.4e-125 453.4 310 79.4
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 5.4e-125 451.4 318 76.4
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 7.1e-125 451.1 310 78.4
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 9.3e-125 450.7 310 77.1
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 1.2e-124 450.3 310 77.7
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 1.2e-124 450.3 310 77.1
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 6.0e-124 448.0 318 77.0
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 2.3e-123 446.0 318 75.8
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 3.0e-123 445.7 310 78.4
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 3.0e-123 445.7 318 74.2
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 3.9e-123 445.3 311 76.8
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 5.1e-123 444.9 310 76.8
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.5e-122 443.4 318 74.2
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 1.9e-122 443.0 319 73.7
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.9e-122 443.0 318 74.2
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 3.3e-122 442.2 318 73.9
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 4.3e-122 441.8 318 73.3
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 4.3e-122 441.8 310 76.8
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 1.3e-121 440.3 362 68.8
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 1.6e-121 439.9 318 72.3
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 2.8e-121 439.1 310 76.1
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 3.7e-121 438.7 318 72.6
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.7e-121 438.7 310 75.8
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 3.7e-121 438.7 318 73.0
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 1.4e-120 436.8 318 72.6
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 2.4e-120 436.0 310 75.5
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 3.1e-120 435.6 310 75.5
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 3.1e-120 435.6 310 76.1
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 5.3e-120 434.9 310 75.2
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 9.0e-120 434.1 318 71.1
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 1.2e-119 433.7 316 73.4
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.5e-119 433.3 309 74.8
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 4.5e-119 431.8 310 75.2
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 4.5e-119 431.8 318 72.0
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 1.7e-118 429.9 310 74.2
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 6.4e-118 427.9 311 75.6
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 1.4e-117 426.8 314 74.5
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 3.2e-117 425.6 310 71.9
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 4.2e-117 425.2 310 74.8
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 4.2e-117 425.2 318 70.8
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 5.5e-117 424.9 310 73.9
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 7.1e-117 424.5 311 74.9
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 7.1e-117 424.5 319 72.7
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 1.6e-116 423.3 310 73.2
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 2.1e-116 422.9 312 74.7
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 4.6e-116 421.8 310 74.2
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 4.6e-116 421.8 311 74.0
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 6.0e-116 421.4 318 70.1
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 3.0e-115 419.1 310 73.2
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 3.0e-115 419.1 262 85.1
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.9e-115 418.7 345 67.5
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.1e-114 417.2 310 70.3
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 3.3e-114 415.6 310 71.3
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 5.6e-114 414.8 311 72.3
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 4.8e-113 411.8 312 71.5
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 1.1e-112 410.6 312 72.1
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 1.8e-112 409.8 310 70.3
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 6.9e-112 407.9 307 70.7
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 9.0e-112 407.5 312 71.8
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 5.8e-111 404.8 310 70.6
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 3.8e-110 402.1 316 67.4
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 4.2e-109 398.7 278 77.3
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 5.5e-109 398.3 315 67.3
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 9.3e-109 397.5 285 76.5
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 2.7e-108 396.0 297 72.7
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 2.7e-108 396.0 294 72.8
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 6.0e-108 394.8 315 67.0
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 7.9e-108 394.4 294 72.4
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 3.9e-107 392.1 294 72.1
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 3.9e-107 392.1 279 74.9
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.3e-106 389.0 319 69.9
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 3.3e-106 389.0 321 65.4
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 4.5e-103 378.6 286 72.4
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 4.5e-103 378.6 281 71.9
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 1.3e-102 377.1 310 65.5
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 2.2e-102 376.3 312 66.7
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 3.8e-102 375.6 262 75.6
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 5.0e-102 375.2 286 71.0
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.0e-99 365.9 256 77.3
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 3.9e-99 365.5 276 71.0
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 9.7e-98 360.9 310 66.8
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 1.0e-94 350.9 310 65.8
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 8.5e-94 347.8 256 73.0
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 1.6e-92 343.6 310 61.6
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 7.9e-92 341.3 314 59.2
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 5.1e-91 338.6 314 61.5
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.1e-88 330.9 310 60.3
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 2.4e-88 329.7 262 65.6
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 3.0e-83 312.8 242 69.8
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 5.2e-83 312.0 221 74.7
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 5.2e-83 312.0 228 73.2
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 4.4e-82 308.9 310 56.1
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 6.7e-75 285.0 740 33.2
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 6.3e-73 278.5 391 47.1
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 2.0e-71 273.5 314 49.0
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 1.3e-65 254.2 315 47.6
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 2.2e-65 253.4 309 50.8
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 7.5e-58 228.4 178 72.5
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 6.6e-54 215.3 292 44.9
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 3.4e-50 203.0 185 64.9
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.2e-48 196.4 150 76.7
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 9.2e-48 194.9 264 50.4
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 6.2e-44 182.2 157 66.2
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 5.2e-43 179.1 120 82.5
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 9.2e-40 168.3 121 78.5
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 2.1e-39 167.2 143 65.7
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 5.6e-37 159.1 244 43.0
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.5e-34 151.0 112 65.2
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 3.4e-34 149.8 265 43.8
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 7.8e-31 138.7 91 79.1
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 5.6e-29 132.5 309 33.0
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.6e-28 129.8 110 64.5
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 3.4e-26 123.2 127 60.6
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 9.9e-26 121.7 100 64.0
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 2.4e-24 117.1 93 66.7
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 7.1e-24 115.5 89 64.0
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 7.1e-24 115.5 163 52.8
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.2e-23 114.8 110 60.9
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.9e-16 90.9 58 77.6
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 4.6e-15 86.3 57 75.4
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 2.5e-13 80.5 394 23.4
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.6e-12 77.8 84 54.8
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 1.8e-06 57.8 41 68.3
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 3.0e-06 57.0 121 34.7


User provided reference genes

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