Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G126900 Carya illinoinensis HOM05D000076 ORTHO05D034244 6.8e-57 223.8 114 100.0
CiPaw.10G126700 Carya illinoinensis HOM05D000076 ORTHO05D002916 1.3e-23 113.2 79 79.7
Haze_20483 Corylus avellana HOM05D000076 ORTHO05D002916 1.3e-18 96.7 85 64.7
CANSAT11G1727 Cannabis sativa HOM05D000076 ORTHO05D002916 8.1e-18 94.0 85 58.8
Cfa017668 Carpinus fangiana HOM05D000076 ORTHO05D002916 8.1e-18 94.0 85 62.4
Ciclev10019212m.g Citrus clementina HOM05D000076 ORTHO05D002916 3.4e-16 88.6 83 57.8
Cpa.g.sc51.143 Carica papaya HOM05D000076 ORTHO05D002916 2.9e-15 85.5 85 56.5
PGR042G0755 Punica granatum HOM05D000076 ORTHO05D002916 2.9e-15 85.5 96 49.0
MD12G1006300 Malus domestica HOM05D000076 ORTHO05D002916 3.8e-15 85.1 85 54.1
MD14G1003900 Malus domestica HOM05D000076 ORTHO05D002916 6.4e-15 84.3 85 54.1
Thecc.05G247600 Theobroma cacao HOM05D000076 ORTHO05D002916 1.1e-14 83.6 85 55.3
Gohir.A13G165400 Gossypium hirsutum HOM05D000076 ORTHO05D002916 2.4e-14 82.4 86 53.5
Manes.09G139700 Manihot esculenta HOM05D000076 ORTHO05D002916 3.2e-14 82.0 88 52.3
Gohir.A11G233600 Gossypium hirsutum HOM05D000076 ORTHO05D002916 4.2e-14 81.6 85 52.9
Gohir.D11G244800 Gossypium hirsutum HOM05D000076 ORTHO05D002916 4.2e-14 81.6 85 52.9
TAR636G2623 Trochodendron aralioides HOM05D000076 ORTHO05D002916 9.3e-14 80.5 85 52.9
Gorai.013G193700 Gossypium raimondii HOM05D000076 ORTHO05D002916 1.2e-13 80.1 86 53.5
Duzib128G0208 Durio zibethinus HOM05D000076 ORTHO05D002916 1.6e-13 79.7 85 52.9
Gohir.D13G168400 Gossypium hirsutum HOM05D000076 ORTHO05D002916 2.1e-13 79.3 86 53.5
Gorai.007G260400 Gossypium raimondii HOM05D000076 ORTHO05D002916 2.1e-13 79.3 85 51.8
Prupe.7G006400 Prunus persica HOM05D000076 ORTHO05D002916 2.7e-13 79.0 85 52.9
Manes.08G145700 Manihot esculenta HOM05D000076 ORTHO05D002916 4.6e-13 78.2 88 52.3
TAR633G0673 Trochodendron aralioides HOM05D000076 ORTHO05D002916 6.0e-13 77.8 85 54.1
Gohir.A08G218800 Gossypium hirsutum HOM05D000076 ORTHO05D002916 1.3e-12 76.6 93 50.5
Gohir.D08G235900 Gossypium hirsutum HOM05D000076 ORTHO05D002916 1.3e-12 76.6 93 50.5
Gorai.004G250700 Gossypium raimondii HOM05D000076 ORTHO05D002916 1.3e-12 76.6 93 50.5
Aqoxy7G00520 Aquilegia oxysepala HOM05D000076 ORTHO05D002916 5.1e-12 74.7 85 51.8
GSVIVG01016152001 Vitis vinifera HOM05D000076 ORTHO05D002916 5.1e-12 74.7 85 54.1
Hma1.2p1_2958F.1_g330820 Hydrangea macrophylla HOM05D000076 ORTHO05D034244 4.3e-11 71.6 84 51.2
Glyma.04G229200 Glycine max HOM05D000076 ORTHO05D002916 7.4e-11 70.9 85 45.9
Actinidia39899 Actinidia chinensis HOM05D000076 ORTHO05D002916 2.1e-10 69.3 86 51.2
Glyma.06G135600 Glycine max HOM05D000076 ORTHO05D002916 2.8e-10 68.9 85 44.7
arahy.Tifrunner.gnm1.ann1.705WIK Arachis hypogaea HOM05D000076 ORTHO05D002916 4.8e-10 68.2 83 43.4
Lj5g0008397 Lotus japonicus HOM05D000076 ORTHO05D002916 4.8e-10 68.2 85 45.9
CSS0015655 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D002916 8.1e-10 67.4 86 48.8
CSS0016249 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D002916 8.1e-10 67.4 86 48.8
CARHR077890 Cardamine hirsuta HOM05D000076 ORTHO05D002916 8.1e-10 67.4 87 47.1
Phvul.009G045900 Phaseolus vulgaris HOM05D000076 ORTHO05D002916 8.1e-10 67.4 85 45.9
A01p41300 Brassica napus HOM05D000076 ORTHO05D002916 1.1e-09 67.0 83 48.2
BNapus_Darmor_BZH_scaffold_78p00410 Brassica napus HOM05D000076 ORTHO05D002916 1.1e-09 67.0 83 48.2
BraA01t04554Z Brassica rapa HOM05D000076 ORTHO05D002916 1.1e-09 67.0 83 48.2
SHI14951 Sapria himalayana HOM05D000076 ORTHO05D002916 1.1e-09 67.0 88 45.5
TPR.G2869 Trifolium pratense HOM05D000076 ORTHO05D002916 1.1e-09 67.0 85 42.4
vmacro15438 Vaccinium macrocarpon HOM05D000076 ORTHO05D002916 1.1e-09 67.0 88 47.7
BolC1t05804H Brassica oleracea HOM05D000076 ORTHO05D002916 1.4e-09 66.6 83 47.0
Dinv28267 Davidia involucrata HOM05D000076 ORTHO05D002916 1.4e-09 66.6 86 48.8
Medtr1g007390 Medicago truncatula HOM05D000076 ORTHO05D002916 1.4e-09 66.6 83 45.8
Sabra13G0050000 Salix brachista HOM05D000076 ORTHO05D002916 1.4e-09 66.6 91 49.5
ClCG10G013520 Citrullus lanatus HOM05D000076 ORTHO05D002916 1.8e-09 66.2 83 48.2
Ca_06435_v3 Cicer arietinum L. HOM05D000076 ORTHO05D002916 2.4e-09 65.9 85 42.4
Medtr3g092590 Medicago truncatula HOM05D000076 ORTHO05D002916 2.4e-09 65.9 83 44.6
MELO3C026619.2 Cucumis melo HOM05D000076 ORTHO05D002916 4.0e-09 65.1 83 47.0
CsaV3_3G043120 Cucumis sativus L. HOM05D000076 ORTHO05D002916 4.0e-09 65.1 83 47.0
Rhsim02G0037000 Rhododendron simsii HOM05D000076 ORTHO05D002916 4.0e-09 65.1 86 46.5
Sed0028011 Sechium edule HOM05D000076 ORTHO05D002916 4.0e-09 65.1 83 45.8
AT3G03810 Arabidopsis thaliana HOM05D000076 ORTHO05D002916 5.3e-09 64.7 83 47.0
C03p40640 Brassica napus HOM05D000076 ORTHO05D002916 6.9e-09 64.3 83 45.8
BolC3t16329H Brassica oleracea HOM05D000076 ORTHO05D002916 6.9e-09 64.3 83 45.8
Lj4C250G3 Lonicera japonica HOM05D000076 ORTHO05D002916 6.9e-09 64.3 85 48.2
Potri.013G056200 Populus trichocarpa HOM05D000076 ORTHO05D002916 6.9e-09 64.3 89 48.3
Psat5g072360 Pisum sativum HOM05D000076 ORTHO05D002916 9.0e-09 63.9 79 44.3
Dinv17146 Davidia involucrata HOM05D000076 ORTHO05D002916 1.2e-08 63.5 84 47.6
Eucgr.F02920 Eucalyptus grandis HOM05D000076 ORTHO05D002916 1.2e-08 63.5 79 44.3
A03p33440 Brassica napus HOM05D000076 ORTHO05D002916 1.5e-08 63.2 83 44.6
BraA03t12519Z Brassica rapa HOM05D000076 ORTHO05D002916 1.5e-08 63.2 83 44.6
Sp3g02790 Schrenkiella parvula HOM05D000076 ORTHO05D002916 2.0e-08 62.8 83 44.6
Sc20g0000940 Simmondsia chinensis HOM05D000076 ORTHO05D002916 2.0e-08 62.8 83 42.2
ATR1101G077 Amborella trichopoda HOM05D000076 ORTHO05D002916 5.8e-08 61.2 83 43.4
Thhalv10020245m.g Eutrema salsugineum HOM05D000076 ORTHO05D002916 5.8e-08 61.2 83 43.4
Lsat_1_v5_gn_3_45540 Lactuca sativa HOM05D000076 ORTHO05D002916 5.8e-08 61.2 86 48.8
RcHm_v2.0_Chr3g0496781 Rosa chinensis HOM05D000076 ORTHO05D002916 7.6e-08 60.8 72 48.6
BcaC01g04390 Brassica carinata HOM05D000076 ORTHO05D002916 9.9e-08 60.5 83 42.2
BcaNung07117 Brassica carinata HOM05D000076 ORTHO05D002916 9.9e-08 60.5 83 42.2
Potri.019G036600 Populus trichocarpa HOM05D000076 ORTHO05D002916 9.9e-08 60.5 86 43.0
Aa31LG5G14360 Aethionema arabicum HOM05D000076 ORTHO05D002916 1.7e-07 59.7 83 43.4
SEGI_35713 Sequoiadendron giganteum HOM05D000076 ORTHO05D002916 2.9e-07 58.9 100 39.0
Ah.04g162890 Amaranthus hybridus HOM05D000076 ORTHO05D002916 3.8e-07 58.5 84 42.9
ECA246G2625 Erigeron canadensis HOM05D000076 ORTHO05D002916 3.8e-07 58.5 84 48.8
HanXRQChr13g0402541 Helianthus annuus HOM05D000076 ORTHO05D002916 3.8e-07 58.5 86 44.2
Oeu015304.1 Olea europaea HOM05D000076 ORTHO05D002916 3.8e-07 58.5 85 44.7
EL10Ac4g08904 Beta vulgaris HOM05D000076 ORTHO05D002916 6.4e-07 57.8 81 42.0
Sed0007012 Sechium edule HOM05D000076 ORTHO05D002916 6.4e-07 57.8 83 41.0
Ah.06g191480 Amaranthus hybridus HOM05D000076 ORTHO05D002916 8.4e-07 57.4 84 42.9
Carub.0003s0298 Capsella rubella HOM05D000076 ORTHO05D002916 8.4e-07 57.4 83 44.6
HanXRQChr13g0389041 Helianthus annuus HOM05D000076 ORTHO05D002916 8.4e-07 57.4 84 42.9
Lsat_1_v5_gn_8_126741 Lactuca sativa HOM05D000076 ORTHO05D002916 8.4e-07 57.4 83 45.8
FvH4_1g28330 Fragaria vesca HOM05D000076 ORTHO05D002916 1.9e-06 56.2 80 46.2
FAN23G0880 Fragaria x ananassa HOM05D000076 ORTHO05D002916 1.9e-06 56.2 80 46.2
FAN26G1506 Fragaria x ananassa HOM05D000076 ORTHO05D002916 1.9e-06 56.2 80 46.2
PSO478G0753 Papaver somniferum HOM05D000076 ORTHO05D002916 1.9e-06 56.2 84 46.4
PSO782G5413 Papaver somniferum HOM05D000076 ORTHO05D002916 1.9e-06 56.2 84 46.4
Sabra19G0048100 Salix brachista HOM05D000076 ORTHO05D002916 2.4e-06 55.8 93 43.0
MSTRG.25358 Avicennia marina HOM05D000076 ORTHO05D002916 3.2e-06 55.5 80 41.2
THA.LOC104802875 Tarenaya hassleriana HOM05D000076 ORTHO05D002916 4.2e-06 55.1 83 42.2
Lalb_Chr20g0112221 Lupinus albus HOM05D000076 ORTHO05D002916 7.1e-06 54.3 85 38.8
VMungo1309G0305 Vigna mungo HOM05D000076 ORTHO05D002916 9.3e-06 53.9 69 44.9


User provided reference genes

Program Settings