Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G123900 Carya illinoinensis HOM05D005060 ORTHO05D005975 4.3e-46 188.3 156 100.0
Cfa019938 Carpinus fangiana HOM05D005060 ORTHO05D005975 1.5e-19 100.1 117 58.1
Haze_20306 Corylus avellana HOM05D005060 ORTHO05D005975 2.6e-19 99.4 165 52.7
MD07G1060800 Malus domestica HOM05D005060 ORTHO05D005975 2.9e-18 95.9 165 52.1
MD02G1260500 Malus domestica HOM05D005060 ORTHO05D005975 7.2e-17 91.3 161 54.7
Sed0011991 Sechium edule HOM05D005060 ORTHO05D005975 1.0e-15 87.4 160 41.9
ClCG04G005980 Citrullus lanatus HOM05D005060 ORTHO05D005975 2.3e-15 86.3 162 40.7
Ciclev10013047m.g Citrus clementina HOM05D005060 ORTHO05D005975 5.2e-15 85.1 165 55.2
CsaV3_4G029150 Cucumis sativus L. HOM05D005060 ORTHO05D005975 6.7e-15 84.7 161 40.4
MELO3C019148.2 Cucumis melo HOM05D005060 ORTHO05D005975 8.8e-15 84.3 161 39.8
Potri.016G027600 Populus trichocarpa HOM05D005060 ORTHO05D005975 2.0e-14 83.2 93 58.1
Prupe.2G065900 Prunus persica HOM05D005060 ORTHO05D005975 2.6e-14 82.8 160 48.1
RcHm_v2.0_Chr1g0331611 Rosa chinensis HOM05D005060 ORTHO05D005975 1.3e-13 80.5 113 57.5
Sabra16G0031900 Salix brachista HOM05D005060 ORTHO05D005975 1.3e-13 80.5 93 64.5
TWI53G1989 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 1.3e-13 80.5 116 56.9
CANSAT78G0005 Cannabis sativa HOM05D005060 ORTHO05D005975 6.3e-13 78.2 120 64.2
Sabra16G0032200 Salix brachista HOM05D005060 ORTHO05D005975 6.3e-13 78.2 93 60.2
Atru.chr1.1520 Acer truncatum HOM05D005060 ORTHO05D005975 8.2e-13 77.8 166 53.0
TWI74G0004 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 1.2e-11 73.9 119 59.7
Hma1.2p1_0031F.1_g018400 Hydrangea macrophylla HOM05D005060 ORTHO05D005975 4.5e-11 72.0 115 62.6
Hma1.2p1_2089F.1_g313840 Hydrangea macrophylla HOM05D005060 ORTHO05D005975 4.5e-11 72.0 115 62.6
Nn7g37114 Nelumbo nucifera HOM05D005060 ORTHO05D005975 4.5e-11 72.0 111 61.3
FAN06G1820 Fragaria x ananassa HOM05D002241 ORTHO05D002458 1.0e-10 70.9 110 51.8
QL07p014521 Quercus lobata HOM05D005060 ORTHO05D005975 1.0e-10 70.9 161 57.1
PGR042G1122 Punica granatum HOM05D005060 ORTHO05D005975 1.7e-10 70.1 118 52.5
FvH4_7g05170 Fragaria vesca HOM05D005060 ORTHO05D005975 2.2e-10 69.7 161 43.5
FAN03G0591 Fragaria x ananassa HOM05D005060 ORTHO05D005975 2.2e-10 69.7 109 53.2
FAN06G0894 Fragaria x ananassa HOM05D005060 ORTHO05D005975 2.2e-10 69.7 161 43.5
Eucgr.A02181 Eucalyptus grandis HOM05D005060 ORTHO05D005975 6.5e-10 68.2 112 56.2
FAN01G1650 Fragaria x ananassa HOM05D005060 ORTHO05D005975 6.5e-10 68.2 161 44.1
Migut.J01559 Erythranthe guttata HOM05D005060 ORTHO05D005975 1.5e-09 67.0 115 54.8
GSVIVG01025849001 Vitis vinifera HOM05D005060 ORTHO05D005975 1.9e-09 66.6 118 59.3
ATR0787G086 Amborella trichopoda HOM05D005060 ORTHO05D005975 3.2e-09 65.9 98 63.3
Rhsim04G0118500 Rhododendron simsii HOM05D005060 ORTHO05D005975 3.2e-09 65.9 111 39.6
Lj1C23T21 Lonicera japonica HOM05D005060 ORTHO05D005975 7.2e-09 64.7 114 46.5
PGSC0003DMG400028107 Solanum tuberosum HOM05D005060 ORTHO05D005975 9.4e-09 64.3 95 51.6
Cpa.g.sc33.199 Carica papaya HOM05D005060 ORTHO05D005975 1.2e-08 63.9 162 45.1
FAN10G4368 Fragaria x ananassa HOM05D002241 ORTHO05D002458 1.2e-08 63.9 158 43.0
Lalb_Chr24g0400621 Lupinus albus HOM05D005060 ORTHO05D005975 1.2e-08 63.9 103 43.7
Ca_08351_v3 Cicer arietinum L. HOM05D005060 ORTHO05D005975 1.6e-08 63.5 93 43.0
ECA236G1981 Erigeron canadensis HOM05D005060 ORTHO05D005975 1.6e-08 63.5 114 57.0
Lj1g0025022 Lotus japonicus HOM05D005060 ORTHO05D005975 1.6e-08 63.5 112 40.2
Nitab4.5_0003286g0020 Nicotiana tabacum HOM05D005060 ORTHO05D005975 2.1e-08 63.2 95 42.1
Oeu023007.1 Olea europaea HOM05D005060 ORTHO05D005975 2.1e-08 63.2 96 61.5
TPR.G27972 Trifolium pratense HOM05D005060 ORTHO05D005975 2.1e-08 63.2 112 44.6
Lalb_Chr14g0365381 Lupinus albus HOM05D005060 ORTHO05D005975 2.7e-08 62.8 65 61.5
Peaxi162Scf00153g01321 Petunia axillaris HOM05D005060 ORTHO05D005975 2.7e-08 62.8 112 57.1
Medtr7g088520 Medicago truncatula HOM05D005060 ORTHO05D005975 6.1e-08 61.6 87 54.0
PSO339G2385 Papaver somniferum HOM05D005060 ORTHO05D005975 6.1e-08 61.6 118 50.8
Lalb_Chr22g0358011 Lupinus albus HOM05D005060 ORTHO05D005975 8.0e-08 61.2 105 43.8
Nitab4.5_0000062g0300 Nicotiana tabacum HOM05D005060 ORTHO05D005975 8.0e-08 61.2 95 55.8
Aqoxy1G00045 Aquilegia oxysepala HOM05D005060 ORTHO05D005975 1.0e-07 60.8 114 60.5
Cpa.g.sc33.198 Carica papaya HOM05D005060 ORTHO05D005975 1.0e-07 60.8 119 54.6
PSO384G0259 Papaver somniferum HOM05D005060 ORTHO05D005975 1.0e-07 60.8 118 50.0
Solyc10g081100.3 Solanum lycopersicum HOM05D005060 ORTHO05D005975 1.0e-07 60.8 95 49.5
Sopen10g031600 Solanum pennellii HOM05D005060 ORTHO05D005975 1.0e-07 60.8 95 49.5
SGA_v2.0_scaffold69G23194 Striga asiatica HOM05D005060 ORTHO05D005975 1.0e-07 60.8 96 59.4
CAN.G128.101 Capsicum annuum HOM05D005060 ORTHO05D005975 1.4e-07 60.5 95 47.4
Psat0s2745g0280 Pisum sativum HOM05D005060 ORTHO05D005975 1.4e-07 60.5 114 37.7
EL10Ac3g07347 Beta vulgaris HOM05D005060 ORTHO05D005975 1.8e-07 60.1 93 57.0
arahy.Tifrunner.gnm1.ann1.U3TF2Z Arachis hypogaea HOM05D005060 ORTHO05D005975 2.3e-07 59.7 62 61.3
Glyma.19G124900 Glycine max HOM05D005060 ORTHO05D005975 2.3e-07 59.7 93 49.5
DCAR_009091 Daucus carota HOM05D005060 ORTHO05D005975 3.0e-07 59.3 95 64.2
HanXRQChr05g0130501 Helianthus annuus HOM05D005060 ORTHO05D005975 4.0e-07 58.9 111 43.2
Manes.13G072000 Manihot esculenta HOM05D005060 ORTHO05D005975 4.0e-07 58.9 111 51.4
Phvul.001G116500 Phaseolus vulgaris HOM05D005060 ORTHO05D005975 4.0e-07 58.9 100 47.0
TAR369G0553 Trochodendron aralioides HOM05D005060 ORTHO05D005975 4.0e-07 58.9 97 61.9
arahy.Tifrunner.gnm1.ann1.3R5KQS Arachis hypogaea HOM05D005060 ORTHO05D005975 5.2e-07 58.5 62 64.5
VMungo1383G0657 Vigna mungo HOM05D005060 ORTHO05D005975 5.2e-07 58.5 91 49.5
CSS0016899 Camellia sinensis var. sinensis HOM05D005060 ORTHO05D005975 6.7e-07 58.2 93 61.3
Nitab4.5_0001270g0130 Nicotiana tabacum HOM05D005060 ORTHO05D005975 6.7e-07 58.2 113 55.8
PGSC0003DMG400007184 Solanum tuberosum HOM05D005060 ORTHO05D005975 6.7e-07 58.2 113 55.8
Gohir.A13G001200 Gossypium hirsutum HOM05D005060 ORTHO05D005975 1.2e-06 57.4 86 41.9
Lsat_1_v5_gn_8_109400 Lactuca sativa HOM05D005060 ORTHO05D005975 1.2e-06 57.4 93 39.8
MSTRG.6293 Avicennia marina HOM05D005060 ORTHO05D005975 1.5e-06 57.0 115 53.9
MBI19_g25016_MAGBIO Magnolia biondii HOM05D005060 ORTHO05D005975 1.5e-06 57.0 115 56.5
Duzib128G1851 Durio zibethinus HOM05D005060 ORTHO05D005975 2.6e-06 56.2 93 61.3
Potri.006G029500 Populus trichocarpa HOM05D005060 ORTHO05D005975 2.6e-06 56.2 113 36.3
Potri.006G028500 Populus trichocarpa HOM05D005060 ORTHO05D005975 4.4e-06 55.5 113 46.0
SGA_v2.0_scaffold66G22311 Striga asiatica HOM05D005060 ORTHO05D005975 4.4e-06 55.5 120 44.2
unitig_21.g20673 Utricularia gibba HOM05D005060 ORTHO05D005975 4.4e-06 55.5 90 44.4
Sc13g0000780 Simmondsia chinensis HOM05D005060 ORTHO05D005975 5.7e-06 55.1 112 49.1
Sopen10g028770 Solanum pennellii HOM05D005060 ORTHO05D005975 5.7e-06 55.1 113 54.9
AUR62020993 Chenopodium quinoa HOM05D005060 ORTHO05D005975 7.5e-06 54.7 111 56.8
Hund24512 Selenicereus undatus HOM05D005060 ORTHO05D005975 9.7e-06 54.3 116 56.9


User provided reference genes

Program Settings