Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 0.0e+00 1412.9 738 100.0
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 0.0e+00 1261.5 769 88.6
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 2.5e-216 756.1 798 58.9
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 2.1e-215 753.1 759 61.1
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 7.9e-215 751.1 782 58.7
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 7.4e-120 435.6 750 42.9
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 2.1e-119 434.1 768 41.5
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 3.8e-108 396.7 772 40.4
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.2e-106 391.7 746 41.8
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 6.5e-100 369.4 729 42.2
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 1.2e-98 365.2 586 44.5
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 4.3e-96 356.7 779 39.8
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 1.9e-91 341.3 730 39.3
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 9.4e-91 339.0 738 37.9
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 9.4e-91 339.0 747 36.8
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 1.8e-89 334.7 736 39.0
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 2.3e-89 334.3 736 37.6
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 9.7e-88 328.9 775 37.5
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 2.2e-87 327.8 822 36.4
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 8.2e-87 325.9 774 37.7
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 1.3e-84 318.5 784 36.7
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 5.0e-84 316.6 573 41.2
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 8.5e-84 315.8 570 43.0
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 8.5e-84 315.8 733 38.2
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 4.2e-83 313.5 722 37.0
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 1.2e-82 312.0 593 41.3
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 3.0e-81 307.4 620 40.6
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 2.6e-80 304.3 754 36.3
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 6.3e-79 299.7 831 34.1
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 8.2e-79 299.3 749 36.4
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.8e-78 298.1 595 39.8
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 1.7e-76 291.6 778 35.3
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 1.7e-76 291.6 897 32.7
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 5.5e-75 286.6 596 39.4
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 5.5e-75 286.6 735 34.8
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 6.1e-74 283.1 774 34.8
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.8e-73 281.6 784 34.2
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 3.0e-73 280.8 351 53.8
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 5.2e-73 280.0 751 34.2
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 7.5e-72 276.2 715 36.1
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 1.7e-71 275.0 714 35.2
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 2.4e-70 271.2 601 38.8
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 3.1e-70 270.8 360 49.2
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 1.7e-68 265.0 663 34.1
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 8.5e-68 262.7 747 34.1
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 7.2e-67 259.6 767 33.6
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 8.0e-66 256.1 724 35.1
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 5.2e-65 253.4 723 33.9
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 6.8e-65 253.1 666 33.9
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 6.3e-63 246.5 607 34.9
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 1.1e-62 245.7 751 34.4
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 7.0e-62 243.0 698 32.1
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 2.9e-60 237.7 690 34.8
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 8.6e-60 236.1 568 35.7
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 1.5e-59 235.3 741 32.4
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 4.2e-59 233.8 359 44.3
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 5.5e-59 233.4 742 32.6
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 5.5e-59 233.4 599 37.1
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 2.1e-58 231.5 825 32.6
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 1.0e-57 229.2 730 32.3
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 6.8e-57 226.5 679 36.2
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 8.9e-57 226.1 356 46.3
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.0e-56 224.9 529 37.6
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 2.6e-56 224.6 790 31.5
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 8.3e-55 219.5 481 39.5
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 1.0e-52 212.6 376 44.1
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 3.8e-52 210.7 645 33.2
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 3.8e-52 210.7 749 32.4
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 6.6e-52 209.9 605 33.6
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 1.1e-51 209.1 670 32.1
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 3.3e-51 207.6 762 34.4
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 4.3e-51 207.2 247 49.8
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 9.5e-51 206.1 361 41.3
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 5.2e-49 200.3 266 48.1
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 3.4e-48 197.6 341 41.6
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 4.4e-48 197.2 754 31.0
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 1.7e-47 195.3 648 32.3
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 2.9e-47 194.5 771 29.8
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 4.9e-47 193.7 421 38.2
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 5.4e-46 190.3 643 32.3
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 7.0e-46 189.9 534 34.3
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 6.0e-45 186.8 243 48.1
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 8.6e-44 183.0 655 31.3
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.1e-43 182.6 503 33.4
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 1.1e-43 182.6 384 38.5
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 1.9e-43 181.8 665 29.8
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 2.5e-43 181.4 537 33.3
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 1.6e-42 178.7 630 32.1
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 6.8e-41 173.3 698 28.4
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 8.9e-41 172.9 416 34.6
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 8.9e-41 172.9 714 29.7
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 3.4e-40 171.0 285 40.4
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 4.9e-39 167.2 739 29.8
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 1.1e-38 166.0 235 46.0
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 5.4e-38 163.7 508 33.9
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 7.0e-38 163.3 528 32.0
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 1.3e-36 159.1 188 44.7
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 6.6e-36 156.8 157 58.6
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 1.9e-35 155.2 388 34.8
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 4.3e-35 154.1 137 60.6
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 5.6e-35 153.7 244 42.2
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 9.5e-35 152.9 753 28.4
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.6e-34 152.1 265 40.0
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 1.6e-34 152.1 252 40.5
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 2.1e-34 151.8 746 29.9
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 8.1e-34 149.8 593 29.3
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 8.1e-34 149.8 249 38.6
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 8.1e-34 149.8 249 38.6
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 8.1e-34 149.8 292 38.0
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 3.1e-33 147.9 473 30.2
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 3.1e-33 147.9 246 37.8
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 2.6e-32 144.8 307 36.5
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 3.4e-32 144.4 410 32.2
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 5.8e-32 143.7 394 33.5
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 9.9e-32 142.9 374 35.6
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 1.1e-30 139.4 562 30.1
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 2.4e-30 138.3 302 37.4
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 4.1e-30 137.5 237 37.1
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 1.2e-29 136.0 314 37.9
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 1.6e-29 135.6 465 30.3
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 3.5e-29 134.4 591 27.2
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.0e-28 132.9 231 39.4
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 3.3e-27 127.9 544 28.3
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 4.3e-27 127.5 176 39.2
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 3.1e-25 121.3 164 43.9
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 5.2e-25 120.6 152 44.7
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 8.9e-25 119.8 244 33.2
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 7.6e-24 116.7 197 42.1
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 4.9e-23 114.0 231 35.1
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 8.4e-23 113.2 552 27.7
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 2.4e-22 111.7 478 28.2
Sc19g0000570 Simmondsia chinensis HOM05D003739 ORTHO05D003996 1.2e-21 109.4 599 27.7
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 1.6e-21 109.0 473 27.7
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 1.6e-21 109.0 255 32.2
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 7.8e-21 106.7 478 27.6
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.9e-20 104.4 246 34.6
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 5.6e-19 100.5 284 29.9
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 3.6e-18 97.8 123 43.1
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 1.1e-17 96.3 145 38.6
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 9.0e-17 93.2 159 42.8
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 1.5e-16 92.4 198 37.9
Atru.chr5.3066 Acer truncatum HOM05D003739 ORTHO05D003996 2.6e-16 91.7 149 40.3
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 3.4e-16 91.3 155 36.8
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 3.4e-16 91.3 155 36.8
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 4.4e-16 90.9 61 65.6
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 5.8e-16 90.5 315 28.9
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.4e-14 85.9 148 40.5
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 1.9e-14 85.5 391 29.7
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 9.3e-14 83.2 80 56.2
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 1.6e-13 82.4 127 38.6
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 1.6e-13 82.4 123 36.6
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.3e-12 78.6 119 43.7
TPR.G20410 Trifolium pratense HOM05D003739 ORTHO05D003996 2.3e-12 78.6 215 35.8
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 8.7e-12 76.6 97 38.1
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 2.1e-10 72.0 55 61.8
SMO293G0020 Selaginella moellendorffii HOM05D027797 ORTHO05D003996 2.4e-09 68.6 203 29.6
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 4.0e-09 67.8 100 44.0
Thecc.07G171200 Theobroma cacao HOM05D003739 ORTHO05D003996 6.9e-09 67.0 170 36.5
Hma1.2p1_0088F.1_g045220 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 2.0e-08 65.5 54 59.3
FAN20G1594 Fragaria x ananassa HOM05D003739 ORTHO05D003996 5.8e-08 63.9 125 40.0
Thhalv10000433m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 4.2e-06 57.8 77 44.2


User provided reference genes

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